2FHB
 
 | | Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltose | | 分子名称: | Alpha-dextrin endo-1,6-alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | | 著者 | Mikami, B, Iwamoto, H, Katsuya, Y, Yoon, H.-J, Demirkan-Sarikaya, E, Malle, D. | | 登録日 | 2005-12-23 | | 公開日 | 2006-06-13 | | 最終更新日 | 2022-03-09 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of pullulanase: evidence for parallel binding of oligosaccharides in the active site
J.Mol.Biol., 359, 2006
|
|
2FHF
 | | Crystal Structure Analysis of Klebsiella pneumoniae pullulanase complexed with maltotetraose | | 分子名称: | Alpha-dextrin endo-1,6-alpha-glucosidase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | | 著者 | Mikami, B, Iwamoto, H, Katsuya, Y, Yoon, H.-J, Demirkan-Sarikaya, E, Malle, D. | | 登録日 | 2005-12-23 | | 公開日 | 2006-06-13 | | 最終更新日 | 2022-03-09 | | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | | 主引用文献 | Crystal structure of pullulanase: evidence for parallel binding of oligosaccharides in the active site
J.Mol.Biol., 359, 2006
|
|
4W7I
 | | Crystal structure of DEH reductase A1-R' mutant | | 分子名称: | 4-deoxy-L-erythro-5-hexoseulose uronate reductase A1-R' | | 著者 | Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W. | | 登録日 | 2014-08-22 | | 公開日 | 2014-09-24 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.98 Å) | | 主引用文献 | Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
|
|
8X3H
 | |
3KSC
 | | Crystal structure of pea prolegumin, an 11S seed globulin from Pisum sativum L. | | 分子名称: | GLYCEROL, LegA class, SULFATE ION | | 著者 | Tandang-Silvas, M.R.G, Fukuda, T, Fukuda, C, Prak, K, Cabanos, C, Kimura, A, Itoh, T, Mikami, B, Maruyama, N, Utsumi, S. | | 登録日 | 2009-11-21 | | 公開日 | 2010-04-21 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.606 Å) | | 主引用文献 | Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
|
|
4XTC
 | | Crystal structure of bacterial alginate ABC transporter in complex with alginate pentasaccharide-bound periplasmic protein | | 分子名称: | AlgM1, AlgM2, AlgQ2, ... | | 著者 | Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2015-01-23 | | 公開日 | 2016-03-02 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (3.6 Å) | | 主引用文献 | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
|
|
4XIG
 | | Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgM1, AlgM2, ... | | 著者 | Kaneko, A, Maruyama, Y, Mizuno, N, Baba, S, Kumasaka, T, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2015-01-07 | | 公開日 | 2016-01-13 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (3.402 Å) | | 主引用文献 | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.
J.Biol.Chem., 292, 2017
|
|
3KGL
 | | Crystal structure of procruciferin, 11S globulin from Brassica napus | | 分子名称: | Cruciferin, GLYCEROL, SULFATE ION | | 著者 | Tandang-Silvas, M.R, Mikami, B, Maruyama, N, Utsumi, S. | | 登録日 | 2009-10-29 | | 公開日 | 2010-04-21 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.981 Å) | | 主引用文献 | Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
|
|
2FV0
 | | UGL_D88N/dGlcA-Glc-Rha-Glc | | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase | | 著者 | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2006-01-28 | | 公開日 | 2006-05-30 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | | 主引用文献 | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
|
|
4XVB
 | |
5XCA
 | | Crystal structure of GH45 endoglucanase EG27II D137A mutant in complex with cellobiose | | 分子名称: | Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | | 著者 | Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B. | | 登録日 | 2017-03-22 | | 公開日 | 2018-03-28 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | | 主引用文献 | High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
|
|
5XBX
 | | Crystal structure of GH45 endoglucanase EG27II in complex with cellobiose | | 分子名称: | Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | | 著者 | Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B. | | 登録日 | 2017-03-21 | | 公開日 | 2018-03-28 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.04 Å) | | 主引用文献 | High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
|
|
5XC8
 | | Crystal structure of GH45 endoglucanase EG27II at pH5.5, in complex with cellobiose | | 分子名称: | Endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose | | 著者 | Nomura, T, Mizutani, K, Iwase, H, Takahashi, N, Mikami, B. | | 登録日 | 2017-03-22 | | 公開日 | 2018-03-28 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | | 主引用文献 | High-resolution crystal structures of the glycoside hydrolase family 45 endoglucanase EG27II from the snail Ampullaria crossean.
