Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45788 results

148D
DownloadVisualize
BU of 148d by Molmil
THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE THROMBIN BINDING DNA APTAMER D(GGTTGGTGTGGTTGG)
Descriptor: DNA (5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3')
Authors:Schultze, P, Macaya, R.F, Feigon, J.
Deposit date:1993-11-15
Release date:1994-04-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG).
J.Mol.Biol., 235, 1994
1A3U
DownloadVisualize
BU of 1a3u by Molmil
STAPHYLOCOCCAL NUCLEASE, CYCLOHEXANE THIOL DISULFIDE TO V23C VARIANT
Descriptor: CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
Authors:Wynn, R, Harkins, P.C, Richards, F.M, Fox, R.O.
Deposit date:1998-01-24
Release date:1998-04-29
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Comparison of straight chain and cyclic unnatural amino acids embedded in the core of staphylococcal nuclease.
Protein Sci., 6, 1997
4ZT1
DownloadVisualize
BU of 4zt1 by Molmil
Crystal structure of human E-Cadherin (residues 3-213) in x-dimer conformation
Descriptor: CALCIUM ION, Cadherin-1
Authors:Nardone, V, Lucarelli, A.P, Dalle Vedove, A, Parisini, E.
Deposit date:2015-05-14
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Crystal Structure of Human E-Cadherin-EC1EC2 in Complex with a Peptidomimetic Competitive Inhibitor of Cadherin Homophilic Interaction.
J.Med.Chem., 59, 2016
4ZVI
DownloadVisualize
BU of 4zvi by Molmil
GYRASE B IN COMPLEX WITH 4,5-DIBROMOPYRROLAMIDE-BASED INHIBITOR
Descriptor: DNA gyrase subunit B, IODIDE ION, N-(4-{[(4,5-dibromo-1H-pyrrol-2-yl)carbonyl]amino}benzoyl)glycine
Authors:Zidar, N, Macut, H, Tomasic, T, Brvar, M, Montalvao, S, Tammela, P, Solmajer, T, Peterlin Masic, L, Ilas, J, Kikelj, D.
Deposit date:2015-05-18
Release date:2015-07-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:N-Phenyl-4,5-dibromopyrrolamides and N-Phenylindolamides as ATP Competitive DNA Gyrase B Inhibitors: Design, Synthesis, and Evaluation.
J.Med.Chem., 58, 2015
5A6I
DownloadVisualize
BU of 5a6i by Molmil
V122I Transthyretin structure in complex with Tolcalpone
Descriptor: TRANSTHYRETIN, Tolcapone
Authors:Reverter, D, Gallego, P, Santana, R, Ventura, S.
Deposit date:2015-06-26
Release date:2016-02-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Repositioning Tolcapone as a Potent Inhibitor of Transthyretin Amyloidogenesis and its Associated Cellular Toxicity
Nat.Commun., 7, 2016
1AGS
DownloadVisualize
BU of 1ags by Molmil
A SURFACE MUTANT (G82R) OF A HUMAN ALPHA-GLUTATHIONE S-TRANSFERASE SHOWS DECREASED THERMAL STABILITY AND A NEW MODE OF MOLECULAR ASSOCIATION IN THE CRYSTAL
Descriptor: GLUTATHIONE S-TRANSFERASE ALPHA, S-HEXYLGLUTATHIONE
Authors:Zeng, K, Rose, J.P, Wang, B.C.
Deposit date:1995-01-23
Release date:1995-07-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A surface mutant (G82R) of a human alpha-glutathione S-transferase shows decreased thermal stability and a new mode of molecular association in the crystal.
Proteins, 20, 1994
4ZTE
DownloadVisualize
BU of 4zte by Molmil
Crystal structure of human E-Cadherin (residues 3-213) in complex with a peptidomimetic inhibitor
Descriptor: CALCIUM ION, Cadherin-1, N-{[(2S,5S)-1-benzyl-5-(2-{[(2S,3S)-1-(tert-butylamino)-3-methyl-1-oxopentan-2-yl]amino}-2-oxoethyl)-3,6-dioxopiperazin-2-yl]methyl}-L-alpha-asparagine
Authors:Nardone, V, Lucarelli, A.P, Dalle Vedove, A, Parisini, E.
