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PDB: 191 件
1DIO
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BU of 1dio by Molmil
DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
分子名称: COBALAMIN, POTASSIUM ION, PROTEIN (DIOL DEHYDRATASE), ...
著者Shibata, N, Masuda, J, Tobimatsu, T, Toraya, T, Suto, K, Morimoto, Y, Yasuoka, N.
登録日1999-01-27
公開日2000-01-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.
Structure Fold.Des., 7, 1999
1EEX
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BU of 1eex by Molmil
CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSIELLA OXYTOCA
分子名称: CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
著者Shibata, N, Masuda, J, Toraya, T, Morimoto, Y, Yasuoka, N.
登録日2000-02-04
公開日2001-02-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGV
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BU of 1egv by Molmil
CRYSTAL STRUCTURE OF THE DIOL DEHYDRATASE-ADENINYLPENTYLCOBALAMIN COMPLEX FROM KLEBSELLA OXYTOCA UNDER THE ILLUMINATED CONDITION.
分子名称: CO-(ADENIN-9-YL-PENTYL)-COBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
著者Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N.
登録日2000-02-17
公開日2001-02-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
1EGM
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BU of 1egm by Molmil
CRYSTAL STRUCTURE OF DIOL DEHYDRATASE-CYANOCOBALAMIN COMPLEX AT 100K.
分子名称: CYANOCOBALAMIN, POTASSIUM ION, PROPANEDIOL DEHYDRATASE, ...
著者Masuda, J, Shibata, N, Toraya, T, Morimoto, Y, Yasuoka, N.
登録日2000-02-15
公開日2000-09-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献How a protein generates a catalytic radical from coenzyme B(12): X-ray structure of a diol-dehydratase-adeninylpentylcobalamin complex.
Structure Fold.Des., 8, 2000
5XXX
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BU of 5xxx by Molmil
GMPCPP-microtubule complexed with nucleotide-free KIF5C
分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, ...
著者Morikawa, M, Shigematsu, H, Nitta, R, Hirokawa, N.
登録日2017-07-05
公開日2018-10-10
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (6.43 Å)
主引用文献Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport
J. Cell Biol., 217, 2018
4LGW
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BU of 4lgw by Molmil
Crystal structure of Escherichia coli SdiA in the space group P6522
分子名称: GLYCEROL, Regulatory protein SdiA
著者Kim, T, Duong, T, Wu, C.A, Choi, J, Lan, N, Kang, S.W, Lokanath, N.K, Shin, D, Hwang, H.Y, Kim, K.K.
登録日2013-06-28
公開日2014-03-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor
Acta Crystallogr.,Sect.D, 70, 2014
5XXV
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BU of 5xxv by Molmil
GDP-microtubule complexed with KIF5C in AMPPNP state
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Morikawa, M, Shigematsu, H, Nitta, R, Hirokawa, N.
登録日2017-07-05
公開日2018-10-10
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (6.46 Å)
主引用文献Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport
J. Cell Biol., 217, 2018
4LFU
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BU of 4lfu by Molmil
Crystal structure of Escherichia coli SdiA in the space group C2
分子名称: CHLORIDE ION, Regulatory protein SdiA, TETRAETHYLENE GLYCOL
著者Kim, T, Duong, T, Wu, C.A, Choi, J, Lan, N, Kang, S.W, Lokanath, N.K, Shin, D, Hwang, H.Y, Kim, K.K.
登録日2013-06-27
公開日2014-03-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor
Acta Crystallogr.,Sect.D, 70, 2014
4JP3
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BU of 4jp3 by Molmil
Crystal Structure of TT0495 protein from Thermus thermophilus HB8
分子名称: 2-deoxy-D-gluconate 3-dehydrogenase, CITRIC ACID
著者Pampa, K.J, Lokanath, N.K, Kunishima, N, Ravishnkar Rai, V.
登録日2013-03-19
公開日2014-03-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The first crystal structure of NAD-dependent 3-dehydro-2-deoxy-D-gluconate dehydrogenase from Thermus thermophilus HB8
Acta Crystallogr.,Sect.D, 70, 2014
1FLM
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BU of 1flm by Molmil
DIMER OF FMN-BINDING PROTEIN FROM DESULFOVIBRIO VULGARIS (MIYAZAKI F)
分子名称: FLAVIN MONONUCLEOTIDE, PROTEIN (FMN-BINDING PROTEIN)
著者Suto, K, Kawagoe, K, Shibata, N, Morimoto, K, Higuchi, Y, Kitamura, M, Nakaya, T, Yasuoka, N.
登録日1999-03-10
公開日2000-03-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献How do the x-ray structure and the NMR structure of FMN-binding protein differ?
Acta Crystallogr.,Sect.D, 56, 2000
1EQQ
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BU of 1eqq by Molmil
SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
分子名称: 5'-R(*(5MU)P*(5MU)P*(5MU))-3', SINGLE STRANDED DNA BINDING PROTEIN
著者Matsumoto, T, Morimoto, Y, Shibata, N, Yasuoka, N, Shimamoto, N.
登録日2000-04-06
公開日2003-09-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Roles of functional loops and the C-terminal segment of a single-stranded DNA binding protein elucidated by X-Ray structure analysis
J.Biochem.(Tokyo), 127, 2000
1H2A
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BU of 1h2a by Molmil
SINGLE CRYSTALS OF HYDROGENASE FROM DESULFOVIBRIO VULGARIS
分子名称: FE3-S4 CLUSTER, HYDROGENASE, IRON/SULFUR CLUSTER, ...
