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PDB: 96 件
1IX5
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BU of 1ix5 by Molmil
Solution structure of the Methanococcus thermolithotrophicus FKBP
分子名称: FKBP
著者Suzuki, R, Nagata, K, Kawakami, M, Nemoto, N, Furutani, M, Adachi, K, Maruyama, T, Tanokura, M.
登録日2002-06-12
公開日2003-06-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Three-dimensional Solution Structure of an Archaeal FKBP with a Dual Function of Peptidyl Prolyl cis-trans Isomerase and Chaperone-like Activities
J.MOL.BIOL., 328, 2003
1K1Z
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BU of 1k1z by Molmil
Solution structure of N-terminal SH3 domain mutant(P33G) of murine Vav
分子名称: vav
著者Ogura, K, Nagata, K, Horiuchi, M, Ebisui, E, Hasuda, T, Yuzawa, S, Nishida, M, Hatanaka, H, Inagaki, F.
登録日2001-09-26
公開日2001-10-10
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of N-terminal SH3 domain of Vav and the recognition site for Grb2 C-terminal SH3 domain
J.BIOMOL.NMR, 22, 2002
1J0T
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BU of 1j0t by Molmil
The solution structure of molt-inhibiting hormone from the kuruma prawn
分子名称: MOLT-INHIBITING HORMONE
著者Katayama, H, Nagata, K, Ohira, T, Yumoto, F, Tanokura, M, Nagasawa, H.
登録日2002-11-22
公開日2002-12-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus
J.Biol.Chem., 278, 2003
4H8N
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BU of 4h8n by Molmil
Crystal structure of conjugated polyketone reductase C2 from candida parapsilosis complexed with NADPH
分子名称: Conjugated polyketone reductase C2, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
登録日2012-09-23
公開日2013-08-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of conjugated polyketone reductase from Candida parapsilosis IFO 0708 reveals conformational changes for substrate recognition upon NADPH binding
Appl.Microbiol.Biotechnol., 98, 2014
2RQY
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BU of 2rqy by Molmil
Solution structure and dynamics of mouse ARMET
分子名称: Putative uncharacterized protein
著者Hoseki, J, Sasakawa, H, Yamaguchi, Y, Maeda, M, Kubota, H, Kato, K, Nagata, K.
登録日2010-01-26
公開日2010-04-21
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Solution structure and dynamics of mouse ARMET.
Febs Lett., 584, 2010
1GCQ
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BU of 1gcq by Molmil
CRYSTAL STRUCTURE OF VAV AND GRB2 SH3 DOMAINS
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2, VAV PROTO-ONCOGENE
著者Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F.
登録日2000-08-08
公開日2001-08-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001
1GCP
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BU of 1gcp by Molmil
CRYSTAL STRUCTURE OF VAV SH3 DOMAIN
分子名称: VAV PROTO-ONCOGENE
著者Nishida, M, Nagata, K, Hachimori, Y, Ogura, K, Inagaki, F.
登録日2000-08-08
公開日2001-08-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J., 20, 2001
1X25
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BU of 1x25 by Molmil
Crystal Structure of a Member of YjgF Family from Sulfolobus Tokodaii (ST0811)
分子名称: Hypothetical UPF0076 protein ST0811
著者Miyakawa, T, Lee, W.C, Hatano, K, Kato, Y, Sawano, Y, Miyazono, K, Nagata, K, Tanokura, M.
登録日2005-04-20
公開日2006-02-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the YjgF/YER057c/UK114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain 7
Proteins, 62, 2006
2EGD
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BU of 2egd by Molmil
Crystal structure of human S100A13 in the Ca2+-bound state
分子名称: CALCIUM ION, Protein S100-A13
著者Imai, F.L, Nagata, K, Yonezawa, N, Nakano, M, Tanokura, M.
登録日2007-02-28
公開日2008-03-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of human S100A13 in the Ca2+-bound state
Acta Crystallogr.,Sect.F, 64, 2008
3D79
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BU of 3d79 by Molmil
Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3
分子名称: Putative uncharacterized protein PH0734
著者Nishimura, Y, Miyazono, K, Sawano, Y, Makino, T, Nagata, K, Tanokura, M.
登録日2008-05-20
公開日2008-12-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
2DVY
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BU of 2dvy by Molmil
Crystal structure of restriction endonucleases PabI
分子名称: Restriction endonuclease PabI
著者Miyazono, K, Watanabe, M, Kamo, M, Sawasaki, T, Nagata, K, Endo, Y, Tanokura, M, Kobayashi, I.
登録日2006-08-01
公開日2007-05-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Novel protein fold discovered in the PabI family of restriction enzymes
Nucleic Acids Res., 35, 2007
2EB1
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BU of 2eb1 by Molmil
Crystal Structure of the C-Terminal RNase III Domain of Human Dicer
分子名称: Endoribonuclease Dicer, MAGNESIUM ION
著者Takeshita, D, Zenno, S, Lee, W.C, Nagata, K, Saigo, K, Tanokura, M.
