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PDB: 45712 results

6ZJM
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BU of 6zjm by Molmil
Atomic model of Andes virus glycoprotein spike tetramer generated by fitting into a Tula virus reconstruction
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope polyprotein,Envelope polyprotein,Envelope polyprotein,Envelope polyprotein,Envelope polyprotein,Envelope polyprotein,Envelope polyprotein,Envelope polyprotein,Envelope polyprotein, ...
Authors:Stass, R, Huiskonen, J.T, Rey, F, Guardado-Calvo, P.
Deposit date:2020-06-29
Release date:2020-10-14
Last modified:2020-10-28
Method:ELECTRON MICROSCOPY (11.4 Å)
Cite:The Hantavirus Surface Glycoprotein Lattice and Its Fusion Control Mechanism.
Cell, 183, 2020
8BAY
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BU of 8bay by Molmil
Crystal Structure of IDH1 variant R132C S280F in complex with NADPH, Ca2+ and 3-butyl-2-oxoglutarate
Descriptor: (R)-3-butyl-2-oxopentanedioic acid, (S)-3-butyl-2-oxopentanedioic acid, CALCIUM ION, ...
Authors:Rabe, P, Schofield, C.J, Reinbold, R, Brewitz, L.
Deposit date:2022-10-12
Release date:2022-11-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Natural and synthetic 2-oxoglutarate derivatives are substrates for oncogenic variants of human isocitrate dehydrogenase 1 and 2.
J.Biol.Chem., 299, 2023
7UYV
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BU of 7uyv by Molmil
Crystal structure of JAK3 kinase domain in complex with compound 25
Descriptor: 6-{[(2M)-2-(2-chloro-6-fluorophenyl)-5-oxo-5H-pyrrolo[3,4-b]pyridin-4-yl]amino}-N-ethylpyridine-3-carboxamide, CHLORIDE ION, Tyrosine-protein kinase JAK3
Authors:Toms, A.V, Leit, S, Greenwood, J.R, Mondal, S, Carriero, S, Dahlgren, M, Harriman, G.C, Kennedy-Smith, J.J, Kapeller, R, Lawson, J.P, Romero, D.L, Shelley, M, Wester, R.T, Westlin, W, Mc Elwee, J.J, Miao, W, Edmondson, S.D, Massee, C.E.
Deposit date:2022-05-07
Release date:2022-08-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Potent and selective TYK2-JH1 inhibitors highly efficacious in rodent model of psoriasis.
Bioorg.Med.Chem.Lett., 73, 2022
6HIY
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BU of 6hiy by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3
Descriptor: 9S rRNA, MAGNESIUM ION, SPERMIDINE, ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
7UYS
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BU of 7uys by Molmil
Crystal structure of TYK2 kinase domain in complex with compound 16
Descriptor: 2-(2,6-difluorophenyl)-4-(4-methoxyanilino)-5H-pyrrolo[3,4-d]pyrimidin-5-one, Non-receptor tyrosine-protein kinase TYK2
Authors:Toms, A.V, Leit, S, Greenwood, J.R, Mondal, S, Carriero, S, Dahlgren, M, Harriman, G.C, Kennedy-Smith, J.J, Kapeller, R, Lawson, J.P, Romero, D.L, Shelley, M, Wester, R.T, Westlin, W, Mc Elwee, J.J, Miao, W, Edmondson, S.D, Massee, C.E.
Deposit date:2022-05-07
Release date:2022-08-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Potent and selective TYK2-JH1 inhibitors highly efficacious in rodent model of psoriasis.
Bioorg.Med.Chem.Lett., 73, 2022
6X4G
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BU of 6x4g by Molmil
Crystal structure of ICOS in complex with ICOS-L and an anti ICOS-L VNAR domain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ICOS ligand, ...
Authors:Rujas, E, Sicard, T, Julien, J.P.
Deposit date:2020-05-22
Release date:2020-10-14
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural characterization of the ICOS/ICOS-L immune complex reveals high molecular mimicry by therapeutic antibodies.
Nat Commun, 11, 2020
3P9Y
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BU of 3p9y by Molmil
Crystal structure of the Drosophila melanogaster Ssu72-pCTD complex
Descriptor: CG14216, IMIDAZOLE, TETRAETHYLENE GLYCOL, ...
Authors:Werner-Allen, J.W, Zhou, P.
Deposit date:2010-10-18
Release date:2010-12-15
Last modified:2016-08-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:cis-Proline-mediated Ser(P)5 Dephosphorylation by the RNA Polymerase II C-terminal Domain Phosphatase Ssu72.
J.Biol.Chem., 286, 2011
7B3U
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BU of 7b3u by Molmil
OXA-10 beta-lactamase with covalent modification
Descriptor: Beta-lactamase OXA-10, DI(HYDROXYETHYL)ETHER, SODIUM ION, ...