著者Higuchi, Y, Yasuoka, N.
登録日1997-10-17
公開日1999-02-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis.
Structure, 5, 1997
1WYT
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BU of 1wyt by Molmil
Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in apo form
分子名称: glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
著者Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-17
公開日2005-04-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
7C7G
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BU of 7c7g by Molmil
Crystal structures of AKR1C3 ternary complex with NADP+ and the chromene derivative 2j
分子名称: 2-azanylidene-N-(4-methylphenyl)-8-oxidanyl-chromene-3-carboxamide, Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Irie, K, Toyooka, N, Endo, S.
登録日2020-05-25
公開日2020-09-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Development of Novel AKR1C3 Inhibitors as New Potential Treatment for Castration-Resistant Prostate Cancer.
J.Med.Chem., 63, 2020
7VJZ
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BU of 7vjz by Molmil
Crystal Structure of SARS-CoV-2 Mpro at 1.90 A resolution-7
分子名称: 3C-like proteinase
著者DeMirci, H, Tokay, N.
登録日2021-09-29
公開日2022-01-26
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Case Study of High-Throughput Drug Screening and Remote Data Collection for SARS-CoV-2 Main Protease by Using Serial Femtosecond X-ray Crystallography
Crystals, 11, 2021
1WYV
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BU of 1wyv by Molmil
Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in inhibitor-bound form
分子名称: (AMINOOXY)ACETIC ACID, PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, ...
著者Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-17
公開日2005-04-05
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
2RVO
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BU of 2rvo by Molmil
Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish
分子名称: RNA (34-MER)
著者Otsu, M, Norose, N, Arai, N, Terao, R, Kajikawa, M, Okada, N, Kawai, G.
登録日2016-02-03
公開日2017-02-08
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish.
J. Biochem., 162, 2017
1WYU
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BU of 1wyu by Molmil
Crystal structure of glycine decarboxylase (P-protein) of the glycine cleavage system, in holo form
分子名称: PYRIDOXAL-5'-PHOSPHATE, glycine dehydrogenase (decarboxylating) subunit 1, glycine dehydrogenase subunit 2 (P-protein)
著者Nakai, T, Nakagawa, N, Maoka, N, Masui, R, Kuramitsu, S, Kamiya, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-17
公開日2005-04-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia
Embo J., 24, 2005
5XXT
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BU of 5xxt by Molmil
GDP-microtubule complexed with nucleotide-free KIF5C
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Morikawa, M, Shigematsu, H, Nitta, R, Hirokawa, N.
登録日2017-07-05
公開日2018-10-10
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (5.35 Å)
主引用文献Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport
J. Cell Biol., 217, 2018
5XXW
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BU of 5xxw by Molmil
GDP-microtubule complexed with KIF5C in ATP state
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Morikawa, M, Shigematsu, H, Nitta, R, Hirokawa, N.
登録日2017-07-05
公開日2018-10-10
最終更新日2019-11-06
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Kinesin-binding-triggered conformation switching of microtubules contributes to polarized transport
J. Cell Biol., 217, 2018
5X2L
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BU of 5x2l by Molmil
Crystal Structure of Human Serine Racemase
分子名称: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Serine racemase
著者Obita, T, Matsumoto, K, Mori, H, Toyooka, N, Mizuguchi, M.
登録日2017-02-01
公開日2018-01-31
最終更新日2021-02-24
実験手法X-RAY DIFFRACTION (1.806 Å)
主引用文献Design, synthesis, and evaluation of novel inhibitors for wild-type human serine racemase.
Bioorg. Med. Chem. Lett., 2017
1CPQ
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BU of 1cpq by Molmil
CYTOCHROME C' FROM RHODOPSEUDOMONAS CAPSULATA
分子名称: CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE
著者Tahirov, T.H, Misaki, S, Meyer, T.E, Cusanovich, M.A, Higuchi, Y, Yasuoka, N.
登録日1995-08-14
公開日1996-12-07
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献High-resolution crystal structures of two polymorphs of cytochrome c' from the purple phototrophic bacterium rhodobacter capsulatus.
J.Mol.Biol., 259, 1996
5XJB
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BU of 5xjb by Molmil
The Crystal Structure of the Minimal Core Domain of the Microtubule Depolymerizer KIF2C Complexed with ADP-Mg-BeFx
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Kinesin-like protein KIF2C, ...
著者Ogawa, T, Jiang, X, Hirokawa, N.
登録日2017-04-30
公開日2017-09-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation
Cell Rep, 20, 2017
2HXF
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BU of 2hxf by Molmil
KIF1A head-microtubule complex structure in amppnp-form
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Kinesin-like protein KIF1A, ...
著者Kikkawa, M, Hirokawa, N.
登録日2006-08-03
公開日2006-10-10
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献High-resolution cryo-EM maps show the nucleotide binding pocket of KIF1A in open and closed conformations
Embo J., 25, 2006
5XJA
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BU of 5xja by Molmil
The Crystal Structure of the Minimal Core Domain of the Microtubule Depolymerizer KIF2C Complexed with ADP-Mg-AlFx
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, Kinesin-like protein KIF2C, ...
著者Ogawa, T, Jiang, X, Hirokawa, N.
登録日2017-04-30
公開日2017-09-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.43 Å)
主引用文献Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation
Cell Rep, 20, 2017

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