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PDB: 23 件
1AT5
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HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, LYSOZYME, ...
著者Noguchi, S, Miyawaki, K, Satow, Y.
登録日1997-08-18
公開日1998-02-25
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.
J.Mol.Biol., 278, 1998
1AT6
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HEN EGG WHITE LYSOZYME WITH A ISOASPARTATE RESIDUE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, LYSOZYME
著者Noguchi, S, Miyawaki, K, Satow, Y.
登録日1997-08-19
公開日1998-02-25
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Succinimide and isoaspartate residues in the crystal structures of hen egg-white lysozyme complexed with tri-N-acetylchitotriose.
J.Mol.Biol., 278, 1998
1RTU
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USTILAGO SPHAEROGENA RIBONUCLEASE U2
分子名称: RIBONUCLEASE U2, SULFATE ION
著者Noguchi, S, Satow, Y, Uchida, T, Sasaki, C, Matsuzaki, T.
登録日1995-05-12
公開日1996-11-08
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of Ustilago sphaerogena ribonuclease U2 at 1.8 A resolution.
Biochemistry, 34, 1995
3AGO
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Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 3'-monophosphate
分子名称: CALCIUM ION, CHLORIDE ION, Ribonuclease U2, ...
著者Noguchi, S.
登録日2010-04-03
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate
Acta Crystallogr.,Sect.D, 66, 2010
3AGN
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Crystal Structure of Ustilago sphaerogena Ribonuclease U2 Complexed with adenosine 3'-monophosphate
分子名称: CALCIUM ION, Ribonuclease U2, [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate
著者Noguchi, S.
登録日2010-04-03
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.96 Å)
主引用文献Isomerization mechanism of aspartate to isoaspartate implied by structures of Ustilago sphaerogena ribonuclease U2 complexed with adenosine 3'-monophosphate
Acta Crystallogr.,Sect.D, 66, 2010
3AHS
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BU of 3ahs by Molmil
Crystal Structure of Ustilago sphaerogena Ribonuclease U2B
分子名称: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ...
著者Noguchi, S.
登録日2010-04-29
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献Structural changes induced by the deamidation and isomerization of asparagine revealed by the crystal structure of Ustilago sphaerogena ribonuclease U2B
Biopolymers, 93, 2010
3AHW
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Crystal Structure of Ustilago sphaerogena Ribonuclease U2 complexed with adenosine 2'-monophosphate
分子名称: ADENOSINE-2'-MONOPHOSPHATE, CALCIUM ION, Ribonuclease U2
著者Noguchi, S.
登録日2010-05-04
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Conformational variation revealed by the crystal structure of RNase U2A complexed with Ca ion and 2'-adenylic acid at 1.03 angstrom resolution.
Protein Pept.Lett., 17, 2010
1A0F
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BU of 1a0f by Molmil
CRYSTAL STRUCTURE OF GLUTATHIONE S-TRANSFERASE FROM ESCHERICHIA COLI COMPLEXED WITH GLUTATHIONESULFONIC ACID
分子名称: GLUTATHIONE S-TRANSFERASE, GLUTATHIONE SULFONIC ACID
著者Nishida, M, Harada, S, Noguchi, S, Inoue, H, Takahashi, K, Satow, Y.
登録日1997-11-29
公開日1999-01-13
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Three-dimensional structure of Escherichia coli glutathione S-transferase complexed with glutathione sulfonate: catalytic roles of Cys10 and His106.
J.Mol.Biol., 281, 1998
6IDH
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BU of 6idh by Molmil
Antibody 64M-5 Fab in ligand-free form
分子名称: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
著者Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
登録日2018-09-10
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms.
Acta Crystallogr.,Sect.F, 75, 2019
6KDI
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Antibody 64M-5 Fab including isoAsp in complex with dT(6-4)T
分子名称: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), DNA (5'-D(*(64T)P*(5PY))-3')
著者Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
登録日2019-07-02
公開日2019-12-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.