Deposit date:2015-05-14
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of Human E-Cadherin-EC1EC2 in Complex with a Peptidomimetic Competitive Inhibitor of Cadherin Homophilic Interaction.
J.Med.Chem., 59, 2016
1A3T
DownloadVisualize
BU of 1a3t by Molmil
STAPHYLOCOCCAL NUCLEASE, V23C VARIANT, COMPLEX WITH 2-FLUOROETHANE THIOL AND 3',5'-THYMIDINE DIPHOSPHATE
Descriptor: CALCIUM ION, STAPHYLOCOCCAL NUCLEASE, THYMIDINE-3',5'-DIPHOSPHATE
Authors:Wynn, R, Harkins, P.C, Richards, F.M, Fox, R.O.
Deposit date:1998-01-24
Release date:1998-04-29
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Comparison of straight chain and cyclic unnatural amino acids embedded in the core of staphylococcal nuclease.
Protein Sci., 6, 1997
1ADR
DownloadVisualize
BU of 1adr by Molmil
DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE DNA-BINDING DOMAIN OF THE P22 C2 REPRESSOR (1-76) IN SOLUTION AND COMPARISON WITH THE DNA-BINDING DOMAIN OF THE 434 REPRESSOR
Descriptor: P22 C2 REPRESSOR
Authors:Sevillasierra, P, Otting, G, Wuthrich, K.
Deposit date:1993-07-19
Release date:1994-01-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Determination of the nuclear magnetic resonance structure of the DNA-binding domain of the P22 c2 repressor (1 to 76) in solution and comparison with the DNA-binding domain of the 434 repressor.
J.Mol.Biol., 235, 1994
1B0U
DownloadVisualize
BU of 1b0u by Molmil
ATP-BINDING SUBUNIT OF THE HISTIDINE PERMEASE FROM SALMONELLA TYPHIMURIUM
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, HISTIDINE PERMEASE
Authors:Hung, L.-W, Wang, I.X, Nikaido, K, Liu, P.-Q, Ames, G.F.-L, Kim, S.-H.
Deposit date:1998-11-12
Release date:1999-11-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the ATP-binding subunit of an ABC transporter.
Nature, 396, 1998
1B09
DownloadVisualize
BU of 1b09 by Molmil
HUMAN C-REACTIVE PROTEIN COMPLEXED WITH PHOSPHOCHOLINE
Descriptor: CALCIUM ION, PHOSPHOCHOLINE, PROTEIN (C-REACTIVE PROTEIN)
Authors:Thompson, D, Pepys, M.B, Wood, S.P.
Deposit date:1998-11-18
Release date:1999-12-03
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The physiological structure of human C-reactive protein and its complex with phosphocholine.
Structure Fold.Des., 7, 1999
1AVG
DownloadVisualize
BU of 1avg by Molmil
THROMBIN INHIBITOR FROM TRIATOMA PALLIDIPENNIS
Descriptor: THROMBIN, TRIABIN
Authors:Fuentes-Prior, P, Huber, R, Bode, W.
Deposit date:1997-09-16
Release date:1998-12-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the thrombin complex with triabin, a lipocalin-like exosite-binding inhibitor derived from a triatomine bug.
Proc.Natl.Acad.Sci.USA, 94, 1997
8WIM
DownloadVisualize
BU of 8wim by Molmil
Crystal structure of Jingmen tick virus RNA-dependent RNA polymerase (D307 construct)
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Jingmen tick virus NSP1, ...
Authors:Wang, X, Jing, X, Deng, F, Gong, P.
Deposit date:2023-09-24
Release date:2024-01-17
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:A jingmenvirus RNA-dependent RNA polymerase structurally resembles the flavivirus counterpart but with different features at the initiation phase.
Nucleic Acids Res., 52, 2024
8WI9
DownloadVisualize
BU of 8wi9 by Molmil
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Kumar, N, Sharma, S, Kaushal, P.S.
Deposit date:2023-09-24
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Nat Commun, 15, 2024
8WHY
DownloadVisualize
BU of 8why by Molmil
Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Kumar, N, Sharma, S, Kaushal, P.S.
Deposit date:2023-09-23
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Nat Commun, 15, 2024
8WIC
DownloadVisualize
BU of 8wic by Molmil
Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Kumar, N, Sharma, S, Kaushal, P.S.