Acta Crystallogr D Struct Biol, 75, 2019
|
|
5XS8
 | | Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with two sulfate groups at C-4 and C-6 positions of GalNAc | | 分子名称: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, CALCIUM ION, Extracellular solute-binding protein family 1 | | 著者 | Oiki, S, Kamochi, R, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2017-06-12 | | 公開日 | 2018-01-17 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.952 Å) | | 主引用文献 | Alternative substrate-bound conformation of bacterial solute-binding protein involved in the import of mammalian host glycosaminoglycans.
Sci Rep, 7, 2017
|
|
2FV1
 | | UGL_D88N/dGlcA-GlcNAc | | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Unsaturated glucuronyl hydrolase | | 著者 | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2006-01-28 | | 公開日 | 2006-05-30 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.73 Å) | | 主引用文献 | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
|
|
1FXZ
 | | CRYSTAL STRUCTURE OF SOYBEAN PROGLYCININ A1AB1B HOMOTRIMER | | 分子名称: | GLYCININ G1 | | 著者 | Adachi, M, Takenaka, Y, Gidamis, A.B, Mikami, B, Utsumi, S. | | 登録日 | 2000-09-28 | | 公開日 | 2001-10-03 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Crystal structure of soybean proglycinin A1aB1b homotrimer.
J.Mol.Biol., 305, 2001
|
|
5X9M
 | | Structure of hyper-sweet thaumatin (D21N) | | 分子名称: | GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I | | 著者 | Masuda, T, Okubo, K, Sugahara, M, Suzuki, M, Mikami, B. | | 登録日 | 2017-03-08 | | 公開日 | 2018-03-14 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (0.93 Å) | | 主引用文献 | Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness.
Biochimie, 157, 2019
|
|
1WW6
 | | Agrocybe cylindracea galectin complexed with lactose | | 分子名称: | beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin | | 著者 | Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F. | | 登録日 | 2005-01-03 | | 公開日 | 2005-08-23 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
|
|
5X9L
 | | Recombinant thaumatin I at 0.9 Angstrom | | 分子名称: | GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I | | 著者 | Masuda, T, Okubo, K, Sugahara, M, Suzuki, M, Mikami, B. | | 登録日 | 2017-03-08 | | 公開日 | 2018-03-14 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (0.9 Å) | | 主引用文献 | Subatomic structure of hyper-sweet thaumatin D21N mutant reveals the importance of flexible conformations for enhanced sweetness.
Biochimie, 157, 2019
|
|
1WW4
 | | Agrocybe cylindracea galectin complexed with NeuAca2-3lactose | | 分子名称: | N-acetyl-alpha-neuraminic acid-(2-3)-alpha-D-galactopyranose-(1-4)-alpha-D-glucopyranose, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin | | 著者 | Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F. | | 登録日 | 2004-12-31 | | 公開日 | 2005-08-23 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
|
|
8Y1M
 | | Xylanase R from Bacillus sp. TAR-1 complexed with xylobiose. | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | | 著者 | Nakamura, T, Kuwata, K, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K. | | 登録日 | 2024-01-25 | | 公開日 | 2024-05-22 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR.
Sci Rep, 14, 2024
|
|
7YRS
 | | Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MOPS | | 分子名称: | 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, ZINC ION | | 著者 | Yamamoto, Y, Oiki, S, Takase, R, Mikami, B, Hashimoto, W. | | 登録日 | 2022-08-10 | | 公開日 | 2023-08-16 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.802 Å) | | 主引用文献 | Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs.
J Appl Glycosci (1999), 70, 2023
|
|
2FUZ
 | | UGL hexagonal crystal structure without glycine and DTT molecules | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Unsaturated glucuronyl hydrolase | | 著者 | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2006-01-28 | | 公開日 | 2006-05-30 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
|
|
1WDS
 | | The role of an inner loop in the catalytic mechanism of soybean beta-amylase | | 分子名称: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | | 著者 | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | 登録日 | 2004-05-17 | | 公開日 | 2005-04-05 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (1.64 Å) | | 主引用文献 | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism.
Biochemistry, 44, 2005
|
|
2OKX
 | | Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A | | 分子名称: | CALCIUM ION, GLYCEROL, Rhamnosidase B | | 著者 | Cui, Z, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2007-01-17 | | 公開日 | 2007-11-13 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1
J.Mol.Biol., 374, 2007
|
|