Authors:Lang, P.A, Brem, J, Schofield, C.J.
Deposit date:2020-12-01
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Studies on enmetazobactam clarify mechanisms of widely used beta-lactamase inhibitors.
Proc.Natl.Acad.Sci.USA, 119, 2022
1B97
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BU of 1b97 by Molmil
ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP
Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), RESTRICTION ENDONUCLEASE ECORV
Authors:Thomas, M.P, Halford, S.E, Brady, R.L.
Deposit date:1999-02-19
Release date:1999-02-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group.
Nucleic Acids Res., 27, 1999
7B3S
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BU of 7b3s by Molmil
OXA-10 beta-lactamase with S67Dha modification
Descriptor: Beta-lactamase OXA-10, CARBON DIOXIDE, SODIUM ION, ...
Authors:Lang, P.A, Brem, J, Schofield, C.J.
Deposit date:2020-12-01
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Studies on enmetazobactam clarify mechanisms of widely used beta-lactamase inhibitors.
Proc.Natl.Acad.Sci.USA, 119, 2022
4WVH
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BU of 4wvh by Molmil
Crystal structure of the Type-I signal peptidase from Staphylococcus aureus (SpsB) in complex with a substrate peptide (pep1).
Descriptor: Maltose-binding periplasmic protein,Signal peptidase IB, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, substrate peptide (pep1)
Authors:Young, P.G, Ting, Y.T, Baker, E.N.
Deposit date:2014-11-05
Release date:2015-09-23
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Peptide binding to a bacterial signal peptidase visualized by peptide tethering and carrier-driven crystallization.
IUCrJ, 3, 2016
5CTI
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BU of 5cti by Molmil
Crystal structure of the type IX collagen NC2 hetero-trimerization domain with a guest fragment a2a1a1 of type I collagen (native form)
Descriptor: Collagen alpha-1(I) chain,Collagen alpha-1(IX) chain, Collagen alpha-1(I) chain,Collagen alpha-3(IX) chain, Collagen alpha-2(I) chain,Collagen alpha-2(IX) chain, ...
Authors:Boudko, S.P, Bachinger, H.P.
Deposit date:2015-07-24
Release date:2016-08-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8994 Å)
Cite:Structural insight for chain selection and stagger control in collagen.
Sci Rep, 6, 2016
5GVY
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BU of 5gvy by Molmil
Crystal structure of SALT protein from Oryza sativa
Descriptor: Salt stress-induced protein, alpha-D-mannopyranose
Authors:Sharma, P, Sagar, A, Kaur, N, Sharma, I, Kirat, K, Ashish, F.N.U, Pati, P.K.
Deposit date:2016-09-07
Release date:2017-09-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.662 Å)
Cite:Structural insights into rice SalTol QTL located SALT protein.
Sci Rep, 10, 2020
1FW5
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BU of 1fw5 by Molmil
SOLUTION STRUCTURE OF MEMBRANE BINDING PEPTIDE OF SEMLIKI FOREST VIRUS MRNA CAPPING ENZYME NSP1
Descriptor: NONSTRUCTURAL PROTEIN NSP1
Authors:Lampio, A, Kilpelinen, I, Pesonen, S, Karhi, K, Auvinen, P, Somerharju, P, Kriinen, L.
Deposit date:2000-09-21
Release date:2001-09-21
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Membrane binding mechanism of an RNA virus-capping enzyme.
J.Biol.Chem., 275, 2001
7B3R
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BU of 7b3r by Molmil
OXA-10 beta-lactamase with S64Dha modification and lysinoalanine crosslink
Descriptor: Beta-lactamase OXA-10, SODIUM ION
Authors:Lang, P.A, Brem, J, Schofield, C.J.
Deposit date:2020-12-01
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Studies on enmetazobactam clarify mechanisms of widely used beta-lactamase inhibitors.
Proc.Natl.Acad.Sci.USA, 119, 2022
8BEG
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BU of 8beg by Molmil
Structure of Ig-like domains from PrgB
Descriptor: MAGNESIUM ION, PrgB
Authors:Jarva, M, Schmitt, A, Berntsson, R.P.-A.
Deposit date:2022-10-21
Release date:2022-11-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural foundation for the role of enterococcal PrgB in conjugation, biofilm formation, and virulence.
Elife, 12, 2023
5FBU
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BU of 5fbu by Molmil
Crystal structure of rifampin phosphotransferase RPH-Lm from Listeria monocytogenes in complex with rifampin-phosphate
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Phosphoenolpyruvate synthase, ...
Authors:Stogios, P.J, Wawrzak, Z, Skarina, T, Yim, V, Savchenko, A, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-12-14
Release date:2015-12-30
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Rifampin phosphotransferase is an unusual antibiotic resistance kinase.
