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PDB: 17170 results

7QKB
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Crystal structure of human Cathepsin L in complex with covalently bound GC376
Descriptor: CHLORIDE ION, Cathepsin L, DI(HYDROXYETHYL)ETHER, ...
Authors:Reinke, P.Y.A, Falke, S, Lieske, J, Ewert, W, Loboda, J, Rahmani Mashhour, A, Hauser, M, Karnicar, K, Usenik, A, Lindic, N, Lach, M, Boehler, H, Beck, T, Cox, R, Chapman, H.N, Hinrichs, W, Turk, D, Guenther, S, Meents, A.
Deposit date:2021-12-17
Release date:2022-12-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Calpeptin is a potent cathepsin inhibitor and drug candidate for SARS-CoV-2 infections.
Commun Biol, 6, 2023
2PWG
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Crystal Structure of the Trehalulose Synthase MutB From Pseudomonas Mesoacidophila MX-45 Complexed to the Inhibitor Castanospermine
Descriptor: CALCIUM ION, CASTANOSPERMINE, Sucrose isomerase
Authors:Ravaud, S, Robert, X, Haser, R, Aghajari, N.
Deposit date:2007-05-11
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Trehalulose synthase native and carbohydrate complexed structures provide insights into sucrose isomerization.
J.Biol.Chem., 61, 2007
9C5S
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Disulfide-linked, antiparallel p53-derived peptide dimer (CV1)
Descriptor: Cellular tumor antigen p53, SULFATE ION
Authors:Vithanage, N, Kreitler, D.K, DiGiorno, M.C, Victorio, C.G, Sawyer, N, Outlaw, V.K.
Deposit date:2024-06-06
Release date:2024-06-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.01 Å)
Cite:Structural Characterization of Disulfide-Linked p53-Derived Peptide Dimers.
Res Sq, 2024
7QKA
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Crystal structure of SARS-CoV-2 Main Protease in complex with covalently bound GC376
Descriptor: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, N~2~-[(benzyloxy)carbonyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide
Authors:Reinke, P.Y.A, Falke, S, Lieske, J, Ewert, W, Loboda, J, Rahmani Mashhour, A, Hauser, M, Karnicar, K, Usenik, A, Lindic, N, Lach, M, Boehler, H, Beck, T, Cox, R, Chapman, H.N, Hinrichs, W, Turk, D, Guenther, S, Meents, A.
Deposit date:2021-12-17
Release date:2022-12-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Calpeptin is a potent cathepsin inhibitor and drug candidate for SARS-CoV-2 infections.
Commun Biol, 6, 2023
1QG0
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WILD-TYPE PEA FNR
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PROTEIN (FERREDOXIN:NADP+ REDUCTASE)
Authors:Deng, Z, Aliverti, A, Zanetti, G, Arakaki, A.K, Ottado, J, Orellano, E.G, Calcaterra, N.B, Ceccarelli, E.A, Carrillo, N, Karplus, P.A.
Deposit date:1999-04-18
Release date:1999-04-27
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A productive NADP+ binding mode of ferredoxin-NADP+ reductase revealed by protein engineering and crystallographic studies.
Nat.Struct.Biol., 6, 1999
1QGA
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PEA FNR Y308W MUTANT IN COMPLEX WITH NADP+
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTEIN (FERREDOXIN:NADP+ REDUCTASE), ...
Authors:Deng, Z, Aliverti, A, Zanetti, G, Arakaki, A.K, Ottado, J, Orellano, E.G, Calcaterra, N.B, Ceccarelli, E.A, Carrillo, N, Karplus, P.A.
Deposit date:1999-04-18
Release date:1999-04-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:A productive NADP+ binding mode of ferredoxin-NADP+ reductase revealed by protein engineering and crystallographic studies.
Nat.Struct.Biol., 6, 1999
1QKF
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BU of 1qkf by Molmil
SOLUTION STRUCTURE OF THE RIBOSOMAL PROTEIN S19 FROM THERMUS THERMOPHILUS
Descriptor: 30S RIBOSOMAL PROTEIN S19
Authors:Helgstrand, M, Rak, A.V, Allard, P, Davydova, N, Garber, M.B, Hard, T.
Deposit date:1999-07-19
Release date:1999-07-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the ribosomal protein S19 from Thermus thermophilus.
J. Mol. Biol., 292, 1999
1QOJ
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Crystal Structure of E.coli UvrB C-terminal domain, and a model for UvrB-UvrC interaction.
Descriptor: UVRB
Authors:Sohi, M, Alexandrovich, A, Moolenaar, G, Visse, R, Goosen, N, Vernede, X, Fontecilla-Camps, J, Champness, J, Sanderson, M.R.
