Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 186 results

4F9T
DownloadVisualize
BU of 4f9t by Molmil
Ribosomal protein L1 from Thermus thermophilus with substitution Thr217Ala
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 50S ribosomal protein L1, ...
Authors:Kljashtorny, V.G, Volchkov, S.A, Nikonova, E.Y, Kostareva, O.S, Tishchenko, S.V, Nevskaya, N.A, Nikonov, S.V.
Deposit date:2012-05-21
Release date:2012-08-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:[Crystal structures of mutant ribosomal proteins L1].
MOL.BIOL.(MOSCOW), 41, 2007
3CW2
DownloadVisualize
BU of 3cw2 by Molmil
Crystal structure of the intact archaeal translation initiation factor 2 from Sulfolobus solfataricus .
Descriptor: Translation initiation factor 2 subunit alpha, Translation initiation factor 2 subunit beta, Translation initiation factor 2 subunit gamma
Authors:Stolboushkina, E.A, Nikonov, S.V, Nikulin, A.D, Blaesi, U, Manstein, D.J, Fedorov, R.V, Garber, M.B, Nikonov, O.S.
Deposit date:2008-04-21
Release date:2009-01-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the intact archaeal translation initiation factor 2 demonstrates very high conformational flexibility in the alpha- and beta-subunits.
J.Mol.Biol., 382, 2008
2HW8
DownloadVisualize
BU of 2hw8 by Molmil
Structure of ribosomal protein L1-mRNA complex at 2.1 resolution.
Descriptor: 1,4-BUTANEDIOL, 36-MER, 50S ribosomal protein L1, ...
Authors:Tishchenko, S, Nikonova, E, Nikulin, A, Nevskaya, N, Volchkov, S, Piendl, W, Garber, M, Nikonov, S.
Deposit date:2006-08-01
Release date:2006-12-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the ribosomal protein L1-mRNA complex at 2.1 A resolution: common features of crystal packing of L1-RNA complexes.
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
3I1F
DownloadVisualize
BU of 3i1f by Molmil
Gamma-subunit of the translation initiation factor 2 from S. solfataricus in complex with Gpp(CH2)p
Descriptor: PHOSPHATE ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Translation initiation factor 2 subunit gamma
Authors:Stolboushkina, E.A, Nikonov, S.V, Nikulin, A.D, Blaesi, U, Garber, M.B, Nikonov, O.S.
Deposit date:2009-06-26
Release date:2010-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:5-prime-triphosphate end of mRNA recognizes the second GTP-binding site on the gamma-subunit of the archaeal translation initiation factor 2
To be Published
5AIY
DownloadVisualize
BU of 5aiy by Molmil
R6 HUMAN INSULIN HEXAMER (SYMMETRIC), NMR, 'RED' SUBSTATE, AVERAGE STRUCTURE
Descriptor: PHENOL, PROTEIN (INSULIN)
Authors:O'Donoghue, S.I, Chang, X, Abseher, R, Nilges, M, Led, J.J.
Deposit date:1998-12-29
Release date:2000-02-28
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Unraveling the symmetry ambiguity in a hexamer: calculation of the R6 human insulin structure.
J.Biomol.NMR, 16, 2000
3PEN
DownloadVisualize
BU of 3pen by Molmil
Structure of archaeal initiation factor aIF2gamma subunit delta 37-47 from Sulfolobus solfataricus in the GDP-bound form.
Descriptor: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Arkhipova, V.I, Lazopulo, A.M, Lazopulo, S.M, Garber, M.B, Nikonov, O.S, Nikonov, S.V, Gabdoulkhakov, A.G.
Deposit date:2010-10-27
Release date:2011-05-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.3005 Å)
Cite:Structure of archaeal initiation factor aIF2gamma subunit from Sulfolobus solfataricus in the GDP-bound form.
TO BE PUBLISHED
2OAW
DownloadVisualize
BU of 2oaw by Molmil
Structure of SHH variant of "Bergerac" chimera of spectrin SH3
Descriptor: CHLORIDE ION, Spectrin alpha chain, brain
Authors:Gabdoulkhakov, A.G, Gushchina, L.V, Nikulin, A.D, Nikonov, S.V, Viguera, A.R, Serrano, L, Filimonov, V.V.
