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PDB: 45697 results

6OV7
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BU of 6ov7 by Molmil
CFTR Associated Ligand (CAL) PDZ domain bound to peptide kCAL01
Descriptor: Golgi-associated PDZ and coiled-coil motif-containing protein, kCAL01 peptide
Authors:Gill, N.P, Madden, D.R.
Deposit date:2019-05-07
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand.
J.Phys.Chem.B, 123, 2019
5L4J
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BU of 5l4j by Molmil
Crystal Structure of Human Transthyretin in Complex with 4,4'-Dihydroxydiphenyl sulfone (Bisphenol S, BPS)
Descriptor: 4-(4-hydroxyphenyl)sulfonylphenol, SODIUM ION, Transthyretin
Authors:Grundstrom, C, Hall, M, Zhang, J, Olofsson, A, Andersson, P, Sauer-Eriksson, A.E.
Deposit date:2016-05-25
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Structure-Based Virtual Screening Protocol for in Silico Identification of Potential Thyroid Disrupting Chemicals Targeting Transthyretin.
Environ. Sci. Technol., 50, 2016
5HVH
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BU of 5hvh by Molmil
Crystal Structure of Thrombin-activatable Fibrinolysis Inhibitor in Complex with two Inhibitory Nanobodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Carboxypeptidase B2, ...
Authors:Zhou, X, Weeks, S.D, Strelkov, S.V, Declerck, P.J.
Deposit date:2016-01-28
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Elucidation of the molecular mechanisms of two nanobodies that inhibit thrombin-activatable fibrinolysis inhibitor activation and activated thrombin-activatable fibrinolysis inhibitor activity.
J.Thromb.Haemost., 14, 2016
1IGR
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BU of 1igr by Molmil
Type 1 Insulin-like growth factor receptor (DOMAINS 1-3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, INSULIN-LIKE GROWTH FACTOR RECEPTOR 1, ...
Authors:Garrett, T.P.J, Mckern, N.M, Lou, M, Frenkel, M.J, Bentley, J.D, Lovrecz, G.O, Elleman, T.C, Cosgrove, L.J, Ward, C.W.
Deposit date:1998-09-28
Release date:1999-09-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the first three domains of the type-1 insulin-like growth factor receptor.
Nature, 394, 1998
5A5N
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BU of 5a5n by Molmil
Crystal structure of human ATAD2 bromodomain in complex with (2S)-2,6- diacetamido-N-methylhexanamide
Descriptor: (2S)-2,6-diacetamido-N-methyl-hexanamide, 1,2-ETHANEDIOL, ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2, ...
Authors:Chung, C, Bamborough, P, Demont, E.
Deposit date:2015-06-20
Release date:2015-07-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors.
J.Med.Chem., 58, 2015
6A8N
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BU of 6a8n by Molmil
The crystal structure of muPAin-1-IG-2 in complex with muPA-SPD at pH8.5
Descriptor: CYS-PRO-ALA-TYR-SER-ARG-TYR-ILE-GLY-CYS, Urokinase-type plasminogen activator B
Authors:Wang, D, Yang, Y.S, Jiang, L.G, Huang, M.D, Li, J.Y, Andreasen, P.A, Xu, P, Chen, Z.
Deposit date:2018-07-09
Release date:2019-02-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.489 Å)
Cite:Suppression of Tumor Growth and Metastases by Targeted Intervention in Urokinase Activity with Cyclic Peptides.
J.Med.Chem., 62, 2019
5L7Q
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BU of 5l7q by Molmil
Structure of deformed wing virus, a honeybee pathogen
Descriptor: VP1, vp2, vp3
Authors:Skubnik, K, Novacek, J, Fuzik, T, Pridal, A, Paxton, R, Plevka, P.
Deposit date:2016-06-03
Release date:2017-03-29
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8TO5
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BU of 8to5 by Molmil
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Descriptor: C-phycocyanin alpha subunit, C-phycocyanin beta subunit, PHYCOCYANOBILIN, ...
Authors:Sauer, P.V, Sutter, M, Cupellini, L.
Deposit date:2023-08-02
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (1.87 Å)
Cite:Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes.
