7F1I
| Designed enzyme RA61 M48K/I72D mutant: form II | 分子名称: | Engineered Retroaldolase | 著者 | Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F. | 登録日 | 2021-06-09 | 公開日 | 2021-11-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions. Chembiochem, 23, 2022
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7F1H
| Designed enzyme RA61 M48K/I72D mutant: form I | 分子名称: | Engineered Retroaldolase, FORMIC ACID, GLYCEROL | 著者 | Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F. | 登録日 | 2021-06-09 | 公開日 | 2021-11-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.14 Å) | 主引用文献 | Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions. Chembiochem, 23, 2022
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7F1J
| Designed enzyme RA61 M48K/I72D mutant: form III | 分子名称: | Engineered Retroaldolase | 著者 | Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F. | 登録日 | 2021-06-09 | 公開日 | 2021-11-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions. Chembiochem, 23, 2022
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7F1K
| Designed enzyme RA61 M48K/I72D mutant: form IV | 分子名称: | Engineered Retroaldolase | 著者 | Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F. | 登録日 | 2021-06-09 | 公開日 | 2021-11-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.05 Å) | 主引用文献 | Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions. Chembiochem, 23, 2022
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7F1L
| Designed enzyme RA61 M48K/I72D mutant: form V | 分子名称: | CHLORIDE ION, Engineered Retroaldolase, IMIDAZOLE | 著者 | Fujioka, T, Oka, M, Numoto, N, Ito, N, Oda, M, Tanaka, F. | 登録日 | 2021-06-09 | 公開日 | 2021-11-24 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Varying the Directionality of Protein Catalysts for Aldol and Retro-Aldol Reactions. Chembiochem, 23, 2022
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7YRO
| Crystal structure of mango fucosyltransferase 13 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, Fucosyltransferase, ... | 著者 | Okada, T, Teramoto, T, Ihara, H, Ikeda, Y, Kakuta, Y. | 登録日 | 2022-08-10 | 公開日 | 2023-08-16 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.42 Å) | 主引用文献 | Crystal structure of mango alpha 1,3/ alpha 1,4-fucosyltransferase elucidates unique elements that regulate Lewis A-dominant oligosaccharide assembly. Glycobiology, 34, 2024
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1MQA
| Crystal structure of high affinity alphaL I domain in the absence of ligand or metal | 分子名称: | Integrin alpha-L | 著者 | Shimaoka, T, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, Zhang, R, Takagi, J, Wang, J.-H, Springer, T.A. | 登録日 | 2002-09-15 | 公開日 | 2003-01-14 | 最終更新日 | 2021-10-27 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation Cell(Cambridge,Mass.), 112, 2003
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5B1O
| DHp domain structure of EnvZ P248A mutant | 分子名称: | Osmolarity sensor protein EnvZ | 著者 | Okajima, T, Eguchi, Y, Tochio, N, Inukai, Y, Shimizu, R, Ueda, S, Shinya, S, Kigawa, T, Fukamizo, T, Igarashi, M, Utsumi, R. | 登録日 | 2015-12-09 | 公開日 | 2016-12-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases J. Antibiot., 70, 2017
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1F88
| CRYSTAL STRUCTURE OF BOVINE RHODOPSIN | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RETINAL, ... | 著者 | Okada, T, Palczewski, K, Stenkamp, R.E, Miyano, M. | 登録日 | 2000-06-29 | 公開日 | 2000-08-04 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structure of rhodopsin: A G protein-coupled receptor. Science, 289, 2000
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5B1N
| DHp domain structure of EnvZ from Escherichia coli | 分子名称: | Osmolarity sensor protein EnvZ | 著者 | Okajima, T, Eguchi, Y, Tochio, N, Inukai, Y, Shimizu, R, Ueda, S, Shinya, S, Kigawa, T, Fukamizo, T, Igarashi, M, Utsumi, R. | 登録日 | 2015-12-09 | 公開日 | 2016-12-14 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.33 Å) | 主引用文献 | Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases J. Antibiot., 70, 2017
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5Z98
| Crystal Structure of the Primate APOBEC3H Dimer mediated by RNA Duplex | 分子名称: | Apolipoprotein B mRNA editing enzyme catalytic polypeptide-like protein 3H, RNA (5'-R(*AP*UP*AP*CP*CP*CP*GP*GP*CP*A)-3'), RNA (5'-R(P*CP*UP*GP*CP*CP*GP*GP*GP*UP*A)-3'), ... | 著者 | Matsuoka, T, Nagae, T, Ode, H, Watanabe, N, Iwatani, Y. | 登録日 | 2018-02-02 | 公開日 | 2018-08-15 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Structural basis of chimpanzee APOBEC3H dimerization stabilized by double-stranded RNA. Nucleic Acids Res., 46, 2018
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2D1V
| Crystal structure of DNA-binding domain of Bacillus subtilis YycF | 分子名称: | Transcriptional regulatory protein yycF | 著者 | Okajima, T, Okada, A, Watanabe, T, Yamamoto, K, Tanizawa, K, Utsumi, R. | 登録日 | 2005-09-01 | 公開日 | 2006-09-12 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif Febs Lett., 582, 2008
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7WEW