Deposit date:2006-12-18
Release date:2008-04-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and thermodynamic studies of Bergerac-SH3 chimeras.
Biophys.Chem., 139, 2009
3QOY
DownloadVisualize
BU of 3qoy by Molmil
Crystal structure of ribosomal protein L1 from Aquifex aeolicus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 50S ribosomal protein L1, ACETIC ACID, ...
Authors:Gabdulkhakov, A.G, Tishchenko, S.V, Nikonova, E.U, Shkliaeva, A.A, Garber, M.B, Nikonov, S.V, Nevskaya, N.A.
Deposit date:2011-02-11
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Ribosomal Protein L1 from the Bacterium Aquifex Aeolicus
Crystallography Reports, 56, 2011
3THK
DownloadVisualize
BU of 3thk by Molmil
Structure of SH3 chimera with a type II ligand linked to the chain C-terminal
Descriptor: BETA-MERCAPTOETHANOL, Proline-rich peptide, SULFATE ION, ...
Authors:Gabdulkhakov, A.G, Gushchina, L.V, Nikulin, A.D, Nikonov, S.V, Filimonov, V.V.
Deposit date:2011-08-19
Release date:2011-11-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-Resolution Crystal Structure of Spectrin SH3 Domain Fused with a Proline-Rich Peptide.
J.Biomol.Struct.Dyn., 29, 2011
4QFM
DownloadVisualize
BU of 4qfm by Molmil
The structure of aIF2gamma subunit D152A from archaeon Sulfolobus solfataricus complexed with GDPCP
Descriptor: FORMIC ACID, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Kravchenko, O.V, Nikonov, O.S, Arhipova, V.I, Stolboushkina, E.A, Gabdulkhakov, A.G, Nikulin, A.D, Garber, M.B, Nikonov, S.V.
Deposit date:2014-05-21
Release date:2015-06-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of aIF2gamma subunit D152A from archaeon Sulfolobus solfataricus complexed with GDPCP
To be Published
4NBS
DownloadVisualize
BU of 4nbs by Molmil
The structure of aIF2gamma subunit H20F from archaeon Sulfolobus solfataricus complexed with GDPCP
Descriptor: FORMIC ACID, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
Authors:Kravchenko, O.V, Nikonov, O.S, Arhipova, V.I, Stolboushkina, E.A, Gabdulkhakov, A.G, Nikulin, A.D, Garber, M.B, Nikonov, S.V.
Deposit date:2013-10-23
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.305 Å)
Cite:The structure of aIF2gamma subunit H20F from archaeon Sulfolobus solfataricus complexed with GDPCP
To be Published
1MJI
DownloadVisualize
BU of 1mji by Molmil
DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX
Descriptor: 50S ribosomal protein L5, 5S rRNA fragment, MAGNESIUM ION, ...
Authors:Perederina, A, Nevskaya, N, Nikonov, O, Nikulin, A, Dumas, P, Yao, M, Tanaka, I, Garber, M, Gongadze, G, Nikonov, S.
Deposit date:2002-08-28
Release date:2003-01-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex
RNA, 8, 2002
4LQ4
DownloadVisualize
BU of 4lq4 by Molmil
crystal structure of mutant ribosomal protein L1 from Methanococcus jannaschii with deletion of 8 residues from C-terminus
Descriptor: 50S ribosomal protein L1, CHLORIDE ION, ISOPROPYL ALCOHOL, ...
Authors:Gabdulkhakov, A.G, Tishchenko, S.V, Shkliaeva, A.A, Garber, M.B, Nikonov, S.V, Sarskikh, A.V.
Deposit date:2013-07-17
Release date:2014-07-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a mutant of archaeal ribosomal protein L1 from Methanococcus jannaschii
Crystallography Reports, 59, 2014
4QHY
DownloadVisualize
BU of 4qhy by Molmil
The structure of aIF2gamma subunit H20F/D152A from archaeon Sulfolobus solfataricus complexed with GDPCP
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Translation initiation factor 2 subunit gamma
Authors:Kravchenko, O.V, Nikonov, O.S, Arhipova, V.I, Stolboushkina, E.A, Gabdulkhakov, A.G, Nikulin, A.D, Garber, M.B, Nikonov, S.V.
