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PDB: 46375 件

4L56
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tRNA guanine transglycosylase H333D mutant apo structure
分子名称: GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION
著者Nguyen, T.X.P, Heine, A, Klebe, G.
登録日2013-06-10
公開日2014-12-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献What Glues a Homodimer Together: Systematic Analysis of the Stabilizing Effect of an Aromatic Hot Spot in the Protein-Protein Interface of the tRNA-Modifying Enzyme Tgt.
Acs Chem.Biol., 10, 2015
4L48
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Crystal structure of d78n mutant clavibacter michiganensis expansin in complex with cellohexaose
分子名称: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, cellulose binding protein
著者Yennawar, N.H, Yennawar, H.P, Georgelis, N, Cosgrove, D.
登録日2013-06-07
公開日2014-03-26
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of wild type and d78n mutant clavibacter michiganensis expansin, in apo form and in complex with oligosaccharides
To be Published
8VW8
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BU of 8vw8 by Molmil
UIC-13-BPE-AgNO3 silver binding with UIC-13-BPE
分子名称: NITRATE ION, SILVER ION, UIC-13-BPE-AgNO3 silver binding with UIC-13-BPE
著者Ganatra, P.
登録日2024-01-31
公開日2024-08-07
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
3ILA
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BU of 3ila by Molmil
Crystal structure of rabbit ryanodine receptor 1 N-terminal domain (9-205)
分子名称: Ryanodine receptor 1
著者Lobo, P.A, Van Petegem, F.
登録日2009-08-06
公開日2009-11-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structures of the N-terminal domains of cardiac and skeletal muscle ryanodine receptors: insights into disease mutations.
Structure, 17, 2009
1BZU
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BU of 1bzu by Molmil
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS, 3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
分子名称: TRNA
著者Durant, P.C, Davis, D.R.
登録日1998-11-05
公開日1999-04-27
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
J.Mol.Biol., 285, 1999
6AI9
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BU of 6ai9 by Molmil
Cab2 mutant-H337A complex with phosphopantothenate
分子名称: N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanine, Phosphopantothenate--cysteine ligase CAB2
著者Zheng, P, Zhu, Z.
登録日2018-08-22
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Crystallographic Analysis of the Catalytic Mechanism of Phosphopantothenoylcysteine Synthetase from Saccharomyces cerevisiae.
J. Mol. Biol., 431, 2019
8Y9C
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BU of 8y9c by Molmil
De novo design mini-binder in complex with TcdB4
分子名称: De novo design Minibinder, Toxin B, ZINC ION
著者Lv, X.C, Lu, P.L.
登録日2024-02-06
公開日2024-08-28
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献De novo design of mini-protein binders broadly neutralizing Clostridioides difficile toxin B variants.
Nat Commun, 15, 2024
8X2V
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BU of 8x2v by Molmil
Crystal structure of the ancestral GH19 chitinase, Anc4+LoopII (P12K/N13H mutant)
分子名称: GH19 chitinase
著者Kozome, D, Laurino, P.
登録日2023-11-10
公開日2024-04-03
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Remote loop evolution reveals a complex biological function for chitinase enzymes beyond the active site.
Nat Commun, 15, 2024
6T62
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BU of 6t62 by Molmil
Crystal structure of Acinetobacter baumannii FabG in complex with NADPH at 1.8 A resolution
分子名称: 3-oxoacyl-(Acyl-carrier-protein) reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Vella, P, Schnell, R, Schneider, G.
登録日2019-10-17
公開日2020-11-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A FabG inhibitor targeting an allosteric binding site inhibits several orthologs from Gram-negative ESKAPE pathogens.
Bioorg.Med.Chem., 30, 2020
6T5M
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BU of 6t5m by Molmil
Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.
分子名称: 2-methylisocitrate lyase, MAGNESIUM ION, PYRUVIC ACID
著者Wijaya, A.J, Brear, P, Dolan, S.K, Welch, M.
登録日2019-10-16
公開日2020-09-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.
To Be Published
9CK8
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BU of 9ck8 by Molmil
Lineage IV Lassa virus glycoprotein (Josiah) in complex with polyclonal antibody (GPC-A epitope) from rabbit 189
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Brouwer, P.J.M, Perrett, H.R, Ward, A.B.
登録日2024-07-08
公開日2024-09-25
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Defining bottlenecks and opportunities for Lassa virus neutralization by structural profiling of vaccine-induced polyclonal antibody responses.
Cell Rep, 43, 2024
7NZ1
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BU of 7nz1 by Molmil
Respiratory complex I from Escherichia coli - focused refinement of cytoplasmic arm
分子名称: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
著者Kolata, P, Efremov, R.G.
登録日2021-03-23
公開日2021-08-18
実験手法ELECTRON MICROSCOPY (2.1 Å)
主引用文献Structure of Escherichia coli respiratory complex I reconstituted into lipid nanodiscs reveals an uncoupled conformation.
Elife, 10, 2021
8WU3
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BU of 8wu3 by Molmil
Crystal structure of RNA-dependent RNA polymerases from Alongshan virus
分子名称: RNA polymerase
著者Liu, Z.Y, Han, P, Peng, Q, Qi, J.X.