Deposit date:1999-11-10
Release date:2000-11-10
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of E.Coli Uvrb C-Terminal Domain, and a Model for Uvrb-Uvrc Interaction
FEBS Lett., 465, 2000
2PUM
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BU of 2pum by Molmil
Crystal structure of bovine lactoperoxidase complex with catechol and iodide at 2.7 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CATECHOL, ...
Authors:Singh, A.K, Singh, N, Sharma, S, Kaur, P, Singh, T.P.
Deposit date:2007-05-09
Release date:2007-05-22
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of bovine lactoperoxidase complex with catechol and iodide at 2.7 A resolution
To be Published
2PUS
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Unprecedented activation mechanism of a non-canonical RNA-dependent RNA polymerase
Descriptor: IBDV VP1 RNA-dependant RNA polymerase
Authors:Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N.
Deposit date:2007-05-09
Release date:2007-11-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Activation mechanism of a noncanonical RNA-dependent RNA polymerase.
Proc.Natl.Acad.Sci.Usa, 104, 2007
1QVV
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BU of 1qvv by Molmil
Crystal structure of the S. cerevisiae YDR533c protein
Descriptor: YDR533c protein
Authors:Graille, M, Leulliot, N, Quevillon-Cheruel, S, van Tilbeurgh, H.
Deposit date:2003-08-29
Release date:2004-03-30
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of the YDR533c S. cerevisiae protein, a class II member of the Hsp31 family
STRUCTURE, 12, 2004
1QOX
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Beta-glucosidase from Bacillus circulans sp. alkalophilus
Descriptor: BETA-GLUCOSIDASE
Authors:Hakulinen, N, Rouvinen, J.
Deposit date:1999-11-24
Release date:2000-02-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Crystal Structure of Beta-Glucosidase from Bacillus Circulans Sp. Alkalophilus: Ability to Form Long Polymeric Assemblies
J.Struct.Biol., 129, 2000
2PWE
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BU of 2pwe by Molmil
Crystal structure of the MutB E254Q mutant in complex with the substrate sucrose
Descriptor: CALCIUM ION, Sucrose isomerase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
Authors:Ravaud, S, Robert, X, Haser, R, Aghajari, N.
Deposit date:2007-05-11
Release date:2007-06-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trehalulose synthase native and carbohydrate complexed structures provide insights into sucrose isomerization.
J.Biol.Chem., 282, 2007
2PWA
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BU of 2pwa by Molmil
Crystal Structure of the complex of Proteinase K with Alanine Boronic acid at 0.83A resolution
Descriptor: ALANINE BORONIC ACID, CALCIUM ION, NITRATE ION, ...
Authors:Jain, R, Singh, N, Perbandt, M, Betzel, C, Sharma, S, Kaur, P, Srinivasan, A, Singh, T.P.
Deposit date:2007-05-11
Release date:2007-05-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:Crystal structure of the complex of Proteinase K with Alanine Boronic Acid at 0.83A Resolution
To be Published
2PY4
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BU of 2py4 by Molmil
Full length structure of the Mycobacterium tuberculosis dUTPase complexed with magnesium and alpha,beta-imido-dUTP.
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Deoxyuridine 5'-triphosphate nucleotidohydrolase, ...
Authors:Barabas, O, Nagy, N, Takacs, E, Vertessy, B.G.
Deposit date:2007-05-15
Release date:2007-05-22
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Active site of mycobacterial dUTPase: structural characteristics and a built-in sensor.
Biochem.Biophys.Res.Commun., 373, 2008
2PYC
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BU of 2pyc by Molmil
Crystal structure of a monomeric phospholipase A2 from Russell's viper at 1.5A resolution
Descriptor: ACETATE ION, ACETONITRILE, Phospholipase A2 VRV-PL-VIIIa, ...
Authors:Kumar, S, Singh, N, Sharma, S, Kaur, P, Betzel, C, Singh, T.P.
Deposit date:2007-05-16
Release date:2007-05-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a monomeric phospholipase A2 from Russell's viper at 1.5A resolution
To be Published
1Q6V
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BU of 1q6v by Molmil
First crystal structure of a C49 monomer PLA2 from the venom of Daboia russelli pulchella at 1.8 A resolution
Descriptor: Phospholipase A2 VRV-PL-VIIIa, SULFATE ION
Authors:Singh, N, Pal, A, Jabeen, T, Sharma, S, Singh, T.P.
