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PDB: 46375 件

2VWN
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Aminopyrrolidine Factor Xa inhibitor
分子名称: 5-Chloro-thiophene-2-carboxylic acid ((3S,4S)-1-{[2-fluoro-4-(2-oxo-2H-pyridin-1-yl)-phenylcarbamoyl]-methyl}-4-hydroxy-pyrrolidin-3-yl)-amide, ACTIVATED FACTOR XA HEAVY CHAIN, CALCIUM ION, ...
著者Groebke-Zbinden, K, Banner, D.W, Benz, J.M, Blasco, F, Decoret, G, Himber, J, Kuhn, B, Panday, N, Ricklin, F, Risch, P, Schlatter, D, Stahl, M, Unger, R, Haap, W.
登録日2008-06-26
公開日2009-07-07
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Design of Novel Aminopyrrolidine Factor Xa Inhibitors from a Screening Hit.
Eur.J.Med.Chem., 44, 2009
5Y9G
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BU of 5y9g by Molmil
Crystal structure of Salmonella SafD adhesin
分子名称: Pilin structural protein SafD,Pilus assembly protein
著者Zeng, L.H, Zhang, L, Wang, P.R, Meng, G.
登録日2017-08-25
公開日2017-11-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis of host recognition and biofilm formation by Salmonella Saf pili
Elife, 6, 2017
5YBI
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Structure of the bacterial pathogens ATPase with substrate AMPPNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Probable ATP synthase SpaL/MxiB, ...
著者Mu, Z.X, Gao, X.P, Cui, S.
登録日2017-09-05
公開日2018-06-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.268 Å)
主引用文献Structural Insight Into Conformational Changes Induced by ATP Binding in a Type III Secretion-Associated ATPase FromShigella flexneri.
Front Microbiol, 9, 2018
8DKF
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Antibody DH1030.1 Fab fragment
分子名称: DH1030.1 Heavy chain, DH1030.1 Light chain
著者Gobeil, S, Acharya, P.
登録日2022-07-05
公開日2023-07-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献DH1030.1 glycan reactive Ab
To Be Published
6SRH
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Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2117
分子名称: 1,2-ETHANEDIOL, 4-methyl-3-[4-(1-methylpiperidin-4-yl)phenyl]-5-(3,4,5-trimethoxyphenyl)pyridine, Activin receptor type-1, ...
著者Adamson, R.J, Williams, E.P, Smil, D, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N.
登録日2019-09-05
公開日2019-09-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2117
To Be Published
8J5J
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BU of 8j5j by Molmil
The crystal structure of bat coronavirus RsYN04 RBD bound to the antibody S43
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, nano antibody S43
著者Zhao, R.C, Niu, S, Han, P, Qi, J.X, Gao, G.F, Wang, Q.H.
登録日2023-04-23
公開日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Cross-species recognition of bat coronavirus RsYN04 and cross-reaction of SARS-CoV-2 antibodies against the virus.
Zool.Res., 44, 2023
8DP1
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Cryo-EM structure of HIV-1 Env(BG505.T332N SOSIP) in complex with DH1030.1 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DH1030.1 Fab Heavy chain, ...
著者Gobeil, S, Acharya, P.
登録日2022-07-14
公開日2023-07-19
実験手法ELECTRON MICROSCOPY (3.46 Å)
主引用文献Shared recognition mechanism for HIV-1 envelope-reactive V3 glycan broadly neutralizing B cell lineage maturation in humans and macaques
To Be Published
8DNQ
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BU of 8dnq by Molmil
BRD2-BD1 in complex with cyclic peptide 2.2B
分子名称: Bromodomain-containing protein 2, Cyclic peptide 2.2B, GLYCEROL
著者Patel, K, Franck, C, Mackay, J.P.
登録日2022-07-11
公開日2023-07-19
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Discovery and characterization of cyclic peptides selective for the C-terminal bromodomains of BET family proteins.
Structure, 31, 2023
5YCT
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BU of 5yct by Molmil
Engineered hairpin loop3 mutant monomer in Single-chain Monellin
分子名称: Single chain Monellin
著者Surana, P, Nandwani, N, Udgaonkar, J.B, Gosavi, S, Das, R.
登録日2017-09-08
公開日2018-11-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献A five-residue motif for the design of domain swapping in proteins.
