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PDB: 96 件
2EB1
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Crystal Structure of the C-Terminal RNase III Domain of Human Dicer
分子名称: Endoribonuclease Dicer, MAGNESIUM ION
著者Takeshita, D, Zenno, S, Lee, W.C, Nagata, K, Saigo, K, Tanokura, M.
登録日2007-02-05
公開日2007-11-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Homodimeric Structure and Double-stranded RNA Cleavage Activity of the C-terminal RNase III Domain of Human Dicer
J.Mol.Biol., 374, 2007
3ADF
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Crystal structure of a monomeric green fluorescent protein, Azami-Green (mAG)
分子名称: Monomeric Azami Green
著者Ebisawa, T, Yamamura, A, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M.
登録日2010-01-20
公開日2010-05-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The structure of mAG, a monomeric mutant of the green fluorescent protein Azami-Green, reveals the structural basis of its stable green emission
Acta Crystallogr.,Sect.F, 66, 2010
2ZO4
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Crystal structure of metallo-beta-lactamase family protein TTHA1429 from Thermus thermophilus HB8
分子名称: Metallo-beta-lactamase family protein, ZINC ION
著者Yamamura, A, Nagata, K, Agari, Y, Ebihara, A, Nakagawa, N, Yokoyama, S, Kuramitsu, S, Tanokura, M.
登録日2008-05-05
公開日2009-03-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of TTHA1429, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8.
Proteins, 73, 2008
3VXG
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Crystal structure of conjugated polyketone reductase C2 from Candida Parapsilosis
分子名称: Conjugated polyketone reductase C2
著者Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
登録日2012-09-13
公開日2013-08-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding
Appl.Microbiol.Biotechnol., 98, 2014
3WG6
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BU of 3wg6 by Molmil
Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH
分子名称: Conjugated polyketone reductase C1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
登録日2013-07-28
公開日2013-08-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH.
Proteins, 81, 2013
3WAF
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X-ray structure of apo-TtFbpA, a ferric ion-binding protein from thermus thermophilus HB8
分子名称: ISOPROPYL ALCOHOL, Iron ABC transporter, periplasmic iron-binding protein
著者Wang, S, Ogata, M, Horita, S, Ohtsuka, J, Nagata, K, Tanokura, M.
登録日2013-05-02
公開日2014-05-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.D, 70, 2014
3WAE
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X-ray structure of Fe(III)-bicarbonates-ttfbpa, a ferric ion-binding protein from thermus thermophilus HB8
分子名称: BICARBONATE ION, FE (III) ION, IRON ABC TRANSPORTER, ...
著者Wang, S, Ogata, M, Horita, S, Ohtsuka, J, Nagata, K, Tanokura, M.
登録日2013-05-02
公開日2014-05-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A novel mode of ferric ion coordination by the periplasmic ferric ion-binding subunit FbpA of an ABC-type iron transporter from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.D, 70, 2014
3WLX
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Crystal structure of low-specificity L-threonine aldolase from Escherichia coli
分子名称: Low specificity L-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
著者Qin, H.-M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Hou, F, Ohtsuka, J, Nagata, K, Shimizu, S, Tanokura, M.
登録日2013-11-15
公開日2014-12-17
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Structure analysis of L-threonine aldolase from Escherichia coli unravels the low-specificity and thermostability
To be Published
3ZFK
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N-terminal truncated Nuclease Domain of Colicin E7
分子名称: ACETATE ION, CHLORIDE ION, COLICIN-E7, ...
著者Toth, E, Czene, A, Gyurcsik, B, Otten, H, Poulsen, J.-C.N, Larsen, S, Christensen, H.E.M, Nagata, K.
登録日2012-12-11
公開日2013-12-18
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A New Insight Into the Zinc-Dependent DNA-Cleavage by the Colicin E7 Nuclease: A Crystallographic and Computational Study.
Metallomics, 6, 2014
2YYS
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Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
分子名称: GLYCEROL, Proline iminopeptidase-related protein
著者Okai, M, Miyauchi, Y, Ebihara, A, Lee, W.C, Nagata, K, Tanokura, M.
登録日2007-05-01
公開日2008-02-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Proteins, 70, 2008
2D7J
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Crystal Structure Analysis of Glutamine Amidotransferase from Pyrococcus horikoshii OT3
分子名称: GMP synthase [glutamine-hydrolyzing] subunit A
著者Maruoka, S, Lee, W.C, Kamo, M, Kudo, N, Nagata, K, Tanokura, M.
登録日2005-11-21
公開日2006-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Crystal structure of glutamine amidotransferase from Pyrococcus horikoshii OT3
PROC.JPN.ACAD.,SER.B, 81, 2005
2D37
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The Crystal Structure of Flavin Reductase HpaC complexed with NAD+
分子名称: FLAVIN MONONUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, hypothetical NADH-dependent FMN oxidoreductase
著者Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M.