Sci Adv, 10, 2024
7Z03
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BU of 7z03 by Molmil
Endonuclease state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and extended dsDNA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (39-MER), MAGNESIUM ION, ...
Authors:Gut, F, Kaeshammer, L, Lammens, K, Bartho, J, van de Logt, E, Kessler, B, Hopfner, K.P.
Deposit date:2022-02-21
Release date:2022-08-17
Last modified:2022-09-28
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural mechanism of endonucleolytic processing of blocked DNA ends and hairpins by Mre11-Rad50.
Mol.Cell, 82, 2022
5A5Q
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BU of 5a5q by Molmil
Crystal structure of human ATAD2 bromodomain in complex with 3-methyl- 8-piperidin-4-ylamino-1,2-dihydro-1,7-naphthyridin-2-one hydrochloride
Descriptor: 1,2-ETHANEDIOL, 3-methyl-8-[(piperidin-4-yl)amino]-1,2-dihydro-1,7-naphthyridin-2-one, ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2, ...
Authors:Chung, C, Bamborough, P, Demont, E.
Deposit date:2015-06-20
Release date:2015-07-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors.
J.Med.Chem., 58, 2015
5A5P
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BU of 5a5p by Molmil
Crystal structure of human ATAD2 bromodomain in complex with 8-2-(dimethylamino)ethylamino-3-methyl-1,2-dihydroquinolin-2-one
Descriptor: 1,2-ETHANEDIOL, 8-{[2-(dimethylamino)ethyl]amino}-3-methyl-1,2-dihydroquinolin-2-one, ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2, ...
Authors:Chung, C, Bamborough, P, Demont, E.
Deposit date:2015-06-20
Release date:2015-07-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors.
J.Med.Chem., 58, 2015
8TPJ
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BU of 8tpj by Molmil
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Descriptor: Allophycocyanin alpha chain, Allophycocyanin beta chain, Orange carotenoid-binding protein, ...
Authors:Sauer, P.V, Sutter, M, Cupellini, L.
Deposit date:2023-08-04
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (2.1 Å)
Cite:Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes.
Sci Adv, 10, 2024
4WFO
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BU of 4wfo by Molmil
manganese-substituted soybean lipoxygenase-1
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, MANGANESE (II) ION, ...
Authors:Carr, C.A.M, Scouras, A.D, Klinman, J.P.
Deposit date:2014-09-16
Release date:2015-09-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Direct detection of active-site geometries in soybean lipoxygenase-1 by ENDOR
To Be Published
6ZVC
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BU of 6zvc by Molmil
14-3-3 Sigma in complex with phosphorylated Gab2pT391 peptide - 48h incubation
Descriptor: 14-3-3 protein sigma, MAGNESIUM ION, phosphorylated Gab2pT391 peptide
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-07-24
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:A new soaking procedure for X-ray crystallography structural determination of protein-peptide complexes
To Be Published
6TWS
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BU of 6tws by Molmil
Crystal structure of the haemagglutinin mutant (Gln226Leu, Gly228Ser) from an H10N7 seal influenza virus isolated in Germany with 2mM EDTA
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, J, Xiong, X, Purkiss, A, Walker, P, Gamblin, S, Skehel, J.J.
Deposit date:2020-01-13
Release date:2020-10-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Cell Host Microbe, 28, 2020
6ZVB
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BU of 6zvb by Molmil
14-3-3 Sigma in complex with phosphorylated Gab2pT391 peptide - 24h incubation
Descriptor: 14-3-3 protein sigma, MAGNESIUM ION, phosphorylated Gab2pT391 peptide
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-07-24
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:A new soaking procedure for X-ray crystallography structural determination of protein-peptide complexes
To Be Published
6ZVD
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BU of 6zvd by Molmil
14-3-3 Sigma in complex with phosphorylated Gab2pT391 peptide - 96h incubation
Descriptor: 14-3-3 protein sigma, MAGNESIUM ION, phosphorylated Gab2pT391 peptide
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-07-24
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A new soaking procedure for X-ray crystallography structural determination of protein-peptide complexes
To Be Published
5LB5
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BU of 5lb5 by Molmil
Crystal structure of human RECQL5 helicase in complex with ADP/Mg (tricilinc form).
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase Q5, DIMETHYL SULFOXIDE, ...
