Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 45910 件

5N5G
DownloadVisualize
BU of 5n5g by Molmil
Crystal structure of di-zinc metallo-beta-lactamase VIM-1
分子名称: BICINE, Beta-lactamase VIM-1, ZINC ION
著者Salimraj, R, Hinchliffe, P, Spencer, J.
登録日2017-02-14
公開日2018-03-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.292 Å)
主引用文献Crystal structures of VIM-1 complexes explain active site heterogeneity in VIM-class metallo-beta-lactamases.
FEBS J., 286, 2019
1JRX
DownloadVisualize
BU of 1jrx by Molmil
Crystal structure of Arg402Ala mutant flavocytochrome c3 from Shewanella frigidimarina
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FLAVOCYTOCHROME C, FUMARIC ACID, ...
著者Mowat, C.G, Moysey, R, Miles, C.S, Leys, D, Doherty, M.K, Taylor, P, Walkinshaw, M.D, Reid, G.A, Chapman, S.K.
登録日2001-08-15
公開日2001-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Kinetic and crystallographic analysis of the key active site acid/base arginine in a soluble fumarate reductase.
Biochemistry, 40, 2001
5N6U
DownloadVisualize
BU of 5n6u by Molmil
Crystal structure of Beta-D-Mannosidase from Dictyoglomus thermophilum.
分子名称: Beta-mannosidase, beta-D-mannopyranose
著者Richet, N, Lafite, P.
登録日2017-02-16
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.08 Å)
主引用文献Is the acid/base catalytic residue mutation in beta-d-mannosidase DtMan from Dictyoglomus thermophilum sufficient enough to provide thioglycoligase activity?
Biochimie, 137, 2017
6HD8
DownloadVisualize
BU of 6hd8 by Molmil
Crystal structure of the potassium channel MtTMEM175 in complex with a Nanobody-MBP fusion protein
分子名称: DODECYL-BETA-D-MALTOSIDE, Nanobody,Maltose/maltodextrin-binding periplasmic protein, POTASSIUM ION, ...
著者Brunner, J.D, Jakob, R.P, Schulze, T, Neldner, Y, Moroni, A, Thiel, G, Maier, T, Schenck, S.
登録日2018-08-17
公開日2019-08-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for ion selectivity in TMEM175 K+channels.
Elife, 9, 2020
5T5U
DownloadVisualize
BU of 5t5u by Molmil
Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a methylpyridyl-dipihenyl-pyridine ligand
分子名称: 2-methyl-3-({[3'-(piperidin-4-yl)[1,1'-biphenyl]-4-yl]oxy}methyl)pyridine, Glycylpeptide N-tetradecanoyltransferase, TETRADECANOYL-COA
著者Robinson, D.A, Wyatt, P.G.
登録日2016-08-31
公開日2017-09-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Design and Synthesis of Brain Penetrant Trypanocidal N-Myristoyltransferase Inhibitors.
J. Med. Chem., 60, 2017
6HEA
DownloadVisualize
BU of 6hea by Molmil
PAN-proteasome in state 3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Majumder, P, Rudack, T, Beck, F, Baumeister, W.
登録日2018-08-20
公開日2018-12-26
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (7.04 Å)
主引用文献Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6HE4
DownloadVisualize
BU of 6he4 by Molmil
AAA-ATPase ring of PAN-proteasomes
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Majumder, P, Rudack, T, Beck, F, Baumeister, W.
登録日2018-08-20
公開日2018-12-26
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.85 Å)
主引用文献Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6LZQ
DownloadVisualize
BU of 6lzq by Molmil
Chitin-specific solute binding protein from Vibrio harveyi in complex with chitotriose.
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CALCIUM ION, ...
著者Kitaoku, Y, Ubonbal, P, Tran, L.T, Robinson, R.C, Suginta, W.
登録日2020-02-19
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A structural model for (GlcNAc) 2 translocation via a periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria.
J.Biol.Chem., 297, 2021
6M1X
DownloadVisualize
BU of 6m1x by Molmil
Crystal structure of Phosphoserine Phosphatase in complex with 3-Phosphoglyceric Acid from Entamoeba histolytica
分子名称: 3-PHOSPHOGLYCERIC ACID, PHOSPHATE ION, Phosphoglycerate mutase family protein
著者Kumari, P, Gourinath, S.
登録日2020-02-26
公開日2021-03-03
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Structural analysis of EhPSP in complex with 3-phosphoglyceric acid from Entamoeba histolytica reveals a basis for its lack of phosphoglycerate mutase activity.