Deposit date:2003-08-14
Release date:2004-05-04
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:First crystal structure of a C49 PLA2 from the venom of Daboia russelli pulchella at 1.8A resolution
To be Published
1QDD
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BU of 1qdd by Molmil
CRYSTAL STRUCTURE OF HUMAN LITHOSTATHINE TO 1.3 A RESOLUTION
Descriptor: LITHOSTATHINE, beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Gerbaud, V, Pignol, D, Loret, E, Bertrand, J.A, Berland, Y, Fontecilla-Camps, J.C, Canselier, J.P, Gabas, N, Verdier, J.M.
Deposit date:1999-05-20
Release date:1999-05-28
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Mechanism of calcite crystal growth inhibition by the N-terminal undecapeptide of lithostathine.
J.Biol.Chem., 275, 2000
2Q6A
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BU of 2q6a by Molmil
Crystal Structure of Nak channel D66E mutant
Descriptor: CALCIUM ION, Potassium channel protein, SODIUM ION
Authors:Alam, A, Shi, N, Jiang, Y.
Deposit date:2007-06-04
Release date:2007-10-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insight into Ca2+ specificity in tetrameric cation channels.
Proc.Natl.Acad.Sci.Usa, 104, 2007
1QVP
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BU of 1qvp by Molmil
C terminal SH3-like domain from Diphtheria toxin Repressor residues 144-226.
Descriptor: Diphtheria toxin repressor
Authors:Wylie, G.P, Rangachari, V, Bienkiewicz, E.A, Marin, V, Bhattacharya, N, Love, J.F, Murphy, J.R, Logan, T.M.
Deposit date:2003-08-28
Release date:2004-11-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Prolylpeptide binding by the prokaryotic SH3-like domain of the diphtheria toxin repressor: a regulatory switch.
Biochemistry, 44, 2005
2PWH
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BU of 2pwh by Molmil
Crystal structure of the trehalulose synthase MutB from Pseudomonas mesoacidophila MX-45
Descriptor: CALCIUM ION, Sucrose isomerase
Authors:Ravaud, S, Robert, X, Haser, R, Aghajari, N.
Deposit date:2007-05-11
Release date:2007-06-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trehalulose synthase native and carbohydrate complexed structures provide insights into sucrose isomerization.
J.Biol.Chem., 61, 2007
8CRF
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BU of 8crf by Molmil
Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 5E11 refined against anomalous diffraction data
Descriptor: Host translation inhibitor nsp1, ~{N}-methyl-1-(4-thiophen-2-ylphenyl)methanamine
Authors:Ma, S, Mykhaylyk, V, Pinotsis, N, Bowler, M.W, Kozielski, F.
Deposit date:2023-03-08
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:High-Confidence Placement of Fragments into Electron Density Using Anomalous Diffraction-A Case Study Using Hits Targeting SARS-CoV-2 Non-Structural Protein 1.
Int J Mol Sci, 24, 2023
8CRK
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BU of 8crk by Molmil
Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 7H2 refined against anomalous diffraction data
Descriptor: (1~{R})-1-(4-chlorophenyl)ethanamine, Host translation inhibitor nsp1
Authors:Ma, S, Mikhailik, V, Pinotsis, N, Bowler, M.W, Kozielski, F.
Deposit date:2023-03-08
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-Confidence Placement of Fragments into Electron Density Using Anomalous Diffraction-A Case Study Using Hits Targeting SARS-CoV-2 Non-Structural Protein 1.
Int J Mol Sci, 24, 2023
8CRM
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BU of 8crm by Molmil
Crystal structure of N-terminal SARS-CoV-2 nsp1 in complex with fragment hit 11C6 refined against anomalous diffraction data
Descriptor: 1-[2-(3-chlorophenyl)-1,3-thiazol-4-yl]-~{N}-methyl-methanamine, Host translation inhibitor nsp1
Authors:Ma, S, Mikhailik, V, Pinotsis, N, Bowler, M.W, Kozielski, F.
Deposit date:2023-03-08
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:High-Confidence Placement of Fragments into Electron Density Using Anomalous Diffraction-A Case Study Using Hits Targeting SARS-CoV-2 Non-Structural Protein 1.
Int J Mol Sci, 24, 2023
2Q2W
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BU of 2q2w by Molmil
Structure of D-3-Hydroxybutyrate Dehydrogenase from Pseudomonas putida
Descriptor: Beta-D-hydroxybutyrate dehydrogenase
Authors:Paithankar, K.S, Feller, C, Kuettner, E.B, Keim, A, Grunow, M, Strater, N.
Deposit date:2007-05-29
Release date:2007-10-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Cosubstrate-induced dynamics of D-3-hydroxybutyrate dehydrogenase from Pseudomonas putida.
Febs J., 274, 2007

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