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PDB: 137 件
5Y7O
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Crystal structure of folding sensor region of UGGT from Thermomyces dupontii
分子名称: UGGT
著者Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K.
登録日2017-08-17
公開日2017-09-27
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
5H71
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Structure of alginate-binding protein AlgQ2 in complex with an alginate trisaccharide
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgQ2, CALCIUM ION, ...
著者Uenishi, K, Kaneko, A, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-11-15
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.549 Å)
主引用文献A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate
J. Biol. Chem., 292, 2017
5H6U
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Structure of alginate-binding protein AlgQ2 in complex with an alginate pentasaccharide
分子名称: AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
著者Uenishi, K, Kaneko, A, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-11-15
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.006 Å)
主引用文献A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate
J. Biol. Chem., 292, 2017
1Y3I
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Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex
分子名称: GLYCEROL, Inorganic polyphosphate/ATP-NAD kinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, Kawai, S, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-25
公開日2005-01-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
Biochem.Biophys.Res.Commun., 327, 2005
5Y7F
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Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, UGGT, ...
著者Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K.
登録日2017-08-17
公開日2017-09-27
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
1Y3P
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Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide
分子名称: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
著者Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-26
公開日2005-04-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3N
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Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide
分子名称: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid
著者Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-26
公開日2005-04-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
1Y3H
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Crystal Structure of Inorganic Polyphosphate/ATP-NAD kinase from Mycobacterium tuberculosis
分子名称: Inorganic polyphosphate/ATP-NAD kinase
著者Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, kawai, S, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-24
公開日2005-01-18
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
BIOCHEM.BIOPHYS.RES.COMMUN., 327, 2005
1Y3Q
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Structure of AlgQ1, alginate-binding protein
分子名称: AlgQ1, CALCIUM ION
著者Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-26
公開日2005-04-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,)
Biochemistry, 44, 2005
2AT9
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STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY
分子名称: 3-[[3-METHYLPHOSPHONO-GLYCEROLYL]PHOSPHONYL]-[1,2-DI[2,6,10,14-TETRAMETHYL-HEXADECAN-16-YL]GLYCEROL, BACTERIORHODOPSIN, RETINAL
著者Mitsuoka, K, Hirai, T, Murata, K, Miyazawa, A, Kidera, A, Kimura, Y, Fujiyoshi, Y.
登録日1998-12-17
公開日1999-04-27
最終更新日2011-07-13
実験手法ELECTRON CRYSTALLOGRAPHY (3 Å)
主引用文献The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution.
J.Mol.Biol., 286, 1999
5GQP
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Thaumatin Structure at pH 8.0, orthorhombic type1
分子名称: Thaumatin I
著者Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B.
登録日2016-08-08
公開日2017-08-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.296 Å)
主引用文献Thaumatin Structure at pH 8.0, orthorhombic type1
To Be Published
5GX8
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Crystal structure of solute-binding protein related to glycosaminoglycans
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.778 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5XS8
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Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1
著者Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W.
登録日2017-06-12
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.952 Å)
主引用文献Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017
4XTC
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Crystal structure of bacterial alginate ABC transporter in complex with alginate pentasaccharide-bound periplasmic protein
分子名称: AlgM1, AlgM2, AlgQ2, ...
著者Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-01-23
公開日2016-03-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
5GX7
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Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-6 position of GalNAc
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.991 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5GUB
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Crystal structure of solute-binding protein complexed with sulfate group-free unsaturated chondroitin disaccharide
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-08-26
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
5GX6
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Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-4 position of GalNAc
分子名称: 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, CALCIUM ION, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
4Z9Y
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Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Pectobacterium carotovorum
分子名称: 2-deoxy-D-gluconate 3-dehydrogenase, SULFATE ION
著者Takase, R, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-04-13
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84, 2016
7FG2
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Minor cryo-EM structure of S protein trimer of SARS-CoV2 with K-874A VHH, composite map
分子名称: K-874A VHH, Spike glycoprotein
著者Song, C, Murata, K, Katayama, K.
登録日2021-07-25
公開日2021-09-29
最終更新日2022-03-23
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model.
Plos Pathog., 17, 2021
7FG3
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Major cryo-EM structure of S protein trimer of SARS-CoV2 with K-874, composite map
分子名称: K-874A VHH, Spike glycoprotein
著者Song, C, Katayama, K, Murata, K.
登録日2021-07-25
公開日2021-09-29
最終更新日2022-03-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Nasal delivery of single-domain antibody improves symptoms of SARS-CoV-2 infection in an animal model.
Plos Pathog., 17, 2021
5Z6B
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Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.582 Å)
主引用文献Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
5Z6C
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Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
分子名称: Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
To Be Published
1VAV
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Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution
分子名称: Alginate lyase PA1167
著者Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B.
登録日2004-02-19
公開日2004-05-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold.
J.Biol.Chem., 279, 2004
1VD5
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Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ...
著者Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-03-18
公開日2004-07-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
J.Biol.Chem., 279, 2004
1X1J
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Crystal Structure of Xanthan Lyase (N194A) with a Substrate.
分子名称: (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase
著者Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-04-04
公開日2005-07-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005

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