3ANK
| Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S | 分子名称: | 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889 | 著者 | Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-09-02 | 公開日 | 2010-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | 主引用文献 | Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem., 286, 2011
|
|
3BIK
| Crystal Structure of the PD-1/PD-L1 Complex | 分子名称: | GLYCEROL, Programmed cell death 1 ligand 1, Programmed cell death protein 1 | 著者 | Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N. | 登録日 | 2007-11-30 | 公開日 | 2008-02-26 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors. Proc.Natl.Acad.Sci.Usa, 105, 2008
|
|
2GH4
| YteR/D143N/dGalA-Rha | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR | 著者 | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2006-03-25 | 公開日 | 2006-08-29 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate Biochem.Biophys.Res.Commun., 347, 2006
|
|
1V73
| Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase of a Psychrophile Shewanella SP. | 分子名称: | ACETIC ACID, CALCIUM ION, psychrophilic phosphatase I | 著者 | Tsuruta, H, Mikami, B, Aizono, Y. | 登録日 | 2003-12-09 | 公開日 | 2005-03-01 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.82 Å) | 主引用文献 | Crystal Structure of Cold-Active Protein-Tyrosine Phosphatase from a Psychrophile, Shewanella sp J.Biochem.(Tokyo), 137, 2005
|
|
1VD5
| Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ... | 著者 | Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-03-18 | 公開日 | 2004-07-13 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution J.Biol.Chem., 279, 2004
|
|
1VEN
| Crystal Structure Analysis of Y164E/maltose of Bacilus cereus Beta-amylase at pH 4.6 | 分子名称: | Beta-amylase, CALCIUM ION, alpha-D-glucopyranose | 著者 | Hirata, A, Adachi, M, Utsumi, S, Mikami, B. | 登録日 | 2004-04-03 | 公開日 | 2005-05-24 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.02 Å) | 主引用文献 | Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type Biochemistry, 43, 2004
|
|
1WDP
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | 分子名称: | Beta-amylase, SULFATE ION | 著者 | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | 登録日 | 2004-05-17 | 公開日 | 2005-04-05 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.27 Å) | 主引用文献 | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
|
|
1WDR
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | 分子名称: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | 著者 | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | 登録日 | 2004-05-17 | 公開日 | 2005-04-05 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
|
|
1X1J
| Crystal Structure of Xanthan Lyase (N194A) with a Substrate. | 分子名称: | (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase | 著者 | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2005-04-04 | 公開日 | 2005-07-19 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol., 350, 2005
|
|
1X1H
| |
1WDQ
| The role of an inner loop in the catalytic mechanism of soybean beta-amylase | 分子名称: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | 著者 | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | 登録日 | 2004-05-17 | 公開日 | 2005-04-05 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.28 Å) | 主引用文献 | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry, 44, 2005
|
|
1X1I
| Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product | 分子名称: | (4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID, xanthan lyase | 著者 | Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2005-04-04 | 公開日 | 2005-07-19 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol., 350, 2005
|
|
3A0N
| Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus | 分子名称: | VAL-1, beta-D-glucopyranuronic acid | 著者 | Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2009-03-23 | 公開日 | 2009-10-20 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.45 Å) | 主引用文献 | Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action J.Biol.Chem., 284, 2009
|
|
3A56
| |
3A0O
| Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 | 分子名称: | CHLORIDE ION, Oligo alginate lyase | 著者 | Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2009-03-23 | 公開日 | 2010-03-31 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.11 Å) | 主引用文献 | Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens J.Biol.Chem., 285, 2010
|
|
1Y3Q
| Structure of AlgQ1, alginate-binding protein | 分子名称: | AlgQ1, CALCIUM ION | 著者 | Momma, K, Mishima, Y, Hashimoto, W, Mikami, B, Murata, K. | 登録日 | 2004-11-26 | 公開日 | 2005-04-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Direct Evidence for Sphingomonas sp. A1 Periplasmic Proteins as Macromolecule-Binding Proteins Associated with the ABC Transporter: Molecular Insights into Alginate Transport in the Periplasm(,) Biochemistry, 44, 2005
|
|
3AMJ
| The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1 | 分子名称: | ZINC ION, zinc peptidase active subunit, zinc peptidase inactive subunit | 著者 | Maruyama, Y, Chuma, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-08-20 | 公開日 | 2011-02-09 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase J.Mol.Biol., 407, 2011
|
|
1YUL
| Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa | 分子名称: | CITRIC ACID, Probable nicotinate-nucleotide adenylyltransferase | 著者 | Yoon, H.J, Kim, H.L, Mikami, B, Suh, S.W. | 登録日 | 2005-02-14 | 公開日 | 2005-11-08 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation J.Mol.Biol., 351, 2005
|
|
3AT7
| Crystal structure of bacterial cell-surface alginate-binding protein Algp7 | 分子名称: | Alginate-binding flagellin | 著者 | Maruyama, Y, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2010-12-27 | 公開日 | 2011-02-23 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif. Biochem.Biophys.Res.Commun., 405, 2011
|
|
3BIS
| Crystal Structure of the PD-L1 | 分子名称: | Programmed cell death 1 ligand 1 | 著者 | Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N. | 登録日 | 2007-11-30 | 公開日 | 2008-02-26 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (2.64 Å) | 主引用文献 | The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors. Proc.Natl.Acad.Sci.Usa, 105, 2008
|
|
1V3H
| The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | 分子名称: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | 著者 | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | 登録日 | 2003-11-02 | 公開日 | 2004-06-22 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase. J.Mol.Biol., 339, 2004
|
|
1VEM
| Crystal Structure Analysis of Bacillus Cereus Beta-Amylase at the optimum pH (6.5) | 分子名称: | Beta-amylase, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | 著者 | Hirata, A, Adachi, M, Utsumi, S, Mikami, B. | 登録日 | 2004-04-03 | 公開日 | 2005-05-24 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Engineering of the pH optimum of Bacillus cereus beta-amylase: conversion of the pH optimum from a bacterial type to a higher-plant type Biochemistry, 43, 2004
|
|
2ZAB
| Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) | 分子名称: | Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | 著者 | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-10-02 | 公開日 | 2008-05-27 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | 主引用文献 | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
|
|
2ZUX
| Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | 著者 | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2008-10-28 | 公開日 | 2009-02-03 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | 主引用文献 | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
|
|
2Z8S
| Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid | 分子名称: | CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid | 著者 | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2007-09-10 | 公開日 | 2007-10-16 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
|
|