Int.J.Biol.Macromol., 178, 2021
1FY5
DownloadVisualize
BU of 1fy5 by Molmil
Fusarium oxysporum trypsin at atomic resolution
分子名称: GLY-ALA-LYS, GLYCEROL, SULFATE ION, ...
著者Rypniewski, W.R, Oestergaard, P, Noerregaard-Madsen, M, Dauter, M, Wilson, K.S.
登録日2000-09-28
公開日2001-02-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (0.81 Å)
主引用文献Fusarium oxysporum trypsin at atomic resolution at 100 and 283 K: a study of ligand binding.
Acta Crystallogr.,Sect.D, 57, 2001
4YIY
DownloadVisualize
BU of 4yiy by Molmil
Structure of MRB1590 bound to AMP-PNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, kRNA Editing A6 Specific Protein
著者Shaw, P.L.R, Schumacher, M.A.
登録日2015-03-02
公開日2015-08-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.016 Å)
主引用文献Structures of the T. brucei kRNA editing factor MRB1590 reveal unique RNA-binding pore motif contained within an ABC-ATPase fold.
Nucleic Acids Res., 43, 2015
5NGR
DownloadVisualize
BU of 5ngr by Molmil
Crystal structure of human MTH1 in complex with fragment inhibitor 8-(methylsulfanyl)-7H-purin-6-amine
分子名称: 7,8-dihydro-8-oxoguanine triphosphatase, 8-methylsulfanyl-7~{H}-purin-6-amine, SULFATE ION
著者Gustafsson, R, Rudling, A, Almlof, I, Homan, E, Scobie, M, Warpman Berglund, U, Helleday, T, Carlsson, J, Stenmark, P.
登録日2017-03-20
公開日2017-10-04
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Fragment-Based Discovery and Optimization of Enzyme Inhibitors by Docking of Commercial Chemical Space.
J. Med. Chem., 60, 2017
4YKE
DownloadVisualize
BU of 4yke by Molmil
Crystal structure of eukaryotic Mre11 catalytic domain from Chaetomium thermophilum
分子名称: MANGANESE (II) ION, Mre11
著者Seifert, F.U, Lammens, K, Hopfner, K.-P.
登録日2015-03-04
公開日2015-06-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.783 Å)
主引用文献Structure of the catalytic domain of Mre11 from Chaetomium thermophilum.
Acta Crystallogr.,Sect.F, 71, 2015
2ORG
DownloadVisualize
BU of 2org by Molmil
Directing Macromolecular Conformation Through Halogen Bonds
分子名称: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(BRU)P*CP*GP*G)-3')
著者Voth, A.R, Hays, F.A, Ho, P.S.
登録日2007-02-02
公開日2007-03-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Directing macromolecular conformation through halogen bonds.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4YLW
DownloadVisualize
BU of 4ylw by Molmil
Crystal structure of human dihydroorotate dehydrogenase (DHODH) with No.33 compound
分子名称: Dihydroorotate dehydrogenase (quinone), mitochondrial, FLAVIN MONONUCLEOTIDE, ...
著者Wu, D, Ouyang, P, Lu, W, Huang, J.
登録日2015-03-06
公開日2016-03-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Crystal structure of human dihydroorotate dehydrogenase (DHODH) with No.33 compound
To Be Published
1OC3
DownloadVisualize
BU of 1oc3 by Molmil
HUMAN PEROXIREDOXIN 5
分子名称: BENZOIC ACID, PEROXIREDOXIN 5
著者Evrard, C, Declercq, J.-P.
登録日2003-02-05
公開日2004-02-10
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of a Dimeric Oxidized Form of Human Peroxiredoxin 5
J.Mol.Biol., 337, 2004
3JWN
DownloadVisualize
BU of 3jwn by Molmil
Complex of FimC, FimF, FimG and FimH
分子名称: Chaperone protein fimC, FimH protein, GLYCEROL, ...
著者Le Trong, I, Aprikian, P, Stenkamp, R.E, Sokurenko, E.V.
登録日2009-09-18
公開日2010-06-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting.
Cell(Cambridge,Mass.), 141, 2010
5SXX
DownloadVisualize
BU of 5sxx by Molmil
Crystal structure of the E198A variant of Burkholderia pseudomallei catalase-peroxidase KatG with INH
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Catalase-peroxidase, ...
著者Loewen, P.C.
登録日2016-08-10
公開日2016-09-07
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Isonicotinic acid hydrazide conversion to Isonicotinyl-NAD by catalase-peroxidases.