Deposit date:2014-05-30
Release date:2015-06-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Binding mRNA on the archaeal translation initiation factor 2 gamma-subunit
To be Published
5AZ3
DownloadVisualize
BU of 5az3 by Molmil
Crystal structure of heme binding protein HmuT
Descriptor: ABC-type transporter, periplasmic component, PROTOPORPHYRIN IX CONTAINING FE
Authors:Muraki, N, Aono, S.
Deposit date:2015-09-18
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.423 Å)
Cite:Structural Basis for Heme Recognition by HmuT Responsible for Heme Transport to the Heme Transporter in Corynebacterium glutamicum
Chem Lett., 2015
1ZXJ
DownloadVisualize
BU of 1zxj by Molmil
Crystal structure of the hypthetical Mycoplasma protein, MPN555
Descriptor: Hypothetical protein MG377 homolog
Authors:Schulze-Gahmen, U, Aono, S, Shengfeng, C, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC)
Deposit date:2005-06-08
Release date:2005-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function.
Acta Crystallogr.,Sect.D, 61, 2005
5B51
DownloadVisualize
BU of 5b51 by Molmil
Crystal structure of heme binding protein HmuT R242A mutant
Descriptor: ABC-type transporter, periplasmic component, PROTOPORPHYRIN IX CONTAINING FE
Authors:Muraki, N, Aono, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural Characterization of Heme Environmental Mutants of CgHmuT that Shuttles Heme Molecules to Heme Transporters
Int J Mol Sci, 17, 2016
7VLE
DownloadVisualize
BU of 7vle by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 55% oxygen saturation
Descriptor: Extracellular A1 globin, Extracellular A2 globin, Extracellular B1 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
1AN7
DownloadVisualize
BU of 1an7 by Molmil
RIBOSOMAL PROTEIN S8 FROM THERMUS THERMOPHILUS
Descriptor: RIBOSOMAL PROTEIN S8
Authors:Nevskaya, N, Nikonov, S, Al-Karadaghi, S.
Deposit date:1997-06-27
Release date:1998-07-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of ribosomal protein S8 from Thermus thermophilus reveals a high degree of structural conservation of a specific RNA binding site.
J.Mol.Biol., 279, 1998
7VLD
DownloadVisualize
BU of 7vld by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 69% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLF
DownloadVisualize
BU of 7vlf by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 26% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLC
DownloadVisualize
BU of 7vlc by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 78% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
5B4Z
DownloadVisualize
BU of 5b4z by Molmil
Crystal structure of heme binding protein HmuT H141A mutant
Descriptor: ABC-type transporter, periplasmic component, PROTOPORPHYRIN IX CONTAINING FE
Authors:Muraki, N, Aono, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural Characterization of Heme Environmental Mutants of CgHmuT that Shuttles Heme Molecules to Heme Transporters
Int J Mol Sci, 17, 2016
1CJS
DownloadVisualize
BU of 1cjs by Molmil
CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN L1 FROM METHANOCOCCUS JANNASCHII
Descriptor: 50S RIBOSOMAL PROTEIN L1P
Authors:Nevskaya, N, Tishchenko, S, Fedorov, R, Al-Karadaghi, S, Liljas, A, Kraft, A, Piendl, W, Garber, M, Nikonov, S.
Deposit date:1999-04-19
Release date:2000-05-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Archaeal ribosomal protein L1: the structure provides new insights into RNA binding of the L1 protein family.
Structure Fold.Des., 8, 2000
5B50
DownloadVisualize
BU of 5b50 by Molmil
Crystal structure of heme binding protein HmuT Y240A
Descriptor: ABC-type transporter, periplasmic component, PROTOPORPHYRIN IX CONTAINING FE
Authors:Muraki, N, Aono, S.
Deposit date:2016-04-20
Release date:2017-03-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Characterization of Heme Environmental Mutants of CgHmuT that Shuttles Heme Molecules to Heme Transporters
Int J Mol Sci, 17, 2016

222926

数据于2024-07-24公开中

PDB statisticsPDBj update infoContact PDBjnumon