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PDB: 45955 results

5QJM
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BU of 5qjm by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z328695024
Descriptor: 1,2-ETHANEDIOL, ADP-sugar pyrophosphatase, CHLORIDE ION, ...
Authors:Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F.
Deposit date:2018-10-31
Release date:2018-12-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
5QK2
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BU of 5qk2 by Molmil
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT5 in complex with Z54628578
Descriptor: 1,2-ETHANEDIOL, ADP-sugar pyrophosphatase, CHLORIDE ION, ...
Authors:Dubianok, Y, Collins, P, Krojer, T, Wright, N, Strain-Damerell, C, Burgess-Brown, N, Bountra, C, Arrowsmith, C.H, Edwards, A, Huber, K, von Delft, F.
Deposit date:2018-10-31
Release date:2018-12-19
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
To Be Published
4KMK
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BU of 4kmk by Molmil
Crystal structure of Ribosome Inactivating protein from Momordica balsamina at 1.65 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase
Authors:Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2013-05-08
Release date:2013-05-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of Ribosome Inactivating protein from Momordica balsamina at 1.65 A resolution
To be Published
1FFJ
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BU of 1ffj by Molmil
NMR STRUCTURE OF CARDIOTOXIN IN DPC-MICELLE
Descriptor: CYTOTOXIN 2
Authors:Dubovskii, P.V, Dementieva, D.V, Bocharov, E.V, Utkin, Y.N, Arseniev, A.S.
Deposit date:2000-07-25
Release date:2001-01-17
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Membrane binding motif of the P-type cardiotoxin.
J.Mol.Biol., 305, 2001
7LDE
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BU of 7lde by Molmil
native AMPA receptor
Descriptor: 11B8 scFv, 15F1 Fab heavy chain, 15F1 Fab light chain, ...
Authors:Yu, J, Rao, P, Gouaux, E.
Deposit date:2021-01-13
Release date:2021-05-12
Last modified:2021-06-30
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Hippocampal AMPA receptor assemblies and mechanism of allosteric inhibition.
Nature, 594, 2021
7LDD
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BU of 7ldd by Molmil
native AMPA receptor
Descriptor: 11B8 scFv, 15F1 Fab heavy chain, 15F1 Fab light chain, ...
Authors:Yu, J, Rao, P, Gouaux, E.
Deposit date:2021-01-13
Release date:2021-05-12
Last modified:2021-06-30
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Hippocampal AMPA receptor assemblies and mechanism of allosteric inhibition.
Nature, 594, 2021
1FEB
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BU of 1feb by Molmil
UNLIGANDED CRITHIDIA FASCICULATA TRYPANOTHIONE REDUCTASE AT 2.0 ANGSTROM RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, TRYPANOTHIONE REDUCTASE
Authors:Strickland, C, Karplus, P.
Deposit date:1995-07-12
Release date:1997-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crithidia Fasciculata Trypanothione Reductase at 1.70 A Resolution
To be Published
7KC1
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Cryo-EM structure of SRR2899884.46167H+MEDI8852L fab in complex with Victoria HA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab heavy chain, Fab light chain, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2020-10-04
Release date:2021-05-12
Last modified:2021-07-14
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Sequence-Signature Optimization Enables Improved Identification of Human HV6-1-Derived Class Antibodies That Neutralize Diverse Influenza A Viruses.
Front Immunol, 12, 2021
4H2E
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BU of 4h2e by Molmil
Crystal structure of an MMP twin inhibitor complexing two MMP-9 catalytic domains
Descriptor: ACETATE ION, BICINE, CALCIUM ION, ...
Authors:Stura, E.A, Vera, L, Cassar-Lajeunesse, E, Nuti, E, Catalani, M.P, Dive, V, Rossello, A.
Deposit date:2012-09-12
Release date:2013-04-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Crystallization of bi-functional ligand protein complexes.
J.Struct.Biol., 182, 2013
2HCA
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BU of 2hca by Molmil
Crystal structure of bovine lactoferrin C-lobe liganded with Glucose at 2.8 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, FE (III) ION, ...