Deposit date:2023-09-24
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Nat Commun, 15, 2024
8WI8
DownloadVisualize
BU of 8wi8 by Molmil
Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, bS1 and RafH.
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Kumar, N, Sharma, S, Kaushal, P.S.
Deposit date:2023-09-24
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Nat Commun, 15, 2024
4RUR
DownloadVisualize
BU of 4rur by Molmil
Yeast 20S proteasome in complex with the alkaloid indolo-phakellin (4)
Descriptor: (2E,3aR,14aS)-9-bromo-2-imino-1,2,3,5,6,14a-hexahydro-4H,8H-imidazo[4',5':5,6]pyrrolo[1',2':4,5]pyrazino[1,2-a]indol-8-one, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Beck, P, Lansdell, T.A, Hewlett, N.M, Tepe, J.J, Groll, M.
Deposit date:2014-11-21
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Indolo-Phakellins as beta 5-Specific Noncovalent Proteasome Inhibitors.
Angew.Chem.Int.Ed.Engl., 54, 2015
4TKO
DownloadVisualize
BU of 4tko by Molmil
Structure of the periplasmic adaptor protein EmrA
Descriptor: EmrA, ISOPROPYL ALCOHOL, MAGNESIUM ION
Authors:Hinchliffe, P, Greene, N.P, Paterson, N.G, Crow, A, Hughes, C, Koronakis, V.
Deposit date:2014-05-27
Release date:2014-07-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of the periplasmic adaptor protein from a major facilitator superfamily (MFS) multidrug efflux pump.
Febs Lett., 588, 2014
9IJ6
DownloadVisualize
BU of 9ij6 by Molmil
Crystal structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with Adenosine phosphate at 2.40 A resolution.
Descriptor: ADENOSINE MONOPHOSPHATE, Glyceraldehyde-3-phosphate dehydrogenase, MAGNESIUM ION, ...
Authors:Viswanathan, V, Kumari, A, Singh, A, Kumar, A, Sharma, P, Chopra, S, Jeyakanthan, J, Sharma, S, Raje, C.I, Singh, T.P.
Deposit date:2024-06-21
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the complex of erythrose-4-phosphate dehydrogenase from Acinetobacter baumannii with Adenosine phosphate at 2.40 A resolution.
To Be Published
4RNK
DownloadVisualize
BU of 4rnk by Molmil
Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAATTTGGAG)
Descriptor: GGAAAATTTGGAG, MAGNESIUM ION
Authors:Saoji, M.M, Paukstelis, P.J.
Deposit date:2014-10-24
Release date:2015-06-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Probing the role of sequence in the assembly of three-dimensional DNA crystals.
Biopolymers, 103, 2015
8WID
DownloadVisualize
BU of 8wid by Molmil
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Kumar, N, Sharma, S, Kaushal, P.S.
Deposit date:2023-09-24
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Nat Commun, 15, 2024
4ESM
DownloadVisualize
BU of 4esm by Molmil
Crystallographic structure of phenylalanine hydroxylase from Chromobacterium violaceum Y155A mutation
Descriptor: COBALT (II) ION, Phenylalanine-4-hydroxylase
Authors:Ronau, J.A, Paul, L.P, Corn, I.R, Wagner, K.T, Abu-Omar, M.M, Das, C.
Deposit date:2012-04-23
Release date:2013-05-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:An additional substrate binding site in a bacterial phenylalanine hydroxylase.
Eur.Biophys.J., 42, 2013
8Y9X
DownloadVisualize
BU of 8y9x by Molmil
Crystal structure of the complex of lactoperoxidase with four inorganic substrates, SCN, I, Br and Cl
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BROMIDE ION, CALCIUM ION, ...
Authors:Viswanathan, V, Singh, A.K, Pandey, N, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2024-02-07
Release date:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural evidence for the order of preference of inorganic substrates in mammalian heme peroxidases: crystal structure of the complex of lactoperoxidase with four inorganic substrates, SCN, I, Br and Cl
To Be Published
8WIF
DownloadVisualize
BU of 8wif by Molmil
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Kumar, N, Sharma, S, Kaushal, P.S.
Deposit date:2023-09-24
Release date:2024-02-28
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH.
Nat Commun, 15, 2024

223166

数据于2024-07-31公开中

PDB statisticsPDBj update infoContact PDBjnumon