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PDB: 323 件
1J1S
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BU of 1j1s by Molmil
Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral Protein S, FORMYCIN-5'-MONOPHOSPHATE
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
6JBO
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Crystal structure of EfeO-like protein Algp7 containing samarium ion
分子名称: 1,2-ETHANEDIOL, Alginate-binding protein, CITRIC ACID
著者Okumura, K, Takase, R, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2019-01-26
公開日2020-01-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
1IPK
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BU of 1ipk by Molmil
CRYSTAL STRUCTURES OF RECOMBINANT AND NATIVE SOYBEAN BETA-CONGLYCININ BETA HOMOTRIMERS
分子名称: BETA-CONGLYCININ, BETA CHAIN
著者Maruyama, N, Adachi, M, Takahashi, K, Yagasaki, K, Kohno, M, Takenaka, Y, Okuda, E, Nakagawa, S, Mikami, B, Utsumi, S.
登録日2001-05-16
公開日2002-05-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structures of recombinant and native soybean beta-conglycinin beta homotrimers.
Eur.J.Biochem., 268, 2001
3WIW
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BU of 3wiw by Molmil
Crystal structure of unsaturated glucuronyl hydrolase specific for heparin
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycosyl hydrolase family 88
著者Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-26
公開日2014-01-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin.
J.Biol.Chem., 289, 2014
1L6G
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Alanine racemase bound with N-(5'-phosphopyridoxyl)-D-alanine
分子名称: N-(5'-PHOSPHOPYRIDOXYL)-D-ALANINE, alanine racemase
著者Watanabe, A, Yoshimura, T, Mikami, B, Hayashi, H, Kagamiyama, H, Esaki, N.
登録日2002-03-10
公開日2002-06-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.
J.Biol.Chem., 277, 2002
1UIK
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BU of 1uik by Molmil
Crystal structure of soybean beta-conglycinin alpha prime homotrimer
分子名称: MAGNESIUM ION, alpha prime subunit of beta-conglycinin
著者Maruyama, Y, Maruyama, N, Mikami, B, Utsumi, S.
登録日2003-07-16
公開日2004-07-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the core region of the soybean beta-conglycinin alpha' subunit.
Acta Crystallogr.,Sect.D, 60, 2004
1V9Y
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Crystal Structure of the heme PAS sensor domain of Ec DOS (ferric form)
分子名称: Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE
著者Kurokawa, H, Lee, D.S, Watanabe, M, Sagami, I, Mikami, B, Raman, C.S, Shimizu, T.
登録日2004-02-04
公開日2004-05-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.32 Å)
主引用文献A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor.
J.Biol.Chem., 279, 2004
1L6F
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BU of 1l6f by Molmil
Alanine racemase bound with N-(5'-phosphopyridoxyl)-L-alanine
分子名称: ALANYL-PYRIDOXAL-5'-PHOSPHATE, alanine racemase
著者Watanabe, A, Yoshimura, T, Mikami, B, Hayashi, H, Kagamiyama, H, Esaki, N.
登録日2002-03-09
公開日2002-06-05
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Reaction mechanism of alanine racemase from Bacillus stearothermophilus: x-ray crystallographic studies of the enzyme bound with N-(5'-phosphopyridoxyl)alanine.
J.Biol.Chem., 277, 2002
1V9Z
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Crystal Structure of the heme PAS sensor domain of Ec DOS (Ferrous Form)
分子名称: Heme pas sensor protein, PROTOPORPHYRIN IX CONTAINING FE
著者Kurokawa, H, Lee, D.S, Watanabe, M, Sagami, I, Mikami, B, Raman, C.S, Shimizu, T.
登録日2004-02-04
公開日2004-05-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A redox-controlled molecular switch revealed by the crystal structure of a bacterial heme PAS sensor.
J.Biol.Chem., 279, 2004
1J1Q
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BU of 1j1q by Molmil
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral protein S
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1LGY
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BU of 1lgy by Molmil
LIPASE II FROM RHIZOPUS NIVEUS
分子名称: TRIACYLGLYCEROL LIPASE
著者Kohno, M, Funatsu, J, Mikami, B, Kugimiya, W, Matsuo, T, Morita, Y.
登録日1996-05-23
公開日1996-12-23
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The crystal structure of lipase II from Rhizopus niveus at 2.2 A resolution.