Authors:Mir, R, Prem Kumar, R, Ethayathulla, A.S, Singh, N, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
Deposit date:2006-06-15
Release date:2006-06-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of bovine lactoferrin C-lobe liganded with Glucose at 2.8 A resolution
To be Published
1MX9
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BU of 1mx9 by Molmil
Crystal Structure of Human Liver Carboxylesterase in complexed with naloxone methiodide, a heroin analogue
Descriptor: (5A,17R)-4,5-EPOXY-3,14-DIHYDROXY-17-METHYL-6-OXO-17-(2-PROPENYL)-MORPHINANIUM, 2-acetamido-2-deoxy-beta-D-glucopyranose, liver Carboxylesterase I
Authors:Bencharit, S, Morton, C.L, Xue, Y, Potter, P.M, Redinbo, M.R.
Deposit date:2002-10-01
Release date:2003-04-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis of Heroin and Cocaine Metabolism by a Promiscuous Human Drug-Processing Enzyme
Nat.Struct.Biol., 10, 2003
3HZT
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BU of 3hzt by Molmil
Crystal structure of Toxoplasma gondii CDPK3, TGME49_105860
Descriptor: 5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE, Calcium-dependent protein kinase 3, GLYCEROL, ...
Authors:Wernimont, A.K, Artz, J.D, Finnerty, P, Wasney, G, Allali-Hassani, A, Vedadi, M, Bochkarev, A, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Hui, R, Amani, M, Structural Genomics Consortium (SGC)
Deposit date:2009-06-24
Release date:2009-07-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium.
Nat.Struct.Mol.Biol., 17, 2010
1XJJ
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BU of 1xjj by Molmil
Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dGTP complex
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ribonucleotide reductase, ...
Authors:Larsson, K.-M, Jordan, A, Eliasson, R, Reichard, P, Logan, D.T, Nordlund, P.
Deposit date:2004-09-23
Release date:2005-12-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structural Mechanism of Allosteric Substrate Specificity Regulation in a Ribonucleotide Reductase
Nat.Struct.Mol.Biol., 11, 2005
2HA6
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BU of 2ha6 by Molmil
Crystal structure of mutant S203A of mouse acetylcholinesterase complexed with succinylcholine
Descriptor: 2,2'-[(1,4-DIOXOBUTANE-1,4-DIYL)BIS(OXY)]BIS(N,N,N-TRIMETHYLETHANAMINIUM), ACETIC ACID, Acetylcholinesterase, ...
Authors:Bourne, Y, Radic, Z, Sulzenbacher, G, Kim, E, Taylor, P, Marchot, P.
Deposit date:2006-06-12
Release date:2006-07-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Substrate and product trafficking through the active center gorge of acetylcholinesterase analyzed by crystallography and equilibrium binding
J.Biol.Chem., 281, 2006
2AWQ
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BU of 2awq by Molmil
Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe
Descriptor: 5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3'
Authors:Cabello-Villegas, J, Nikonowicz, E.P.
Deposit date:2005-09-01
Release date:2006-01-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
Nucleic Acids Res., 33, 2005
7JV3
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BU of 7jv3 by Molmil
Crystal structure of alkanesulfonate monooxygenase MsuD from Pseudomonas fluorescens
Descriptor: Alkanesulfonate monooxygenase
Authors:Liew, J.J.M, Dowling, D.P.
Deposit date:2020-08-20
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of the alkanesulfonate monooxygenase MsuD provide insight into C-S bond cleavage, substrate scope, and an unexpected role for the tetramer.
J.Biol.Chem., 297, 2021
4BKO
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BU of 4bko by Molmil
Enoyl-ACP reducatase FabV from Burkholderia pseudomallei (apo)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, PUTATIVE REDUCTASE BURPS305_1051, ...
Authors:Hirschbeck, M.W, Neckles, C, Tonge, P.J, Kisker, C.
