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PDB: 19 件
6INZ
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BU of 6inz by Molmil
Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular solute-binding protein family 1, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-10-29
公開日2019-09-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.289 Å)
主引用文献Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.
Biosci.Biotechnol.Biochem., 83, 2019
5XS8
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BU of 5xs8 by Molmil
Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1
著者Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W.
登録日2017-06-12
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.952 Å)
主引用文献Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017
5GX7
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BU of 5gx7 by Molmil
Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-6 position of GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.991 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5GUB
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BU of 5gub by Molmil
Crystal structure of solute-binding protein complexed with sulfate group-free unsaturated chondroitin disaccharide
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-08-26
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5GX6
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BU of 5gx6 by Molmil
Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-4 position of GalNAc
分子名称: 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, CALCIUM ION, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5GX8
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BU of 5gx8 by Molmil
Crystal structure of solute-binding protein related to glycosaminoglycans
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.778 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
7VGK
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BU of 7vgk by Molmil
Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI
分子名称: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
著者Iwase, H, Oiki, S, Mikami, B, Takase, R, Hashimoto, W.
登録日2021-09-16
公開日2022-10-19
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs
J.Appl.Glyosci., 2023
3WUX
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BU of 3wux by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
分子名称: 1,2-ETHANEDIOL, Unsaturated chondroitin disaccharide hydrolase
著者Nakamichi, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-08
公開日2014-05-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
to be published
7YRS
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BU of 7yrs by Molmil
Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MOPS
分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, ZINC ION
著者Yamamoto, Y, Oiki, S, Takase, R, Mikami, B, Hashimoto, W.
登録日2022-08-10
公開日2023-08-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.802 Å)
主引用文献Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs.
J Appl Glycosci (1999), 70, 2023
7YE3
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BU of 7ye3 by Molmil
Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MES
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, ZINC ION
著者Yamamoto, Y, Oiki, S, Takase, R, Mikami, B, Hashimoto, W.
登録日2022-07-05
公開日2023-07-05
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.553 Å)
主引用文献Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs.
J Appl Glycosci (1999), 70, 2023
4ZA2
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BU of 4za2 by Molmil
Crystal structure of Pectobacterium carotovorum 2-keto-3-deoxy-D-gluconate dehydrogenase complexed with NAD+
分子名称: 2-deoxy-D-gluconate 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Takase, R, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-04-13
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84, 2016
4U8F
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BU of 4u8f by Molmil
Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase complexed with a tartrate
分子名称: L(+)-TARTARIC ACID, Putative uncharacterized protein gbs1892
著者Maruyama, Y, Oiki, S, Takase, R, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-08-03
公開日2014-12-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans: MOLECULAR IDENTIFICATION AND STRUCTURE DETERMINATION OF STREPTOCOCCAL ISOMERASE AND DEHYDROGENASE.
J.Biol.Chem., 290, 2015
4U8G
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BU of 4u8g by Molmil
Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus agalactiae
分子名称: Putative uncharacterized protein gbs1891
著者Maruyama, Y, Oiki, S, Takase, R, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-08-03
公開日2014-12-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans: MOLECULAR IDENTIFICATION AND STRUCTURE DETERMINATION OF STREPTOCOCCAL ISOMERASE AND DEHYDROGENASE.
J.Biol.Chem., 290, 2015
4Z9X
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BU of 4z9x by Molmil
Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus pyogenes
分子名称: Gluconate 5-dehydrogenase
著者Maruyama, Y, Takase, R, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-04-13
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84, 2016
5Z6C
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BU of 5z6c by Molmil
Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
分子名称: Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
To Be Published
5Z6B
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BU of 5z6b by Molmil
Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.582 Å)
主引用文献Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
4Z9Y
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BU of 4z9y by Molmil
Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Pectobacterium carotovorum
分子名称: 2-deoxy-D-gluconate 3-dehydrogenase, SULFATE ION
著者Takase, R, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-04-13
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84, 2016
4TKZ
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BU of 4tkz by Molmil
Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
分子名称: GLYCEROL, Putative uncharacterized protein gbs1890
著者Nakamichi, Y, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-28
公開日2014-08-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
To Be Published
4U8E
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BU of 4u8e by Molmil
Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase from Streptococcus agalactiae
分子名称: Putative uncharacterized protein gbs1892
著者Maruyama, y, Oiki, S, Takase, R, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-08-03
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans: MOLECULAR IDENTIFICATION AND STRUCTURE DETERMINATION OF STREPTOCOCCAL ISOMERASE AND DEHYDROGENASE
J.Biol.Chem., 290, 2015

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件を2024-10-30に公開中

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