Nat Commun, 10, 2019
3OT1
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Crystal structure of VC2308 protein
分子名称: 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme, CHLORIDE ION, SODIUM ION
著者Niedzialkowska, E, Wawrzak, Z, Chruszcz, M, Porebski, P, Skarina, T, Huang, X, Grimshaw, S, Cymborowski, M, Savchenko, A, Anderson, W.F, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2010-09-10
公開日2010-09-22
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Crystal structure of VC2308 protein
To be Published
6SU7
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BU of 6su7 by Molmil
Complex between a UDP-glucosyltransferase from Polygonum tinctorium capable of glucosylating indoxyl and 3,4-Dichloroaniline
分子名称: 3,4-Dichloroaniline, Glycosyltransferase
著者Fredslund, F, Teze, D, Svensson, B, Adams, P.D, Welner, D.H.
登録日2019-09-13
公開日2020-09-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献O-/N-/S-Specificity in Glycosyltransferase Catalysis: From Mechanistic Understanding to Engineering
Acs Catalysis, 11, 2021
5MOG
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BU of 5mog by Molmil
Oryza sativa phytoene desaturase inhibited by norflurazon
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Brausemann, A, Gemmecker, S, Koschmieder, J, Beyer, P, Einsle, O.
登録日2016-12-14
公開日2017-07-12
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.77 Å)
主引用文献Structure of Phytoene Desaturase Provides Insights into Herbicide Binding and Reaction Mechanisms Involved in Carotene Desaturation.
Structure, 25, 2017
8DLE
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BU of 8dle by Molmil
Crosslinked Crystal Structure of the 8-amino-7-oxonanoate synthase, BioF, and Benzene Sulfonyl Fluoride-crypto Acyl Carrier Protein, BSF-ACP
分子名称: 1,2-ETHANEDIOL, 8-amino-7-oxononanoate synthase, Acyl carrier protein, ...
著者Chen, A, Davis, T.D, Louie, G.V, Bowman, M.E, Noel, J.P, Burkart, M.D.
登録日2022-07-07
公開日2023-07-12
最終更新日2024-07-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Visualizing the Interface of Biotin and Fatty Acid Biosynthesis through SuFEx Probes.
J.Am.Chem.Soc., 146, 2024
2VZ5
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BU of 2vz5 by Molmil
Structure of the PDZ domain of Tax1 (human T-cell leukemia virus type I) binding protein 3
分子名称: CHLORIDE ION, IMIDAZOLE, TAX1-BINDING PROTEIN 3, ...
著者Murray, J.W, Shafqat, N, Yue, W, Pilka, E, Johannsson, C, Salah, E, Cooper, C, Elkins, J.M, Pike, A.C, Roos, A, Filippakopoulos, P, von Delft, F, Wickstroem, M, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Oppermann, U.
登録日2008-07-30
公開日2008-08-12
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.738 Å)
主引用文献The Structure of the Pdz Domain of Tax1BP
To be Published
6P90
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BU of 6p90 by Molmil
Crystal structure of PaDHDPS2-H56Q mutant
分子名称: 4-hydroxy-tetrahydrodipicolinate synthase, CHLORIDE ION, GLYCEROL
著者Impey, R.E, Panjikar, S, Hall, C.J, Bock, L.J, Sutton, J.M, Perugini, M.A, Soares da Costa, T.P.
登録日2019-06-08
公開日2019-08-07
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Identification of two dihydrodipicolinate synthase isoforms from Pseudomonas aeruginosa that differ in allosteric regulation.
Febs J., 287, 2020
8UC1
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BU of 8uc1 by Molmil
Cryo-EM structure of dolphin Prestin in low Cl buffer
分子名称: CHLORIDE ION, Prestin
著者Haller, P, Bavi, N, Perozo, E.
登録日2023-09-25
公開日2023-12-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Folding of prestin's anion-binding site and the mechanism of outer hair cell electromotility.
Elife, 12, 2023
5JD3
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BU of 5jd3 by Molmil
Crystal structure of LAE5, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, LAE5, ...
著者Stogios, P.J, Xu, X, Nocek, B, Cui, H, Yim, V, Martinez-Martinez, M, Alcaide, M, Ferrer, M, Savchenko, A.