Sci Rep, 9, 2019
6KDH
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BU of 6kdh by Molmil
Antibody 64M-5 Fab including isoAsp in ligand-free form
分子名称: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain)
著者Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
登録日2019-07-02
公開日2019-12-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Structural and biochemical basis of the formation of isoaspartate in the complementarity-determining region of antibody 64M-5 Fab.
Sci Rep, 9, 2019
6IDG
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BU of 6idg by Molmil
antibody 64M-5 Fab in complex with dT(6-4)T
分子名称: Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain), Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain), DNA (5'-D(*(64T)P*(5PY))-3')
著者Yokoyama, H, Mizutani, R, Noguchi, S, Hayashida, N.
登録日2018-09-10
公開日2019-02-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of the antibody 64M-5 Fab and its complex with dT(6-4)T indicate induced-fit and high-affinity mechanisms.
Acta Crystallogr.,Sect.F, 75, 2019
2D17
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BU of 2d17 by Molmil
Solution RNA structure of stem-bulge-stem region of the HIV-1 dimerization initiation site
分子名称: 5'-R(*CP*GP*GP*CP*AP*AP*GP*AP*GP*GP*CP*GP*AP*CP*CP*C)-3', 5'-R(*GP*GP*GP*UP*CP*GP*GP*CP*UP*UP*GP*CP*UP*G)-3'
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1A
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BU of 2d1a by Molmil
Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer
分子名称: RNA
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D18
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Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the extended-duplex dimer
分子名称: 5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D1B
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BU of 2d1b by Molmil
Solution RNA structure model of the HIV-1 dimerization initiation site in the kissing-loop dimer
分子名称: RNA
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
2D19
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Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the kissing-loop dimer
分子名称: 5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'
著者Baba, S, Takahashi, K, Noguchi, S, Takaku, H, Koyanagi, Y, Yamamoto, N, Kawai, G.
登録日2005-08-15
公開日2005-11-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.
J.Biochem.(Tokyo), 138, 2005
3AK9
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BU of 3ak9 by Molmil
Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis, FE-soaked form
分子名称: DNA protection during starvation protein, FE (II) ION, MAGNESIUM ION, ...
著者Miyamoto, T, Asahina, Y, Miyazaki, S, Shimizu, H, Ohto, U, Noguchi, S, Satow, Y.
登録日2010-07-08
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Acta Crystallogr.,Sect.F, 67, 2011
3AK8
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Crystal structure of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
分子名称: DNA protection during starvation protein, MAGNESIUM ION, SULFATE ION
著者Miyamoto, T, Asahina, Y, Miyazaki, S, Shimizu, H, Ohto, U, Noguchi, S, Satow, Y.
登録日2010-07-08
公開日2011-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structures of the SEp22 dodecamer, a Dps-like protein from Salmonella enterica subsp. enterica serovar Enteritidis
Acta Crystallogr.,Sect.F, 67, 2011
3AGZ
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Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70
分子名称: DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein
著者Suzuki, H, Noguchi, S, Satow, Y.
登録日2010-04-12
公開日2011-02-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3AGX
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Crystal structure of human Hsp40 Hdj1 peptide-binding domain
分子名称: DnaJ homolog subfamily B member 1
著者Suzuki, H, Noguchi, S, Satow, Y.
登録日2010-04-12
公開日2011-02-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3AGY
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BU of 3agy by Molmil
Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70
分子名称: DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein
著者Suzuki, H, Noguchi, S, Satow, Y.
登録日2010-04-12
公開日2011-02-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70
Biochemistry, 49, 2010
3VPK
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Crystal Structure of 6-Guanidinohexanoyl Trypsin
分子名称: 6-carbamimidamidohexanoic acid, CALCIUM ION, Cationic trypsin, ...
著者Masuda, Y, Nitanai, Y, Mizutani, R, Noguchi, S.
登録日2012-03-05
公開日2012-05-23
最終更新日2013-02-06
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of 6-guanidinohexanoyl trypsin near the optimum pH reveals the acyl-enzyme intermediate to be deacylated
Proteins, 2012

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