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PDB: 109 results

3K1D
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Crystal structure of glycogen branching enzyme synonym: 1,4-alpha-D-glucan:1,4-alpha-D-GLUCAN 6-glucosyl-transferase from mycobacterium tuberculosis H37RV
Descriptor: 1,4-alpha-glucan-branching enzyme
Authors:Pal, K, Kumar, S, Swaminathan, K.
Deposit date:2009-09-27
Release date:2010-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystal structure of full-length Mycobacterium tuberculosis H37Rv glycogen branching enzyme: insights of N-terminal beta-sandwich in substrate specificity and enzymatic activity
J.Biol.Chem., 285, 2010
3MFK
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BU of 3mfk by Molmil
Ets1 complex with stromelysin-1 promoter DNA
Descriptor: Protein C-ets-1, stromelysin-1 promoter DNA
Authors:Babayeva, N.D, Mino, K, Tahirov, T.H.
Deposit date:2010-04-02
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of Ets1 cooperative binding to palindromic sequences on stromelysin-1 promoter DNA.
Cell Cycle, 9, 2010
7VNX
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BU of 7vnx by Molmil
Crystal structure of TkArkI
Descriptor: GUANOSINE, TkArkI
Authors:Yamashita, S, Minowa, K, Ohira, T, Suzuki, T, Tomita, K.
Deposit date:2021-10-12
Release date:2022-05-04
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Reversible RNA phosphorylation stabilizes tRNA for cellular thermotolerance.
Nature, 605, 2022
7VTJ
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BU of 7vtj by Molmil
The cross-reaction complex structure with VQIIYK peptide and tau antibody's Fab domain.
Descriptor: Heavy chain of Fab, Light chain of Fab, VQIIYK peptide
Authors:Tsuchida, T, Fukuhara, N, Tsuchiya, T, Miyamoto, K, In, Y, Minoura, K, Taniguchi, Y, Ishida, T, Tomoo, K.
Deposit date:2021-10-29
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:The cross-reaction complex structure with VQIIYK peptide and tau antibody's Fab domain.
To Be Published
3FHV
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BU of 3fhv by Molmil
Structural basis of Salmonella typhi type IVb PilS and cystic fibrosis transmembrane conductance regulator (CFTR) interaction
Descriptor: Prepilin, cftr peptide
Authors:Balakrishna, A.M, Swaminathan, K.
Deposit date:2008-12-10
Release date:2009-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of typhoid: Salmonella typhi type IVb pilin (PilS) and cystic fibrosis transmembrane conductance regulator interaction.
Proteins, 77, 2009
3FHU
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Crystal structure of type IV b pilin from Salmonella typhi
Descriptor: Prepilin
Authors:Balakrishna, A.M, Swaminathan, K.
Deposit date:2008-12-10
Release date:2009-10-20
Last modified:2020-09-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis of typhoid: Salmonella typhi type IVb pilin (PilS) and cystic fibrosis transmembrane conductance regulator interaction.
Proteins, 77, 2009
5LV6
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BU of 5lv6 by Molmil
N-terminal motif dimerization of EGFR transmembrane domain in bicellar environment
Descriptor: Epidermal growth factor receptor
Authors:Bragin, P, Bocharov, E, Mineev, K, Bocharova, O, Arseniev, A.
Deposit date:2016-09-12
Release date:2017-04-05
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The Conformation of the Epidermal Growth Factor Receptor Transmembrane Domain Dimer Dynamically Adapts to the Local Membrane Environment.
Biochemistry, 56, 2017
5WVX
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BU of 5wvx by Molmil
Crystal Structure of bifunctional Kunitz type Trypsin /amylase inhibitor (AMTIN) from the tubers of Alocasia macrorrhiza
Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, CITRIC ACID, Trypsin/chymotrypsin inhibitor
Authors:Palayam, M, Radhakrishnan, M, Lakshminarayanan, K, Balu, K.E, Ganapathy, J, Krishnasamy, G.
Deposit date:2016-12-29
Release date:2018-06-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.003 Å)
Cite:Structural insights into a multifunctional inhibitor, 'AMTIN' from tubers of Alocasia macrorrhizos and its possible role in dengue protease (NS2B-NS3) inhibition.