登録日2005-09-26
公開日2006-05-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
2D36
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The Crystal Structure of Flavin Reductase HpaC
分子名称: FLAVIN MONONUCLEOTIDE, hypothetical NADH-dependent FMN oxidoreductase
著者Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M.
登録日2005-09-26
公開日2006-05-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
2D38
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The Crystal Structure of Flavin Reductase HpaC complexed with NADP+
分子名称: FLAVIN MONONUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, hypothetical NADH-dependent FMN oxidoreductase
著者Okai, M, Kudo, N, Lee, W.C, Kamo, M, Nagata, K, Tanokura, M.
登録日2005-09-26
公開日2006-05-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structures of the short-chain flavin reductase HpaC from Sulfolobus tokodaii strain 7 in its three states: NAD(P)(+)(-)free, NAD(+)(-)bound, and NADP(+)(-)bound
Biochemistry, 45, 2006
2ZNL
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BU of 2znl by Molmil
Crystal structure of PA-PB1 complex form influenza virus RNA polymerase
分子名称: Polymerase acidic protein, RNA-directed RNA polymerase catalytic subunit
著者Obayashi, E, Yoshida, H, Kawai, F, Shibayama, N, Kawaguchi, A, Nagata, K, Tame, J.R.H, Park, S.-Y.
登録日2008-04-28
公開日2008-09-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The structural basis for an essential subunit interaction in influenza virus RNA polymerase
Nature, 454, 2008
2ZWR
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Crystal structure of TTHA1623 from thermus thermophilus HB8
分子名称: Metallo-beta-lactamase superfamily protein, ZINC ION
著者Yamamura, A, Okada, A, Kameda, Y, Ohtsuka, J, Nakagawa, N, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M.
登録日2008-12-17
公開日2009-10-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of TTHA1623, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 65, 2009
2ZZI
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Crystal structure of TTHA1623 in a di-iron-bound form
分子名称: ACETATE ION, FE (III) ION, Metallo-beta-lactamase superfamily protein
著者Yamamura, A, Okada, A, Kameda, Y, Ohtsuka, J, Nakagawa, N, Ebihara, A, Yokoyama, S, Kuramitsu, S, Nagata, K, Tanokura, M.
登録日2009-02-16
公開日2010-01-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of TTHA1623, a novel metallo-beta-lactamase superfamily protein from Thermus thermophilus HB8
Acta Crystallogr.,Sect.F, 65, 2009
3A4I
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Crystal structure of GMP synthetase PH1347 from Pyrococcus horikoshii OT3
分子名称: GMP synthase [glutamine-hydrolyzing] subunit B
著者Maruoka, S, Horita, S, Lee, W.C, Nagata, K, Tanokura, M.
登録日2009-07-07
公開日2009-07-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Crystal structure of the ATPPase subunit and its substrate-dependent association with the GATase Subunit: a novel regulatory mechanism for a two-subunit-type GMP synthetase from Pyrococcus horikoshii OT3.
J.Mol.Biol., 395, 2010
3AK4
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Crystal structure of NADH-dependent quinuclidinone reductase from agrobacterium tumefaciens
分子名称: NADH-dependent quinuclidinone reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Miyakawa, T, Kataoka, M, Takeshita, D, Nomoto, F, Nagata, K, Shimizu, S, Tanokura, M.
登録日2010-07-07
公開日2011-07-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of NADH-dependent quinuclidinone reductase from Agrobacterium tumefaciens
To be Published
3AEV
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Crystal structure of a/eIF2alpha-aDim2p-rRNA complex from Pyrococcus horikoshii OT3
分子名称: Putative uncharacterized protein PH1566, RNA (5'-R(*GP*GP*AP*UP*CP*AP*CP*CP*UP*CP*C)-3'), Translation initiation factor 2 subunit alpha
著者Tanokura, M, Jia, M.Z, Nagata, K.
登録日2010-02-10
公開日2010-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献An archaeal Dim2-like protein, aDim2p, forms a ternary complex with a/eIF2 alpha and the 3' end fragment of 16S rRNA
J.Mol.Biol., 398, 2010
2EJX
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Crystal structure of the hypothetical protein STK_08120 from Sulfolobus tokodaii
分子名称: STK_08120
著者Miyakawa, T, Miyazono, K, Sawano, Y, Hatano, K, Nagata, K, Tanokura, M.
登録日2007-03-21
公開日2008-03-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献A thermoacidophile-specific protein family, DUF3211, functions as a fatty acid carrier with novel binding mode
J.Bacteriol., 195, 2013
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