J. Biol. Chem., 285, 2010
1S0T
DownloadVisualize
BU of 1s0t by Molmil
Solution structure of a DNA duplex containing an alpha-anomeric adenosine: insights into substrate recognition by endonuclease IV
分子名称: 5'-D(*Cp*Gp*Tp*Cp*Gp*Tp*Gp*Gp*Ap*C)-3', 5'-D(*Gp*Tp*Cp*Cp*(A3A)p*Cp*Gp*Ap*Cp*G)-3'
著者Aramini, J.M, Cleaver, S.H, Pon, R.T, Cunningham, R.P, Germann, M.W.
登録日2004-01-04
公開日2004-04-20
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of a DNA Duplex Containing an alpha-Anomeric Adenosine: Insights into Substrate Recognition by Endonuclease IV.
J.Mol.Biol., 338, 2004
5SYU
DownloadVisualize
BU of 5syu by Molmil
Crystal structure of Burkholderia pseudomallei KatG E242Q variant
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Catalase-peroxidase, ...
著者Loewen, P.C.
登録日2016-08-12
公開日2016-09-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Catalase Activity of Catalase-Peroxidases Is Modulated by Changes in the pKa of the Distal Histidine.
Biochemistry, 56, 2017
5T1K
DownloadVisualize
BU of 5t1k by Molmil
Cetuximab Fab in complex with CQFDA(Ph)2STRRLKC
分子名称: CETUXIMAB FAB HEAVY CHAIN, CETUXIMAB FAB LIGHT CHAIN, CQFDA(PH)2STRRLKC PEPTIDE, ...
著者Bzymek, K.P, Williams, J.C.
登録日2016-08-19
公開日2016-10-26
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Natural and non-natural amino-acid side-chain substitutions: affinity and diffraction studies of meditope-Fab complexes.
Acta Crystallogr F Struct Biol Commun, 72, 2016
5NIU
DownloadVisualize
BU of 5niu by Molmil
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor
分子名称: (2~{R})-2-[[2-[(3-cyanophenyl)methoxy]-4-[[3-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-methyl-phenyl]methylamino]-3-oxidanyl-propanoic acid, 1,2-ETHANEDIOL, Programmed cell death 1 ligand 1
著者Zak, K.M, Grudnik, P, Skalniak, L, Dubin, G, Holak, T.A.
登録日2017-03-27
公開日2017-12-06
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Small-molecule inhibitors of PD-1/PD-L1 immune checkpoint alleviate the PD-L1-induced exhaustion of T-cells.
Oncotarget, 8, 2017
7KE9
DownloadVisualize
BU of 7ke9 by Molmil
SARS-CoV-2 D614G 1-RBD-up Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Gobeil, S, Acharya, P.
登録日2020-10-10
公開日2020-11-04
最終更新日2021-03-31
実験手法ELECTRON MICROSCOPY (3.08 Å)
主引用文献D614G Mutation Alters SARS-CoV-2 Spike Conformation and Enhances Protease Cleavage at the S1/S2 Junction.
Cell Rep, 34, 2021
1KTI
DownloadVisualize
BU of 1kti by Molmil
BINDING OF 100 MM N-ACETYL-N'-BETA-D-GLUCOPYRANOSYL UREA TO GLYCOGEN PHOSPHORYLASE B: KINETIC AND CRYSTALLOGRAPHIC STUDIES
分子名称: GLYCOGEN PHOSPHORYLASE, MUSCLE FORM, N-(acetylcarbamoyl)-beta-D-glucopyranosylamine, ...
著者Oikonomakos, N.G, Kosmopoulou, M, Zographos, S.E, Leonidas, D.D, Chrysina, E.D, Somsak, L, Nagy, V, Praly, J.P, Docsa, T, Toth, B, Gergely, P.
登録日2002-01-16
公開日2002-01-30
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Binding of N-acetyl-N'-beta-D-glucopyranosyl urea and N-benzoyl-N'-beta-D-glucopyranosyl urea to glycogen phosphorylase b: kinetic and crystallographic studies.
Eur.J.Biochem., 269, 2002
5SVB
DownloadVisualize
BU of 5svb by Molmil
Mechanism of ATP-Dependent Acetone Carboxylation, Acetone Carboxylase AMP bound structure
分子名称: ADENOSINE MONOPHOSPHATE, Acetone carboxylase alpha subunit, Acetone carboxylase beta subunit, ...
著者Eilers, B.J, Mus, F, Alleman, A.B, Kabasakal, B.V, Murray, J.W, Nocek, B.P, Dubois, J.L, Peters, J.W.
登録日2016-08-05
公開日2017-08-09
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (2.645 Å)
主引用文献Structural Basis for the Mechanism of ATP-Dependent Acetone Carboxylation.
Sci Rep, 7, 2017

223790

件を2024-08-14に公開中

PDB statisticsPDBj update infoContact PDBjnumon