Int. J. Biol. Macromol., 113, 2018
7W7R
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High resolution structure of a fish aquaporin reveals a novel extracellular fold.
Descriptor: Aquaporin 1
Authors:Zeng, J, Schmitz, F, Isaksson, S, Glas, J, Arbab, O, Andersson, M, Sundell, K, Eriksson, L, Swaminathan, K, Tornroth-Horsefield, S, Hedfalk, K.
Deposit date:2021-12-06
Release date:2022-10-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.46 Å)
Cite:High-resolution structure of a fish aquaporin reveals a novel extracellular fold.
Life Sci Alliance, 5, 2022
7W7S
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BU of 7w7s by Molmil
High resolution structure of a fish aquaporin reveals a novel extracellular fold.
Descriptor: Aquaporin 1
Authors:Zeng, J, Schmitz, F, Isaksson, S, Glas, J, Arbab, O, Andersson, M, Sundell, K, Eriksson, L, Swaminathan, K, Tornroth-Horsefield, S, Hedfalk, K.
Deposit date:2021-12-06
Release date:2022-10-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution structure of a fish aquaporin reveals a novel extracellular fold.
Life Sci Alliance, 5, 2022
5ZTZ
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BU of 5ztz by Molmil
Proteobacterial origin of protein arginine methylation and regulation of Complex I assembly by MidA
Descriptor: Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
Authors:Arold, S.T, Swaminathan, K, Hameed, U.F.S.
Deposit date:2018-05-05
Release date:2018-08-22
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA.
Cell Rep, 24, 2018
5ZU0
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BU of 5zu0 by Molmil
Proteobacterial origin of protein arginine methylation and regulation of Complex I assembly by MidA
Descriptor: Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Arold, S.T, Swaminathan, K, Hameed, U.F.S.
Deposit date:2018-05-05
Release date:2018-08-22
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA.
Cell Rep, 24, 2018
5ZZW
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BU of 5zzw by Molmil
Proteobacterial origin of protein arginine methylation and regulation of Complex I assembly by MidA
Descriptor: Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Arold, S.T, Swaminathan, K, Hameed, U.F.S.
Deposit date:2018-06-04
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA.
Cell Rep, 24, 2018
4XZX
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BU of 4xzx by Molmil
Shigella flexneri effector OspI C62S mutant
Descriptor: ACETATE ION, ORF169b
Authors:Nishide, A, Takagi, K, Minsoo, K, Sasakawa, C, Mizushima, T.
Deposit date:2015-02-05
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:New insights into the active site structure of Shigella effecter OspI
To Be Published
7AV6
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BU of 7av6 by Molmil
FAST in a domain-swapped dimer form
Descriptor: FORMIC ACID, Photoactive yellow protein
Authors:Bukhdruker, S, Remeeva, A, Ruchkin, D, Gorbachev, D, Povarova, N, Mineev, K, Goncharuk, S, Baranov, M, Mishin, A, Borshchevskiy, V.
Deposit date:2020-11-04
Release date:2021-06-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids.
Chem Sci, 12, 2021
4EXO
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BU of 4exo by Molmil
Revised, rerefined crystal structure of PDB entry 2QHK, methyl accepting chemotaxis protein
Descriptor: Methyl-accepting chemotaxis protein, PYRUVIC ACID
Authors:Sweeney, E.G, Henderson, J.N, Goers, J, Wreden, C, Hicks, K.G, Foster, J.K, Parthasarathy, R, Remington, S.J, Guillemin, K.
Deposit date:2012-04-30
Release date:2012-05-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and Proposed Mechanism for the pH-Sensing Helicobacter pylori Chemoreceptor TlpB.
Structure, 20, 2012
5GIM
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BU of 5gim by Molmil
Crystal structure of thrombin-avathrin complex
Descriptor: C-terminal peptide from Putative uncharacterized protein avahiru, N-terminal peptide from Putative uncharacterized protein avahiru, Thrombin light chain, ...
Authors:Kini, R.M, Koh, C.Y, Iyer, J.K, Swaminathan, K.
Deposit date:2016-06-24
Release date:2017-05-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Avathrin: a novel thrombin inhibitor derived from a multicopy precursor in the salivary glands of the ixodid tick, Amblyomma variegatum.
