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PDB: 51 件
7BUL
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BU of 7bul by Molmil
Solution structure of the tandem PH and BSD1 domains of TFIIH p62
分子名称: General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2020-04-07
公開日2020-12-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural and dynamical insights into the PH domain of p62 in human TFIIH.
Nucleic Acids Res., 49, 2021
2RO0
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BU of 2ro0 by Molmil
Solution structure of the knotted tudor domain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RNZ
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BU of 2rnz by Molmil
Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RVQ
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BU of 2rvq by Molmil
Solution structure of the isolated histone H2A-H2B heterodimer
分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J
著者Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
登録日2016-03-28
公開日2016-05-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
5GOW
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BU of 5gow by Molmil
Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain
分子名称: DP1, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2016-07-29
公開日2016-12-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH
J. Mol. Biol., 428, 2016
2DY7
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BU of 2dy7 by Molmil
Solution structure of the first chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2CZY
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BU of 2czy by Molmil
Solution structure of the NRSF/REST-mSin3B PAH1 complex
分子名称: Paired amphipathic helix protein Sin3b, transcription factor REST (version 3)
著者Nomura, M, Uda-Tochio, H, Murai, K, Mori, N, Nishimura, Y.
登録日2005-07-20
公開日2005-12-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The Neural Repressor NRSF/REST Binds the PAH1 Domain of the Sin3 Corepressor by Using its Distinct Short Hydrophobic Helix
J.Mol.Biol., 354, 2005
2DY8
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BU of 2dy8 by Molmil
Solution structure of the second chromodomain of yeast Chd1
分子名称: Chromo domain protein 1
著者Okuda, M, Nishimura, Y.
登録日2006-09-07
公開日2006-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2RNQ
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BU of 2rnq by Molmil
Solution structure of the C-terminal acidic domain of TFIIE alpha
分子名称: Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RSO
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BU of 2rso by Molmil
Solution structure of the chromodomain of Swi6
分子名称: Chromatin-associated protein swi6
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RNR
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BU of 2rnr by Molmil
Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain
分子名称: TFIIH basal transcription factor complex p62 subunit, Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RSN
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BU of 2rsn by Molmil
Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide
分子名称: Chromo domain-containing protein 1, peptide from Histone H3
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
6K5W
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BU of 6k5w by Molmil
Solution structure of the chromodomain of yeast Eaf3
分子名称: Chromatin modification-related protein EAF3
著者Okuda, M, Nishimura, Y.
登録日2019-05-31
公開日2020-02-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues.
Biosci.Rep., 40, 2020
1BHI
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BU of 1bhi by Molmil
STRUCTURE OF TRANSACTIVATION DOMAIN OF CRE-BP1/ATF-2, NMR, 20 STRUCTURES
分子名称: CRE-BP1
著者Nagadoi, A, Nakazawa, K, Uda, H, Maekawa, T, Ishii, S, Nishimura, Y.
登録日1998-06-09
公開日1999-06-15
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the transactivation domain of ATF-2 comprising a zinc finger-like subdomain and a flexible subdomain.
J.Mol.Biol., 287, 1999
1BA5
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BU of 1ba5 by Molmil
DNA-BINDING DOMAIN OF HUMAN TELOMERIC PROTEIN, HTRF1, NMR, 18 STRUCTURES
分子名称: HTRF1
著者Nishikawa, T, Nagadoi, A, Yoshimura, S, Aimoto, S, Nishimura, Y.
登録日1998-04-22
公開日1999-04-27
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the DNA-binding domain of human telomeric protein, hTRF1.
Structure, 6, 1998
2RVB
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BU of 2rvb by Molmil
Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
分子名称: DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2015-07-01
公開日2015-09-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC.
Structure, 23, 2015
2RVM
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BU of 2rvm by Molmil
Solution structure of the chromodomain of HP1alpha with the phosphorylated N-terminal tail
分子名称: Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RUK
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BU of 2ruk by Molmil
Solution structure of the complex between p53 transactivation domain 2 and TFIIH p62 PH domain
分子名称: Cellular tumor antigen p53, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2014-09-24
公開日2014-10-15
最終更新日2022-08-24
実験手法SOLUTION NMR
主引用文献Extended string binding mode of the phosphorylated transactivation domain of tumor suppressor p53.
J.Am.Chem.Soc., 136, 2014
2RVN
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BU of 2rvn by Molmil
Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide
分子名称: 18-mer peptide of Histone H3, Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RVL
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BU of 2rvl by Molmil
Solution structure of the chromodomain of HP1alpha with the N-terminal tail
分子名称: Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
1J05
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BU of 1j05 by Molmil
The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
分子名称: GLYCEROL, PHOSPHATE ION, anti-CEA mAb T84.66, ...
著者Kondo, H, Nishimura, Y, Shiroishi, M, Asano, R, Noro, N, Tsumoto, K, Kumagai, I.
登録日2002-11-01
公開日2003-12-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
3APM
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BU of 3apm by Molmil
Crystal structure of the human SNP PAD4 protein
分子名称: Protein-arginine deiminase type-4
著者Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
登録日2010-10-19
公開日2011-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
3APN
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BU of 3apn by Molmil
Crystal structure of the human wild-type PAD4 protein
分子名称: Protein-arginine deiminase type-4
著者Horikoshi, N, Tachiwana, H, Saito, K, Osakabe, A, Sato, M, Yamada, M, Akashi, S, Nishimura, Y, Kagawa, W, Kurumizaka, H.
登録日2010-10-19
公開日2011-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural and biochemical analyses of the human PAD4 variant encoded by a functional haplotype gene
Acta Crystallogr.,Sect.D, 67, 2011
1IV6
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BU of 1iv6 by Molmil
Solution Structure of the DNA Complex of Human TRF1
分子名称: 5'-D(*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*C)-3', 5'-D(*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3', TELOMERIC REPEAT BINDING FACTOR 1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-03-14
公開日2002-04-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1.
Structure, 9, 2001
1ITY
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BU of 1ity by Molmil
Solution structure of the DNA binding domain of human TRF1
分子名称: TRF1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-02-15
公開日2002-03-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1
Structure, 9, 2001

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