| Structure of adenylation domain of epsilon-poly-L-lysine synthase | 分子名称: | ADENOSINE-5'-[LYSYL-PHOSPHATE], Epsilon-poly-L-lysine synthase, GLYCEROL, ... | 著者 | Okamoto, T, Yamanaka, K, Hamano, Y, Nagano, S, Hino, T. | 登録日 | 2021-12-24 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of the adenylation domain from an epsilon-poly-l-lysine synthetase provides molecular mechanism for substrate specificity Biochem.Biophys.Res.Commun., 596, 2022
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1WMN
| Crystal structure of topaquinone-containing amine oxidase activated by cobalt ion | 分子名称: | COBALT (II) ION, Phenylethylamine oxidase | 著者 | Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K. | 登録日 | 2004-07-13 | 公開日 | 2005-08-02 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase Biochemistry, 44, 2005
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1WMO
| Crystal structure of topaquinone-containing amine oxidase activated by nickel ion | 分子名称: | NICKEL (II) ION, Phenylethylamine oxidase | 著者 | Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K. | 登録日 | 2004-07-13 | 公開日 | 2005-08-02 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase Biochemistry, 44, 2005
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1WMP
| Crystal structure of amine oxidase complexed with cobalt ion | 分子名称: | COBALT (II) ION, Phenylethylamine oxidase | 著者 | Okajima, T, Kishishita, S, Chiu, Y.C, Murakawa, T, Kim, M, Yamaguchi, H, Hirota, S, Kuroda, S, Tanizawa, K. | 登録日 | 2004-07-13 | 公開日 | 2005-08-02 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Reinvestigation of metal ion specificity for quinone cofactor biogenesis in bacterial copper amine oxidase Biochemistry, 44, 2005
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6JI6
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1L9H
| Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ... | 著者 | Okada, T, Fujiyoshi, Y, Silow, M, Navarro, J, Landau, E.M, Shichida, Y. | 登録日 | 2002-03-23 | 公開日 | 2002-05-15 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography. Proc.Natl.Acad.Sci.USA, 99, 2002
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2ZYF
| Crystal structure of homocitrate synthase from Thermus thermophilus complexed with magnesuim ion and alpha-ketoglutarate | 分子名称: | 2-OXOGLUTARIC ACID, Homocitrate synthase, MAGNESIUM ION | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2009-01-20 | 公開日 | 2009-12-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus J.Biol.Chem., 2009
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3A9I
| Crystal structure of homocitrate synthase from Thermus thermophilus complexed with Lys | 分子名称: | COBALT (II) ION, Homocitrate synthase, LYSINE | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2009-10-28 | 公開日 | 2009-12-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus J.Biol.Chem., 285, 2010
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2ZTK
| Crystal structure of homocitrate synthase from Thermus thermophilus complexed with homocitrate | 分子名称: | 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION, Homocitrate synthase | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2008-10-06 | 公開日 | 2009-10-13 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus J.Biol.Chem., 285, 2010
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2ZJU
| Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein (Ls-AChBP) Complexed with Imidacloprid | 分子名称: | (2E)-1-[(6-chloropyridin-3-yl)methyl]-N-nitroimidazolidin-2-imine, Acetylcholine-binding protein | 著者 | Okajima, T, Ihara, M, Yamashita, A, Oda, T, Morimoto, T, Matsuda, K. | 登録日 | 2008-03-10 | 公開日 | 2008-04-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.58 Å) | 主引用文献 | Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin Invert.Neurosci., 8, 2008
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2ZJV
| Crystal Structure of Lymnaea stagnalis Acetylcholine Binding Protein (Ls-AChBP) Complexed with Clothianidin | 分子名称: | 1-[(2-chloro-1,3-thiazol-5-yl)methyl]-3-methyl-2-nitroguanidine, Acetylcholine-binding protein | 著者 | Okajima, T, Ihara, M, Yamashita, A, Oda, T, Morimoto, T, Matsuda, K. | 登録日 | 2008-03-10 | 公開日 | 2008-04-08 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin Invert.Neurosci., 8, 2008
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2ZTJ
| Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate | 分子名称: | 2-OXOGLUTARIC ACID, COPPER (II) ION, Homocitrate synthase | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2008-10-06 | 公開日 | 2009-10-13 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus J.Biol.Chem., 285, 2010
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1U19
| Crystal Structure of Bovine Rhodopsin at 2.2 Angstroms Resolution | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ... | 著者 | Okada, T, Sugihara, M, Bondar, A.N, Elstner, M, Entel, P, Buss, V. | 登録日 | 2004-07-15 | 公開日 | 2004-10-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure J.Mol.Biol., 342, 2004
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