FASEB J., 31, 2017
8UZW
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BU of 8uzw by Molmil
Selenocysteine synthase- SelA
Descriptor: L-seryl-tRNA(Sec) selenium transferase
Authors:Balasco Serrao, V.H, Minari, K, Pereira, H.M, Thiemann, O.H.
Deposit date:2023-11-16
Release date:2024-04-24
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Bacterial selenocysteine synthase structure revealed by single-particle cryoEM.
Curr Res Struct Biol, 7, 2024
4XNN
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BU of 4xnn by Molmil
Crystal Structure of a GH7 Family Cellobiohydrolase from Daphnia pulex
Descriptor: Cellobiohydrolase CHBI, GLYCEROL
Authors:Ebrahim, A, Hobdey, S.E, Podkaminer, K, Taylor II, L.E, Beckham, G.T, Decker, S.R, Himmel, M.E, Cragg, S.M, McGeehan, J.E.
Deposit date:2015-01-15
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Characterization of a GH7 Family Cellobiohydrolase from Daphnia pulex
To Be Published
3PDM
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BU of 3pdm by Molmil
Hibiscus Latent Singapore virus
Descriptor: Coat protein, RNA (5'-R(P*GP*AP*A)-3')
Authors:Tewary, S.K, Wong, S.M, Swaminathan, K.
Deposit date:2010-10-22
Release date:2011-01-12
Last modified:2024-03-20
Method:FIBER DIFFRACTION (3.5 Å)
Cite:Structure of Hibiscus latent Singapore virus by fiber diffraction: A non-conserved His122 contributes to coat protein stability
J.Mol.Biol., 2010
3OQT
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BU of 3oqt by Molmil
Crystal structure of Rv1498A protein from mycobacterium tuberculosis
Descriptor: CHLORIDE ION, Rv1498A PROTEIN, SODIUM ION
Authors:Liu, F, Xiong, J, Kumar, S, Yang, C, Li, S, Ge, S, Xia, N, Swaminathan, K.
Deposit date:2010-09-04
Release date:2011-07-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Structural and biophysical characterization of Mycobacterium tuberculosis dodecin Rv1498A.
J.Struct.Biol., 175, 2011
3RFY
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BU of 3rfy by Molmil
Crystal structure of arabidopsis thaliana cyclophilin 38 (ATCYP38)
Descriptor: Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic
Authors:Vasudevan, D, Swaminathan, K.
Deposit date:2011-04-07
Release date:2012-06-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Crystal structure of Arabidopsis cyclophilin38 reveals a previously uncharacterized immunophilin fold and a possible autoinhibitory mechanism.
Plant Cell, 24, 2012
5DTO
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BU of 5dto by Molmil
Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAH
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, ACETATE ION, MAGNESIUM ION, ...
Authors:Zhao, Y, Soh, T.S, Lim, S.P, Chung, K.Y, Swaminathan, K, Vasudevan, S.G, Shi, P.-Y, Lescar, J, Luo, D.
Deposit date:2015-09-18
Release date:2015-11-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Molecular basis for specific viral RNA recognition and 2'-O-ribose methylation by the dengue virus nonstructural protein 5 (NS5)
Proc.Natl.Acad.Sci.USA, 112, 2015
1WKV
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BU of 1wkv by Molmil
Crystal structure of O-phosphoserine sulfhydrylase
Descriptor: ACETATE ION, PYRIDOXAL-5'-PHOSPHATE, cysteine synthase
Authors:Oda, Y, Mino, K, Ishikawa, K, Ataka, M.
Deposit date:2004-06-09
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Three-dimensional Structure of a New Enzyme, O-Phosphoserine Sulfhydrylase, involved in l-Cysteine Biosynthesis by a Hyperthermophilic Archaeon, Aeropyrum pernix K1, at 2.0A Resolution
J.Mol.Biol., 351, 2005
2MJO
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BU of 2mjo by Molmil
NMR structure of p75 transmembrane domain C257A mutant in DPC micelles
Descriptor: Tumor necrosis factor receptor superfamily member 16
Authors:Nadezhdin, K, Arseniev, A, Goncharuk, S, Mineev, K.
Deposit date:2014-01-15
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Basis of p75 Transmembrane Domain Dimerization.
J. Biol. Chem., 291, 2016

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