Nat Commun, 7, 2016
7B85
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BU of 7b85 by Molmil
Crystal Structure of EGFR-WT in Complex with TAK-788
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Epidermal growth factor receptor, propan-2-yl 2-[[4-[2-(dimethylamino)ethyl-methyl-amino]-2-methoxy-5-(propanoylamino)phenyl]amino]-4-(1-methylindol-3-yl)pyrimidine-5-carboxylate
Authors:Niggenaber, J, Mueller, M.P, Rauh, D.
Deposit date:2020-12-12
Release date:2022-02-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insight into Targeting Exon20 Insertion Mutations of the Epidermal Growth Factor Receptor with Wild Type-Sparing Inhibitors.
J.Med.Chem., 65, 2022
2XI4
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BU of 2xi4 by Molmil
Torpedo californica Acetylcholinesterase in Complex with Aflatoxin B1 (Orthorhombic Space Group)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETYLCHOLINESTERASE, AFLATOXIN B1, ...
Authors:Sanson, B, Colletier, J.P, Xu, Y, Lang, P.T, Jiang, H, Silman, I, Sussman, J.L, Weik, M.
Deposit date:2010-06-28
Release date:2011-03-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Backdoor Opening Mechanism in Acetylcholinesterase Based on X-Ray Crystallography and Molecular Dynamics Simulations.
Protein Sci., 20, 2011
5CR7
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BU of 5cr7 by Molmil
Human cytosolic 5'-nucleotidase II in complex with N-(9H-Purin-6-yl)-3-(3-pyrrol-1-ylphenyl)benzamide
Descriptor: ACETATE ION, Cytosolic purine 5'-nucleotidase, GLYCEROL, ...
Authors:Aghajari, N, Preeti, P.
Deposit date:2015-07-22
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Identification of Noncompetitive Inhibitors of Cytosolic 5'-Nucleotidase II Using a Fragment-Based Approach.
J.Med.Chem., 58, 2015
1G2C
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BU of 1g2c by Molmil
HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION PROTEIN CORE
Descriptor: FUSION PROTEIN (F)
Authors:Zhao, X, Singh, M, Malashkevich, V.N, Kim, P.S.
Deposit date:2000-10-18
Release date:2001-01-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of the human respiratory syncytial virus fusion protein core.
Proc.Natl.Acad.Sci.USA, 97, 2000
2KH1
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BU of 2kh1 by Molmil
2-Hydroxy-7-nitrofluorene covalently linked into a 13mer DNA duplex - solution structure of the face-up orientation
Descriptor: 5'-D(*CP*GP*AP*CP*GP*TP*(3DR)P*TP*GP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*CP*AP*(3DR)P*AP*CP*GP*TP*CP*G)-3', 7-nitro-9H-fluoren-2-ol
Authors:Dallmann, A, Pfaffe, M, Muegge, C, Mahrwald, R, Kovalenko, S.A, Ernsting, N.P.
Deposit date:2009-03-23
Release date:2009-12-01
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Local THz Time Domain Spectroscopy of Duplex DNA via Fluorescence of an Embedded Probe.
J.Phys.Chem.B, 113, 2009
5F8N
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BU of 5f8n by Molmil
Enterovirus 71 Polymerase Elongation Complex (C3S6 Form)
Descriptor: GLYCEROL, Genome polyprotein, PYROPHOSPHATE 2-, ...
Authors:Shu, B, Gong, P.
Deposit date:2015-12-09
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.484 Å)
Cite:Structural basis of viral RNA-dependent RNA polymerase catalysis and translocation
Proc.Natl.Acad.Sci.USA, 113, 2016
5F8Z
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BU of 5f8z by Molmil
The crystal structure of human Plasma Kallikrein in complex with its peptide inhibitor pkalin-1
Descriptor: CYS-PRO-ALA-ARG-PHE-M70-ALA-LEU-PHE-CYS, Plasma kallikrein LIGHT CHAIN, SULFATE ION, ...
Authors:Xu, M, Jiang, L, Xu, P, Luo, Z, Andreasen, P, Huang, M.
Deposit date:2015-12-09
Release date:2016-12-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The crystal structure of human Plasma Kallikrein in complex with its peptide inhibitor pkalin-1
To Be Published
4JPW
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BU of 4jpw by Molmil
Crystal structure of broadly and potently neutralizing antibody 12a21 in complex with hiv-1 strain 93th057 gp120 mutant
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEAVY CHAIN OF ANTIBODY 12A21, ...
Authors:Acharya, P, Luongo, T, Zhou, T, Kwong, P.D.
Deposit date:2013-03-19
Release date:2013-04-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Somatic mutations of the immunoglobulin framework are generally required for broad and potent HIV-1 neutralization.
Cell(Cambridge,Mass.), 153, 2013

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