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PDB: 70 件
1KUQ
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CRYSTAL STRUCTURE OF T3C MUTANT S15 RIBOSOMAL PROTEIN IN COMPLEX WITH 16S RRNA
分子名称: 16S RIBOSOMAL RNA FRAGMENT, 30S RIBOSOMAL PROTEIN S15, SULFATE ION
著者Nikulin, A.D, Tishchenko, S, Revtovich, S, Ehresmann, B, Ehresmann, C, Dumas, P, Garber, M, Nikonov, S, Nevskaya, N.
登録日2002-01-22
公開日2003-06-24
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Role of N-terminal helix in interaction of ribosomal protein S15 with 16S rRNA.
Biochemistry Mosc., 69, 2004
1U1S
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Hfq protein from Pseudomonas aeruginosa. Low-salt crystals
分子名称: Hfq protein
著者Nikulin, A.D, Stolboushkina, E.A, Perederina, I, Vassilieva, I.M, Blaesi, U, Moll, I, Kachalova, G, Vassylyev, D, Yokoyama, S, Garber, M, Nikonov, S.V, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-16
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005
8P91
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Hfq from Chromobacterium haemolyticum; a P6 space group monomer
分子名称: RNA-binding protein Hfq
著者Nikulin, A.D, Lekontseva, N.V.
登録日2023-06-05
公開日2023-07-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Hfq from Chromobacterium haemolyticum
Crystallography Reports
1U1T
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Hfq protein from Pseudomonas aeruginosa. High-salt crystals
分子名称: Hfq protein
著者Nikulin, A.D, Stolboushkina, E.A, Perederina, A.A, Vassilieva, I.M, Blaesi, U, Moll, I, Kachalova, G, Yokoyama, S, Vassylyev, D, Garber, M, Nikonov, S.V, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-16
公開日2005-01-25
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005
8P9M
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Hexameric Hfq from Chromobacterium haemolyticum
分子名称: GLYCEROL, RNA-binding protein Hfq
著者Nikulin, A.D, Lekontseva, N.V.
登録日2023-06-06
公開日2024-05-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Structure of the Hfq Protein from Chromobacterium haemolyticum Revealed a New Variant of Regulation of RNA Binding with the Protein
Crystallography Reports, 68, 2023
4X9C
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1.4A crystal structure of Hfq from Methanococcus jannaschii
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Nikulin, A.D, Tishchenko, S.V, Nikonova, S.V, Murina, V.N, Mihailina, A.O, Lekontseva, N.V.
登録日2014-12-11
公開日2014-12-24
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii.
J. Biomol. Struct. Dyn., 35, 2017
4X9D
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High-resolution structure of Hfq from Methanococcus jannaschii in complex with UMP
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Nikulin, A.D, Tishchenko, S.V, Nikonova, E.Y, Murina, V.N, Mihailina, A.O, Lekontseva, N.V.
登録日2014-12-11
公開日2015-12-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii.
J. Biomol. Struct. Dyn., 35, 2017
5I21
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Y55W Hfq from Pseudomonas aeruginosa
分子名称: CHLORIDE ION, RNA-binding protein Hfq
著者Nikulin, A.D, Lekontseva, N.V.
登録日2016-02-08
公開日2016-03-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Y55W Hfq from Pseudomonas aeruginosa
To Be Published
3QUI
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BU of 3qui by Molmil
Crystal structure of Pseudomonas aeruginosa Hfq in complex with ADPNP
分子名称: ADENINE, ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
著者Nikulin, A.D, Murina, V.N, Gabdulkhakov, A.G.
登録日2011-02-24
公開日2012-02-08
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.933 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
6TFL
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BU of 6tfl by Molmil
Lsm protein (SmAP) from Halobacterium salinarum
分子名称: CALCIUM ION, GLYCEROL, RNA-binding protein Lsm, ...
著者Nikulin, A.D, Fando, M.S, Lekontseva, N.V.
登録日2019-11-14
公開日2020-11-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Structure and RNA-Binding Properties of Lsm Protein from Halobacterium salinarum.
Biochemistry Mosc., 86, 2021
5MKI
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Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Like-Sm ribonucleoprotein core
著者Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.048 Å)
主引用文献Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
5MKL
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BU of 5mkl by Molmil
Crystal structure of SmAP (LSm) protein from Sulfolobus acidocaldarius
分子名称: Sm ribonucleo
著者Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.086 Å)
主引用文献Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.
Biochimie, 175, 2020
1DK1
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BU of 1dk1 by Molmil
DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX
分子名称: 30S RIBOSOMAL PROTEIN S15, MAGNESIUM ION, POTASSIUM ION, ...
著者Nikulin, A, Serganov, A, Ennifar, E, Tischenko, S, Nevskaya, N.
登録日1999-12-06
公開日2000-04-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the S15-rRNA complex.
Nat.Struct.Biol., 7, 2000
6XYJ
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Hfq from E.coli with inserted long loop L4 sequence
分子名称: RNA-binding protein Hfq
著者Nikulin, A.D, Alipov, A.A, Lekontseva, N.V.
