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PDB: 451 results

8UOO
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BU of 8uoo by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum
Descriptor: Asparaginase, CHLORIDE ION, GLYCEROL
Authors:Lubkowski, J, Wlodawer, A, Zhang, D.
Deposit date:2023-10-20
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
8UP7
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BU of 8up7 by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant K19A)
Descriptor: Asparaginase, CHLORIDE ION
Authors:Lubkowski, J, Wlodawer, A, Zhang, D.
Deposit date:2023-10-21
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
8UP8
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Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F, complex with L-Asp)
Descriptor: ASPARTIC ACID, Asparaginase, CHLORIDE ION, ...
Authors:Lubkowski, J, Wlodawer, A, Zhang, D.
Deposit date:2023-10-21
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
8UOW
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BU of 8uow by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21A)
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Asparaginase
Authors:Lubkowski, J, Wlodawer, A, Zhang, D.
Deposit date:2023-10-20
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
8UP3
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BU of 8up3 by Molmil
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F)
Descriptor: 1,2-ETHANEDIOL, ASPARTIC ACID, Asparaginase, ...
Authors:Lubkowski, J, Wlodawer, A, Zhang, D.
Deposit date:2023-10-20
Release date:2024-04-03
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short-chain L-asparaginases.
Protein Sci., 33, 2024
5DVI
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BU of 5dvi by Molmil
High resolution crystal Structure of glucose complexed periplasmic glucose binding protein (ppGBP) from P. putida CSV86
Descriptor: Binding protein component of ABC sugar transporter, GLYCEROL, SULFATE ION, ...
Authors:Pandey, S, Modak, A, Phale, P.S, Bhaumik, P.
Deposit date:2015-09-21
Release date:2016-02-24
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:High Resolution Structures of Periplasmic Glucose-binding Protein of Pseudomonas putida CSV86 Reveal Structural Basis of Its Substrate Specificity
J.Biol.Chem., 291, 2016
6OL2
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BU of 6ol2 by Molmil
Crystallography of novel WNK1 and WNK3 inhibitors discovered from high-throughput-screening
Descriptor: ACETATE ION, GLYCEROL, N-[2-(5,8-dimethoxy-2-oxo-1,2-dihydroquinolin-3-yl)ethyl]-2-iodobenzamide, ...
Authors:Chlebowicz, J, Akella, R, Sekulski, K, Humphreys, J.M, Durbacz, M.Z, He, H, Rodan, A, Posner, B, Goldsmith, E.J.
Deposit date:2019-04-15
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallography of novel WNK1 and WNK3 inhibitors discovered from high throughput screening
To Be Published
9IX8
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BU of 9ix8 by Molmil
Crystallization and structural characterization of phosphopentomutase from the hyperthermophilic archaeon Thermococcus kodakarensis
Descriptor: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, GLYCEROL, Phosphopentomutase
Authors:Naz, Z, Lubkowski, T.J, Saleem, M, Rahman, M, Wlodawer, A, Rashid, N.
Deposit date:2024-07-26
Release date:2024-12-18
Last modified:2025-01-01
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Biophysical Characterization of a Novel Phosphopentomutase from the Hyperthermophilic Archaeon Thermococcus kodakarensis .
Int J Mol Sci, 25, 2024
9DU5
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BU of 9du5 by Molmil
Cryo-EM structure of phosphoglucomutase from Thermococcus kodakarensis
Descriptor: Phosphoglucomutase/phosphomannomutase
Authors:Naz, Z, Rathore, I, Saleem, M, Rahman, M, Rashid, N, Wlodawer, A.
Deposit date:2024-10-02
Release date:2025-04-16
Method:ELECTRON MICROSCOPY (2.45 Å)
Cite:A Bifunctional Phosphoglucomutase/Phosphomannomutase from Thermococcus kodakarensis : Biophysical Analysis and Cryo-EM Structure.
Biomolecules, 15, 2025
6RIX
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BU of 6rix by Molmil
Crystal structure of MchDnaB-1 intein
Descriptor: CHLORIDE ION, Replicative DNA helicase
Authors:Beyer, H.M, Lountos, G.T, Mikula, M.K, Wlodawer, A, Iwai, H.
Deposit date:2019-04-25
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.655 Å)
Cite:The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms.
Int J Mol Sci, 21, 2020
5DVJ
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BU of 5dvj by Molmil
Crystal structure of galactose complexed periplasmic glucose binding protein (ppGBP) from P. putida CSV86
Descriptor: Binding protein component of ABC sugar transporter, GLYCEROL, SULFATE ION, ...