Deposit date:2013-04-29
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Point Mutation Changes Substrate Binding Mechanism and Inhibitor Specificity of Yersinia Pestis Enoyl- Acp Reductase Fabv
To be Published
3HMJ
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BU of 3hmj by Molmil
Saccharomyces cerevisiae FAS type I
Descriptor: (2S, 3R)-3-HYDROXY-4-OXO-7,10-TRANS,TRANS-DODECADIENAMIDE, FLAVIN MONONUCLEOTIDE, ...
Authors:Johansson, P, Mulinacci, B, Koestler, C, Vollrath, R, Oesterhelt, D, Grininger, M.
Deposit date:2009-05-29
Release date:2009-09-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (4 Å)
Cite:Multimeric options for the auto-activation of the Saccharomyces cerevisiae FAS type I megasynthase
Structure, 17, 2009
1XJG
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BU of 1xjg by Molmil
Structural mechanism of allosteric substrate specificity in a ribonucleotide reductase: dATP-UDP complex
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, MAGNESIUM ION, URIDINE-5'-DIPHOSPHATE, ...
Authors:Larsson, K.-M, Jordan, A, Eliasson, R, Reichard, P, Logan, D.T, Nordlund, P.
Deposit date:2004-09-23
Release date:2005-12-20
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Mechanism of Allosteric Substrate Specificity Regulation in a Ribonucleotide Reductase
Nat.Struct.Mol.Biol., 11, 2004
7JZ1
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BU of 7jz1 by Molmil
Crystal structure of broadly Plasmodium RIFIN reactive LAIR1-inserted antibody MGC34
Descriptor: MGC34 heavy chain, MGC34 light chain
Authors:Xu, K, Kwong, P.D.
Deposit date:2020-09-01
Release date:2021-05-26
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.37 Å)
Cite:Structural basis of LAIR1 targeting by polymorphic Plasmodium RIFINs.
Nat Commun, 12, 2021
4S0J
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BU of 4s0j by Molmil
Biphenylalanine modified threonyl-tRNA synthetase from Pyrococcus abyssi: 11BIF, 42F, 79S, and 123V mutant
Descriptor: Threonine--tRNA ligase
Authors:Pearson, A.D, Mills, J.H, Song, Y, Nasertorabi, F, Han, G.W, Baker, D, Stevens, R.C, Schultz, P.G.
Deposit date:2014-12-31
Release date:2015-03-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Transition states. Trapping a transition state in a computationally designed protein bottle.
Science, 347, 2015
1RJ9
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BU of 1rj9 by Molmil
Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition Particle (Ffh) and Its Receptor (FtsY)
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Signal Recognition Protein, ...
Authors:Egea, P.F, Shan, S.O, Napetschnig, J, Savage, D.F, Walter, P, Stroud, R.M.
Deposit date:2003-11-18
Release date:2004-01-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Substrate twinning activates the signal recognition particle and its receptor
Nature, 427, 2004
1XPO
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BU of 1xpo by Molmil
Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin
Descriptor: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', BICYCLOMYCIN, MAGNESIUM ION, ...
Authors:Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
Deposit date:2004-10-09
Release date:2005-02-08
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
2B8K
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BU of 2b8k by Molmil
12-subunit RNA Polymerase II
Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ...
Authors:Meyer, P.A, Ye, P, Zhang, M, Suh, M.H, Fu, J.
Deposit date:2005-10-07
Release date:2006-06-20
Last modified:2012-06-13
Method:X-RAY DIFFRACTION (4.15 Å)
Cite:Phasing RNA Polymerase II Using Intrinsically Bound Zn Atoms: An Updated Structural Model.
Structure, 14, 2006
4H35
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BU of 4h35 by Molmil
Feruloyl Esterase Domain of XYNY from Clostridium thermocellum before exposure to 266nm UV laser
Descriptor: CADMIUM ION, Endo-1,4-beta-xylanase Y
Authors:Pereira, P.J.B, de Sanctis, D.
Deposit date:2012-09-13
Release date:2012-12-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:In-house UV radiation-damage-induced phasing of selenomethionine-labeled protein structures.
J.Struct.Biol., 181, 2013

224004

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