登録日2020-01-30
公開日2021-02-10
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.772 Å)
主引用文献Structure of a Mutant Form of Translation Regulator Hfq with the Extended Loop L4
Crystallography Reports, 66, 2021
1MZP
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BU of 1mzp by Molmil
Structure of the L1 protuberance in the ribosome
分子名称: 50s ribosomal protein L1P, MAGNESIUM ION, fragment of 23S rRNA
著者Nikulin, A, Eliseikina, I, Tishchenko, S, Nevskaya, N, Davydova, N, Platonova, O, Piendl, W, Selmer, M, Liljas, A, Zimmermann, R, Garber, M, Nikonov, S.
登録日2002-10-09
公開日2003-01-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure of the L1 protuberance in the ribosome.
Nat.Struct.Biol., 10, 2003
2RFV
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BU of 2rfv by Molmil
High resolution structure of L-methionine gamma-lyase from Citrobacter freundii
分子名称: CHLORIDE ION, Methionine gamma-lyase
著者Nikulin, A.D, Revtovich, S.V, Morozova, E.A, Nevskaya, N.A, Nikonov, S.V, Garber, M.B, Demidkina, T.V.
登録日2007-10-02
公開日2008-08-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.355 Å)
主引用文献High-resolution structure of methionine gamma-lyase from Citrobacter freundii.
Acta Crystallogr.,Sect.D, 64, 2008
4J6X
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BU of 4j6x by Molmil
Crystal structure of Hfq from Pseudomonas aeruginosa in complex with UTP
分子名称: Protein hfq, URIDINE 5'-TRIPHOSPHATE
著者Nikulin, A.D, Murina, V, Lekontseva, N.
登録日2013-02-12
公開日2013-07-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.222 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
5MKN
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BU of 5mkn by Molmil
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
分子名称: Like-Sm ribonucleoprotein core, TETRAETHYLENE GLYCOL, URIDINE-5'-MONOPHOSPHATE
著者Nikulin, A.D, Lekontseva, N.V, Tishchenko, S.V, Kravchenko, O.V.
登録日2016-12-05
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of SmAP (LSm) protein from Methanococcus vannielii in complex with URIDINE-5'-MONOPHOSPHATE
To Be Published
4J6Y
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Hfq from Pseudomonas aeruginosa crystallized in GTP presence
分子名称: CADMIUM ION, Protein hfq
著者Nikulin, A.D, Murina, V, Lekontseva, N.
登録日2013-02-12
公開日2013-07-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1405 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
4J6W
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Crystal structure of HFQ from Pseudomonas aeruginosa in complex with CTP
分子名称: CHLORIDE ION, CYTIDINE-5'-DIPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, ...
著者Nikulin, A.D, Murina, V, Lekontseva, N.
登録日2013-02-12
公開日2013-07-31
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Hfq binds ribonucleotides in three different RNA-binding sites.
Acta Crystallogr.,Sect.D, 69, 2013
5DY9
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BU of 5dy9 by Molmil
Y68T Hfq from Methanococcus jannaschii in complex with AMP
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
著者Nikulin, A.D, Mikhailina, A.O, Lekontseva, N.V, Balobanov, V.A, Nikonova, E.Y, Tishchenko, S.V.
登録日2015-09-24
公開日2016-09-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Characterization of RNA-binding properties of the archaeal Hfq-like protein from Methanococcus jannaschii.
J. Biomol. Struct. Dyn., 35, 2017
5K30
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Crystal structure of methionine gamma-lyase from Citrobacter freundii modified by S-Ethyl-L-cysteine sulfoxide
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, Methionine gamma-lyase, ...
著者Revtovich, S.V, Nikulin, A.D, Morozova, E.A, Demidkina, T.V.
登録日2016-05-19
公開日2017-07-12
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Sulfoxides of sulfur-containing amino acids are suicide substrates of Citrobacter freundii methionine gamma-lyase. Structural bases of the enzyme inactivation.
Biochimie, 168, 2020
6EGR
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Crystal structure of Citrobacter freundii methionine gamma-lyase with V358Y replacement
分子名称: DI(HYDROXYETHYL)ETHER, Methionine gamma-lyase, PYRIDOXAL-5'-PHOSPHATE, ...
著者Revtovich, S.V, Demitri, N, Raboni, S, Nikulin, A.D, Morozova, E.A, Demidkina, T.V, Storici, P, Mozzarelli, A.
登録日2017-09-12
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Engineering methionine gamma-lyase from Citrobacter freundii for anticancer activity.
Biochim Biophys Acta Proteins Proteom, 1866, 2018
1I6U
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BU of 1i6u by Molmil
RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
分子名称: 16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION
著者Tishchenko, S, Nikulin, A, Fomenkova, N, Nevskaya, N, Nikonov, O, Dumas, P, Moine, H, Ehresmann, B, Ehresmann, C, Piendl, W, Lamzin, V, Garber, M, Nikonov, S.
登録日2001-03-05
公開日2001-08-03
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
J.Mol.Biol., 311, 2001
6S0C
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BU of 6s0c by Molmil
Crystal structure of methionine gamma-lyase from Citrobacter freundii modified by dimethylthiosulfinate
分子名称: Cystathionine gamma-synthase, PYRIDOXAL-5'-PHOSPHATE, TRIETHYLENE GLYCOL
著者Revtovich, S.V, Morozova, E.A, Nikulin, A.D, Demidkina, T.V.
登録日2019-06-14
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Sulfoxides of sulfur-containing amino acids are suicide substrates of Citrobacter freundii methionine gamma-lyase. Structural bases of the enzyme inactivation.
Biochimie, 168, 2020

 

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