Authors:Pandey, S, Modak, A, Phale, P.S, Bhaumik, P.
Deposit date:2015-09-21
Release date:2016-02-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High Resolution Structures of Periplasmic Glucose-binding Protein of Pseudomonas putida CSV86 Reveal Structural Basis of Its Substrate Specificity
J.Biol.Chem., 291, 2016
6DWF
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BU of 6dwf by Molmil
Crystal structure of complex of BBKI mutant, L55R with Bovine Trypsin
Descriptor: Cationic trypsin, Kunitz-type inihibitor
Authors:Li, M, Wlodawer, A, Gustchina, A.
Deposit date:2018-06-26
Release date:2019-01-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structures of the complex of a kallikrein inhibitor from Bauhinia bauhinioides with trypsin and modeling of kallikrein complexes.
Acta Crystallogr D Struct Biol, 75, 2019
1FSI
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BU of 1fsi by Molmil
CRYSTAL STRUCTURE OF CYCLIC NUCLEOTIDE PHOSPHODIESTERASE OF APPR>P FROM ARABIDOPSIS THALIANA
Descriptor: CYCLIC PHOSPHODIESTERASE, SULFATE ION
Authors:Hofmann, A, Zdanov, A, Genschik, P, Filipowicz, W, Ruvinov, S, Wlodawer, A.
Deposit date:2000-09-10
Release date:2000-11-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and mechanism of activity of the cyclic phosphodiesterase of Appr>p, a product of the tRNA splicing reaction.
EMBO J., 19, 2000
1FAN
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BU of 1fan by Molmil
CREVICE-FORMING MUTANTS IN THE RIGID CORE OF BOVINE PANCREATIC TRYPSIN INHIBITOR: CRYSTAL STRUCTURES OF F22A, Y23A, N43G, AND F45A
Descriptor: BOVINE PANCREATIC TRYPSIN INHIBITOR
Authors:Danishefsky, A.T, Wlodawer, A, Kim, K.-S, Tao, F, Woodward, C.
Deposit date:1992-08-21
Release date:1993-10-31
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crevice-forming mutants in the rigid core of bovine pancreatic trypsin inhibitor: crystal structures of F22A, Y23A, N43G, and F45A.
Protein Sci., 2, 1993
1FMU
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BU of 1fmu by Molmil
STRUCTURE OF NATIVE PROTEINASE A IN P3221 SPACE GROUP.
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, SACCHAROPEPSIN, ...
Authors:Gustchina, A, Li, M, Phylip, L.H, Lees, W.E, Kay, J, Wlodawer, A.
Deposit date:2000-08-18
Release date:2002-07-31
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An unusual orientation for Tyr75 in the active site of the aspartic proteinase from Saccharomyces cerevisiae.
Biochem.Biophys.Res.Commun., 295, 2002
6V25
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BU of 6v25 by Molmil
Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp
Descriptor: ASPARTIC ACID, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6A6N
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BU of 6a6n by Molmil
Crystal structure of an inward-open apo state of the eukaryotic ABC multidrug transporter CmABCB1
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ATP-binding cassette, sub-family B, ...
Authors:Kato, H, Nakatsu, T, Kodan, A.
Deposit date:2018-06-28
Release date:2019-01-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Inward- and outward-facing X-ray crystal structures of homodimeric P-glycoprotein CmABCB1.
Nat Commun, 10, 2019
6V24
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BU of 6v24 by Molmil
Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp. Covalent acyl-enzyme intermediate.
Descriptor: ASPARTIC ACID, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V2G
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BU of 6v2g by Molmil
Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp. Covalent acyl-enzyme intermediate and tetrahedral intermediate.
Descriptor: L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V2A
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BU of 6v2a by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asn
Descriptor: ASPARAGINE, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V2B
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BU of 6v2b by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asn
Descriptor: ASPARAGINE, CITRIC ACID, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V28
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BU of 6v28 by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asp
Descriptor: GLYCEROL, IMIDAZOLE, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V29
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BU of 6v29 by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asp
Descriptor: ASPARTIC ACID, GLYCEROL, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V26
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BU of 6v26 by Molmil
Complex of mutant (K162M) of E. coli L-asparaginase II with L-Asp
Descriptor: ASPARTIC ACID, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020
6V27
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BU of 6v27 by Molmil
Complex of double mutant (T89V,K162T) of E. coli L-asparaginase II with L-Asp
Descriptor: L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-11-22
Release date:2020-05-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of Catalysis by l-Asparaginase.
Biochemistry, 59, 2020

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