登録日2016-04-15
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献To be published
To Be Published
5MUT
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BU of 5mut by Molmil
Crystal structure of potent human Dihydroorotate Dehydrogenase inhibitors based on hydroxylated azole scaffolds
分子名称: 2-methyl-5-oxidanyl-~{N}-[2,3,5,6-tetrakis(fluoranyl)-4-phenyl-phenyl]-1,2,3-triazole-4-carboxamide, ACETATE ION, CHLORIDE ION, ...
著者Goyal, P, Andersson, M, Moritzer, A.C, Sainas, S, Pippione, A.C, Boschi, D, Al-Kadaraghi, S, Lolli, M, Friemann, R.
登録日2017-01-14
公開日2017-03-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Design, synthesis, biological evaluation and X-ray structural studies of potent human dihydroorotate dehydrogenase inhibitors based on hydroxylated azole scaffolds.
Eur J Med Chem, 129, 2017
8V7R
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BU of 8v7r by Molmil
PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z56772132
分子名称: (5R)-5-[2-(4-methoxyphenyl)ethyl]-5-methylimidazolidine-2,4-dione, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
著者Godoy, A.S, Noske, G.D, Fairhead, M, Lithgo, R.M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Marples, P.G, Ni, X, Tomlinson, C.W.E, Wild, C, Mesquita, N.C.M.R, Oliva, G, Fearon, D, Walsh, M.A, von Delft, F.
登録日2023-12-04
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z56772132
To Be Published
3ORQ
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Crystal Structure of N5-Carboxyaminoimidazole synthetase from Staphylococcus aureus complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Brugarolas, P, Duguid, E.M, Zhang, W, Poor, C.B, He, C.
登録日2010-09-07
公開日2011-07-20
最終更新日2012-03-28
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Structural and biochemical characterization of N5-carboxyaminoimidazole ribonucleotide synthetase and N5-carboxyaminoimidazole ribonucleotide mutase from Staphylococcus aureus.
Acta Crystallogr.,Sect.D, 67, 2011
8DOW
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BU of 8dow by Molmil
Cryo-EM structure of HIV-1 Env(CH848 10.17 DS.SOSIP_DT) in complex with DH1030.1 Fab
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DH1030.1 Fab Heavy chain, ...
著者Gobeil, S, Acharya, P.
登録日2022-07-14
公開日2023-07-19
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (3.69 Å)
主引用文献Shared recognition mechanism for HIV-1 envelope-reactive V3 glycan broadly neutralizing B cell lineage maturation in humans and macaques
To Be Published
2VOC
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THIOREDOXIN A ACTIVE SITE MUTANTS FORM MIXED DISULFIDE DIMERS THAT RESEMBLE ENZYME-SUBSTRATE REACTION INTERMEDIATE
分子名称: DI(HYDROXYETHYL)ETHER, THIOREDOXIN
著者Kouwen, T.R.H.M, Andrell, J, Schrijver, R, Dubois, J.Y.F, Maher, M.J, Iwata, S, Carpenter, E.P, van Dijl, J.M.
登録日2008-02-13
公開日2009-03-10
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Thioredoxin A active-site mutants form mixed disulfide dimers that resemble enzyme-substrate reaction intermediates.
J. Mol. Biol., 379, 2008
6SQW
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BU of 6sqw by Molmil
Mouse dCTPase in complex with 5-Me-dCMP
分子名称: 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, dCTP pyrophosphatase 1
著者Scaletti, E.R, Claesson, M, Helleday, H, Jemth, A.S, Stenmark, P.
登録日2019-09-04
公開日2020-01-29
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The First Structure of an Active Mammalian dCTPase and its Complexes With Substrate Analogs and Products.
J.Mol.Biol., 432, 2020
5YNI
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Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAM and m7GpppG
分子名称: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, S-ADENOSYLMETHIONINE, ZINC ION, ...
著者Wei, S.M, Yang, L, Ke, Z.H, Chen, Y, Guo, D.Y, Fan, C.P.
登録日2017-10-24
公開日2018-12-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex
To Be Published
5YNQ
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Crystal structure of MERS-CoV nsp16/nsp10 complex bound to SAH and m7GpppG
分子名称: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, S-ADENOSYL-L-HOMOCYSTEINE, ZINC ION, ...
著者Wei, S.M, Yang, L, Ke, Z.H, Guo, D.Y, Fan, C.P.
登録日2017-10-25
公開日2018-12-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.958 Å)
主引用文献Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex
To Be Published

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