Authors:Newman, J.A, Aitkenhead, H, Savitsky, P, Krojer, T, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Gileadi, O, Structural Genomics Consortium (SGC)
Deposit date:2016-06-15
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Insights into the RecQ helicase mechanism revealed by the structure of the helicase domain of human RECQL5.
Nucleic Acids Res., 45, 2017
6ZVE
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BU of 6zve by Molmil
14-3-3 Sigma in complex with phosphorylated Gab2pT391 peptide - 1h incubation
Descriptor: 14-3-3 protein sigma, MAGNESIUM ION, phosphorylated Gab2pT391 peptide
Authors:Ballone, A, Lau, R.A, Zweipfenning, F.P.A, Ottmann, C.
Deposit date:2020-07-24
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:A new soaking procedure for X-ray crystallography structural determination of protein-peptide complexes
To Be Published
6OL4
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BU of 6ol4 by Molmil
Protein Tyrosine Phosphatase 1B (1-301), F182A mutant, apo state
Descriptor: GLYCEROL, Tyrosine-protein phosphatase non-receptor type 1
Authors:Cui, D.S, Lipchock, J.M, Loria, J.P.
Deposit date:2019-04-15
Release date:2020-03-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Uncovering the Molecular Interactions in the Catalytic Loop That Modulate the Conformational Dynamics in Protein Tyrosine Phosphatase 1B.
J.Am.Chem.Soc., 141, 2019
6OLT
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BU of 6olt by Molmil
Crosslinked Crystal Structure of Type II Fatty Acid Synthase Ketosynthase, FabF, and C12-crypto Acyl Carrier Protein, AcpP
Descriptor: 3-oxoacyl-[acyl-carrier-protein] synthase 2, Acyl carrier protein, N-[2-(dodecanoylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide
Authors:Mindrebo, J.T, Kim, W.E, Bartholow, T.G, Chen, A, Davis, T.D, La Clair, J, Burkart, M.D, Noel, J.P.
Deposit date:2019-04-17
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Gating mechanism of elongating beta-ketoacyl-ACP synthases.
Nat Commun, 11, 2020
5I2I
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BU of 5i2i by Molmil
Structure of cetuximab Fab with cyclic F3Q variant of the meditope
Descriptor: Cetuximab Fab heavy chain, Cetuximab Fab light chain, Meditope, ...
Authors:Bzymek, K.P, Williams, J.C.
Deposit date:2016-02-08
Release date:2016-10-26
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.551 Å)
Cite:Natural and non-natural amino-acid side-chain substitutions: affinity and diffraction studies of meditope-Fab complexes.
Acta Crystallogr F Struct Biol Commun, 72, 2016
6ZZA
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BU of 6zza by Molmil
Crystal structure of CbpB in complex with c-di-AMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, CBS domain-containing protein, SULFATE ION
Authors:Mechaly, A.E, Covaleda-Cortes, G, Kaminski, P.A.
Deposit date:2020-08-04
Release date:2021-08-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.491 Å)
Cite:Crystal structure of CbpB in complex with c-di-AMP
To Be Published
3HQ5
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BU of 3hq5 by Molmil
Progesterone Receptor bound to an Alkylpyrrolidine ligand.
Descriptor: 2-chloro-4-{[(3S)-1-methylpyrrolidin-3-yl][2-(trifluoromethyl)benzyl]amino}benzonitrile, GLYCEROL, Progesterone receptor, ...
Authors:Madauss, K.P, Williams, S.P, Washburn, D.G.
Deposit date:2009-06-05
Release date:2010-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Rational design of orally-active, pyrrolidine-based progesterone receptor partial agonists.
Bioorg.Med.Chem.Lett., 19, 2009
7ZG7
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BU of 7zg7 by Molmil
Structure of human Apoferritin obtained from ssDNA coated grid
Descriptor: Ferritin heavy chain, SODIUM ION, ZINC ION
Authors:Hrebik, D, Plevka, P.
Deposit date:2022-04-02
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (1.77 Å)
Cite:Polyelectrolyte coating of cryo-EM grids improves lateral distribution and prevents aggregation of macromolecules.
Acta Crystallogr D Struct Biol, 78, 2022

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