登録日2023-10-20
公開日2024-02-07
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structures of RNA-dependent RNA polymerases from Jingmen tick virus and Alongshan virus
HLIFE, 2, 2024
8VPZ
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BU of 8vpz by Molmil
UIC-1-BPE1MER mutation of UIC-1-cap
分子名称: METHANOL, UIC-1-BPE1MER
著者Ganatra, P.
登録日2024-01-17
公開日2024-08-07
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
8VSF
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BU of 8vsf by Molmil
UIC-13-BPE extension of UIC-1
分子名称: ACETONITRILE, UIC-13-BPE
著者Ganatra, P.
登録日2024-01-24
公開日2024-08-07
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
9BKL
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BU of 9bkl by Molmil
Cobalt substituted rubredoxin from Pyrococcus furiosus solved by Co/S-SAD
分子名称: COBALT (II) ION, Rubredoxin
著者Zhou, D, Chen, L, Rose, J.P, Wang, B.C.
登録日2024-04-29
公開日2024-06-05
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Cobalt substituted rubredoxin from Pyrococcus furiosus solved by Co/S-SAD
To Be Published
9ASY
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BU of 9asy by Molmil
Crystal structure of SARS-CoV-2 3CL protease in complex with a m-chlorobenzyl 2-pyrrolidone inhibitor
分子名称: (1R,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, 3C-like proteinase nsp5, ...
著者Lovell, S, Cooper, A, Battaile, K.P, Dampalla, C.S, Groutas, W.C.
登録日2024-02-26
公開日2024-07-10
最終更新日2024-08-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure-Guided Design of Potent Coronavirus Inhibitors with a 2-Pyrrolidone Scaffold: Biochemical, Crystallographic, and Virological Studies.
J.Med.Chem., 67, 2024
8X6B
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BU of 8x6b by Molmil
Crystal structure of immune receptor PVRIG in complex with ligand Nectin-2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nectin-2, Transmembrane protein PVRIG
著者Hu, S.T, Han, P, Wang, H, Qi, J.X.
登録日2023-11-21
公開日2024-04-24
最終更新日2024-07-24
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the immune recognition and selectivity of the immune receptor PVRIG for ligand Nectin-2.
Structure, 32, 2024
4L7V
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BU of 4l7v by Molmil
Crystal structure of Protein L-isoaspartyl-O-methyltransferase of Vibrio cholerae
分子名称: ACETATE ION, CALCIUM ION, Protein-L-isoaspartate O-methyltransferase, ...
著者Chatterjee, T, Mukherjee, D, Chakrabarti, P.
登録日2013-06-14
公開日2014-06-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure and activity of protein L-isoaspartyl-O-methyltransferase from Vibrio cholerae, and the effect of AdoHcy binding.
Arch.Biochem.Biophys., 583, 2015
1BZ3
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BU of 1bz3 by Molmil
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE
分子名称: TRNA
著者Durant, P.C, Davis, D.R.
登録日1998-11-05
公開日1999-04-27
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and by pseudouridine.
J.Mol.Biol., 285, 1999
8VPE
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BU of 8vpe by Molmil
UIC-10-BIF extension of UIC-1
分子名称: ACETONITRILE, UIC-10-BIF
著者Ganatra, P.
登録日2024-01-16
公開日2024-08-07
最終更新日2024-09-04
実験手法X-RAY DIFFRACTION (0.91 Å)
主引用文献Diverse Proteomimetic Frameworks via Rational Design of pi-Stacking Peptide Tectons.
J.Am.Chem.Soc., 146, 2024
8XI3
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BU of 8xi3 by Molmil
Structure of mouse SCMC-14-3-3gama complex
分子名称: 14-3-3 protein gamma, NACHT, LRR and PYD domains-containing protein 5, ...
著者Chi, P, Han, Z, Jiao, H, Li, J, Wang, X, Hu, H, Deng, D.
登録日2023-12-19
公開日2024-10-02
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structure of mouse SCMC-14-3-3gama complex
To Be Published
8X4O
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BU of 8x4o by Molmil
Crystal structure of the Y135A mutant of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii
分子名称: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, Probable ribosomal RNA small subunit methyltransferase A, ...
著者Saha, S, Kanaujia, S.P.
登録日2023-11-15
公開日2024-08-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
Structure, 32, 2024
8X4I
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Crystal structure of the D117A mutant of DIMT1 in complex with 5'-methylthioadenosine from Pyrococcus horikoshii
分子名称: 5'-DEOXY-5'-METHYLTHIOADENOSINE, Probable ribosomal RNA small subunit methyltransferase A, ZINC ION
著者Saha, S, Dutta, A, Kanaujia, S.P.
登録日2023-11-15
公開日2024-08-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural and functional characterization of archaeal DIMT1 unveils distinct protein dynamics essential for efficient catalysis.
Structure, 32, 2024
1JG6
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BU of 1jg6 by Molmil
T4 phage BGT in complex with UDP
分子名称: DNA BETA-GLUCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE
著者Morera, S, Lariviere, L, Kurzeck, J, Aschke-Sonnenborn, U, Freemont, P.S, Janin, J, Ruger, W.
登録日2001-06-23
公開日2001-08-15
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding.
J.Mol.Biol., 311, 2001

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