登録日2007-02-05
公開日2007-11-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Homodimeric Structure and Double-stranded RNA Cleavage Activity of the C-terminal RNase III Domain of Human Dicer
J.Mol.Biol., 374, 2007
3W6V
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BU of 3w6v by Molmil
Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA
分子名称: AdpA, DNA (5'-D(*AP*GP*GP*TP*TP*GP*GP*CP*GP*GP*GP*TP*TP*CP*AP*C)-3'), DNA (5'-D(*CP*TP*GP*TP*GP*AP*AP*CP*CP*CP*GP*CP*CP*AP*AP*C)-3')
著者Yao, M.D, Ohtsuka, J, Nagata, K, Miyazono, K, Ohnishi, Y, Tanokura, M.
登録日2013-02-22
公開日2013-09-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Complex Structure of the DNA-binding Domain of AdpA, the Global Transcription Factor in Streptomyces griseus, and a Target Duplex DNA Reveals the Structural Basis of Its Tolerant DNA Sequence Specificity
J.Biol.Chem., 288, 2013
3WGB
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BU of 3wgb by Molmil
Crystal structure of aeromonas jandaei L-allo-threonine aldolase
分子名称: GLYCINE, L-allo-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
著者Qin, H.M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Ohtsuka, J, Hou, F, Nagata, K, Shimizu, S, Tanokura, M.
登録日2013-08-03
公開日2014-07-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity.
Acta Crystallogr.,Sect.D, 70, 2014
3AI1
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BU of 3ai1 by Molmil
The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose reveals the structure bases of its catalytic mechanism and high substrate selectivity
分子名称: NADPH-sorbose reductase
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-06
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3APQ
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BU of 3apq by Molmil
Crystal structure of J-Trx1 fragment of ERdj5
分子名称: DnaJ homolog subfamily C member 10
著者Inaba, K, Suzuki, M, Nagata, K.
登録日2010-10-20
公開日2011-04-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol.Cell, 41, 2011
3WGC
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BU of 3wgc by Molmil
Aeromonas jandaei L-allo-threonine aldolase H128Y/S292R double mutant
分子名称: L-allo-threonine aldolase, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE]
著者Qin, H.M, Imai, F.L, Miyakawa, T, Kataoka, M, Okai, M, Ohtsuka, J, Hou, F, Nagata, K, Shimizu, S, Tanokura, M.
登録日2013-08-03
公開日2014-07-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献L-allo-Threonine aldolase with an H128Y/S292R mutation from Aeromonas jandaei DK-39 reveals the structural basis of changes in substrate stereoselectivity.
Acta Crystallogr.,Sect.D, 70, 2014
3APO
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BU of 3apo by Molmil
Crystal structure of full-length ERdj5
分子名称: DnaJ homolog subfamily C member 10
著者Inaba, K, Suzuki, M, Nagata, K.
登録日2010-10-20
公開日2011-04-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol.Cell, 41, 2011
3APS
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BU of 3aps by Molmil
Crystal structure of Trx4 domain of ERdj5
分子名称: DnaJ homolog subfamily C member 10, GLYCEROL, SULFATE ION
著者Inaba, K, Suzuki, M, Nagata, K.
登録日2010-10-20
公開日2011-04-20
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of an ERAD pathway mediated by the ER-resident protein disulfide reductase ERdj5.
Mol.Cell, 41, 2011
3AI3
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BU of 3ai3 by Molmil
The crystal structure of L-Sorbose reductase from Gluconobacter frateurii complexed with NADPH and L-sorbose
分子名称: L-sorbose, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase, ...
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-07
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3AI2
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BU of 3ai2 by Molmil
The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADPH-sorbose reductase
著者Kubota, K, Nagata, K, Okai, M, Miyazono, K, Tanokura, M.
登録日2010-05-07
公開日2011-02-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose
J.Mol.Biol., 407, 2011
3A03
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BU of 3a03 by Molmil
Crystal structure of Hox11L1 homeodomain
分子名称: SODIUM ION, SULFATE ION, T-cell leukemia homeobox protein 2
著者Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
登録日2009-02-28
公開日2010-03-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3A01
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BU of 3a01 by Molmil
Crystal structure of Aristaless and Clawless homeodomains bound to DNA
分子名称: 5'-D(*CP*CP*GP*CP*AP*AP*TP*TP*AP*AP*TP*TP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*AP*AP*TP*TP*AP*AP*TP*TP*GP*CP*GP*G)-3', Homeobox protein aristaless, ...
著者Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
登録日2009-02-28
公開日2010-03-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3A02
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Crystal structure of Aristaless homeodomain
分子名称: CADMIUM ION, CHLORIDE ION, Homeobox protein aristaless
著者Miyazono, K, Nagata, K, Saigo, K, Kojima, T, Tanokura, M.
登録日2009-02-28
公開日2010-03-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless
Embo J., 29, 2010
3WG6
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BU of 3wg6 by Molmil
Crystal structure of conjugated polyketone reductase C1 from Candida parapsilosis complexed with NADPH
分子名称: Conjugated polyketone reductase C1, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Qin, H.-M, Yamamura, A, Miyakawa, T, Maruoka, S, Ohtsuka, J, Nagata, K, Kataoka, M, Shimizu, S, Tanokura, M.
登録日2013-07-28
公開日2013-08-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of conjugated polyketone reductase (CPR-C1) from Candida parapsilosis IFO 0708 complexed with NADPH.
Proteins, 81, 2013

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