J.Biochem.(Tokyo), 120, 1996
1V3I
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BU of 1v3i by Molmil
The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase
分子名称: Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B.
登録日2003-11-02
公開日2004-06-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase.
J.Mol.Biol., 339, 2004
1VEO
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Crystal Structure Analysis of Y164F/maltose of Bacillus cereus Beta-Amylase at pH 4.6
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
登録日2004-04-03
公開日2005-05-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
1VEP
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Crystal Structure Analysis of Triple (T47M/Y164E/T328N)/maltose of Bacillus cereus Beta-Amylase at pH 6.5
分子名称: Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Hirata, A, Adachi, M, Utsumi, S, Mikami, B.
登録日2004-04-03
公開日2005-05-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type
Biochemistry, 43, 2004
3VLV
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BU of 3vlv by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
3WOU
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BU of 3wou by Molmil
Crystal Structure of The Recombinant Thaumatin II at 0.99 A
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin-2
著者Masuda, T, Mikami, B, Tani, F.
登録日2013-12-30
公開日2014-10-22
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Atomic structure of recombinant thaumatin II reveals flexible conformations in two residues critical for sweetness and three consecutive glycine residues
Biochimie, 106, 2014
3WUX
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BU of 3wux by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
分子名称: 1,2-ETHANEDIOL, Unsaturated chondroitin disaccharide hydrolase
著者Nakamichi, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-08
公開日2014-05-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
to be published
3X3T
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Recombinant thaumatin in the presence of 1.5M PST at 293K
分子名称: L(+)-TARTARIC ACID, thaumatin I
著者Masuda, T, Okubo, K, Mikami, B.
登録日2015-01-26
公開日2016-02-03
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3O
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Recombinant thaumatin in the presence of 0.5M PST at 298K
分子名称: L(+)-TARTARIC ACID, thaumatin I
著者Masuda, T, Okubo, K, Mikami, B.
登録日2015-01-26
公開日2016-02-03
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3P
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Recombinant thaumatin in the presence of 0.75M PST at 293K
分子名称: L(+)-TARTARIC ACID, thaumatin I
著者Masuda, T, Okubo, K, Mikami, B.
登録日2015-01-26
公開日2016-02-03
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Recombinant thaumatin in the presence of 0.75M PST at 293K
To be Published
3X30
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Crystal structure of metallo-beta-lactamase from Thermotoga maritima
分子名称: MANGANESE (II) ION, NICKEL (II) ION, UPF0173 metal-dependent hydrolase TM_1162
著者Choi, H.J, Kim, H.J, Matsuura, A, Mikami, B, Yoon, H.J, Lee, H.H.
登録日2015-01-07
公開日2016-02-17
実験手法X-RAY DIFFRACTION (1.921 Å)
主引用文献Crystal structure of metallo-beta-lactamase from Thermotoga maritima
To be Published
3X3Q
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Structure of recombinant thaumatin in the presence of 1.0M PST, pH7 at 293K
分子名称: L(+)-TARTARIC ACID, thaumatin I
著者Masuda, T, Okubo, K, Mikami, B.
登録日2015-01-26
公開日2016-02-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3R
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Recombinant thaumatin in the presence of 1.0M PST and soaked 1 hr at 293K
分子名称: L(+)-TARTARIC ACID, thaumatin I
著者Masuda, T, Okubo, K, Mikami, B.
登録日2015-01-26
公開日2016-02-03
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
3X3S
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Recombinant thaumatin in the presence of 1.5M PST at 293K
分子名称: L(+)-TARTARIC ACID, thaumatin I
著者Masuda, T, Okubo, K, Mikami, B.
登録日2015-01-26
公開日2016-02-03
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Structure of the recombinant thaumatin in the presence of PST at room temperature
To be Published
1JTI
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BU of 1jti by Molmil
Loop-inserted Structure of P1-P1' Cleaved Ovalbumin Mutant R339T
分子名称: Ovalbumin
著者Yamasaki, M, Arii, Y, Mikami, B, Hirose, M.
登録日2001-08-21
公開日2001-09-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Loop-inserted and thermostabilized structure of P1-P1' cleaved ovalbumin mutant R339T.
J.Mol.Biol., 315, 2002

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