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PDB: 159 results
7K01
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BU of 7k01 by Molmil
Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex
Descriptor: DNA repair helicase RAD25, DNA repair helicase RAD3, General transcription and DNA repair factor IIH subunit SSL1, ...
Authors:van Eeuwen, T, Min, J.H, Murakami, K.
Deposit date:2020-09-02
Release date:2021-07-28
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair.
Nat Commun, 12, 2021
7K04
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BU of 7k04 by Molmil
Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening
Descriptor: CALCIUM ION, DNA repair helicase RAD25, DNA repair helicase RAD3, ...
Authors:van Eeuwen, T, Min, J.H, Murakami, K.
Deposit date:2020-09-03
Release date:2021-07-28
Method:ELECTRON MICROSCOPY (9.25 Å)
Cite:Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair.
Nat Commun, 12, 2021
3Q23
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BU of 3q23 by Molmil
X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GMPCPP and Manganese: sustrate complex II
Descriptor: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), MANGANESE (II) ION, ...
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2010-12-19
Release date:2011-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides.
Proc.Natl.Acad.Sci.USA, 108, 2011
3Q24
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BU of 3q24 by Molmil
X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with pppGpG and pyrophosphate: product complex
Descriptor: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2010-12-19
Release date:2011-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides.
Proc.Natl.Acad.Sci.USA, 108, 2011
3Q22
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BU of 3q22 by Molmil
X-ray crystal structure of the N4 mini-VRNAP and P2_7a promoter transcription initiation complex with GTP and Magnesium: substrate complex I
Descriptor: DIHYDROGENPHOSPHATE ION, DNA (5'-D(*TP*GP*CP*CP*TP*CP*CP*CP*AP*GP*GP*CP*AP*TP*CP*CP*AP*AP*AP*AP*GP*AP*AP*GP*CP*GP*GP*AP*GP*CP*TP*TP*CP*TP*TP*C)-3'), GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2010-12-19
Release date:2011-02-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides.
Proc.Natl.Acad.Sci.USA, 108, 2011
3C46
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BU of 3c46 by Molmil
X-ray crystal structure of the N4 mini-vRNAP P2_7a promoter complex soaked with MgCl2
Descriptor: DIHYDROGENPHOSPHATE ION, P2_7a Promoter DNA, Virion RNA polymerase
Authors:Gleghorn, M.L, Murakami, K.S.
Deposit date:2008-01-29
Release date:2008-12-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for DNA-hairpin promoter recognition by the bacteriophage N4 virion RNA polymerase.
Mol.Cell, 32, 2008
7JTH
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BU of 7jth by Molmil
Cryo-EM structure of unliganded octameric prenyltransferase domain of Phomopsis amygdali fusicoccadiene synthase
Descriptor: Fusicoccadiene synthase
Authors:Faylo, J.L, van Eeuwen, T, Murakami, K, Christianson, D.W.
Deposit date:2020-08-17
Release date:2021-04-28
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structural insight on assembly-line catalysis in terpene biosynthesis.
Nat Commun, 12, 2021
7LBN
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BU of 7lbn by Molmil
X-ray crystal structure of the SARS-CoV-2 main protease with Calpain I Inhibitor
Descriptor: 3C-like proteinase, Calpain I Inhibitor, SULFATE ION
Authors:Narwal, M, Murakami, K.S.
Deposit date:2021-01-08
Release date:2021-02-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Identification of SARS-CoV-2 inhibitors targeting Mpro and PLpro using in-cell-protease assay.
Commun Biol, 5, 2022
3BNK
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BU of 3bnk by Molmil
X-ray crystal structure of Flavoredoxin from Methanosarcina acetivorans
Descriptor: FLAVIN MONONUCLEOTIDE, Flavoredoxin
Authors:Suharti, S, Murakami, K.S, Ferry, J.G.
Deposit date:2007-12-14
Release date:2008-10-28
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and biochemical characterization of flavoredoxin from the archaeon Methanosarcina acetivorans
Biochemistry, 47, 2008

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