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PDB: 51938 results

6V7P
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BU of 6v7p by Molmil
Crystal structure of SUMO1 in complex with PIAS-SIM2
Descriptor: Protein PIAS, Small ubiquitin-related modifier 1
Authors:Lussier-Price, M, Wahba, H.M, Mascle, X.H, Cappadocia, L, Sakaguchi, K, Omichinski, J.G.
Deposit date:2019-12-09
Release date:2020-04-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.395 Å)
Cite:Characterization of a C-Terminal SUMO-Interacting Motif Present in Select PIAS-Family Proteins.
Structure, 28, 2020
6FLU
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BU of 6flu by Molmil
Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
Descriptor: (2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{R},3~{S},4~{R},6~{S})-2-(hydroxymethyl)-6-methoxy-3-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol, CHLORIDE ION, Photorhabdus asymbitoca lectin PHL, ...
Authors:Houser, J, Jancarikova, G, Wimmerova, M.
Deposit date:2018-01-28
Release date:2019-02-06
Last modified:2019-10-30
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica.
Sci Rep, 9, 2019
6G8C
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BU of 6g8c by Molmil
Crystal Structure of the Amyloid-like IYQYGG segment from the R1 repeat of the E. coli Biofilm-associated CsgA Curli protein
Descriptor: Major curlin subunit
Authors:Landau, M, Perov, S.
Deposit date:2018-04-08
Release date:2019-04-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural Insights into Curli CsgA Cross-beta Fibril Architecture Inspire Repurposing of Anti-amyloid Compounds as Anti-biofilm Agents.
Plos Pathog., 15, 2019
7ALS
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BU of 7als by Molmil
Alpha and beta Lactose isomer structure of Galectin 8, N-terminal domain
Descriptor: CHLORIDE ION, Galectin-8, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Hakansson, M, Walse, B, Diehl, C, Kovacic, R.
Deposit date:2020-10-07
Release date:2021-11-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Alpha and beta Lactose isomer structure of Galectin 8, N-terminal domain
To Be Published
6VAG
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BU of 6vag by Molmil
Crystal structure of the oligomerization domain of phosphoprotein from parainfluenza virus 5
Descriptor: GLYCEROL, Phosphoprotein
Authors:Aggarwal, M, Abdella, R, He, Y, Lamb, R.A.
Deposit date:2019-12-17
Release date:2020-02-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of a paramyxovirus polymerase complex reveals a unique methyltransferase-CTD conformation.
Proc.Natl.Acad.Sci.USA, 117, 2020
7ENQ
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BU of 7enq by Molmil
Crystal structure of human NAMPT in complex with compound NAT
Descriptor: 2-(2-~{tert}-butylphenoxy)-~{N}-(4-hydroxyphenyl)ethanamide, Nicotinamide phosphoribosyltransferase, PHOSPHATE ION
Authors:Wang, G, Wu, C, Liu, M, Yao, H, Li, C, Wang, L, Tang, Y.
Deposit date:2021-04-19
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.204966 Å)
Cite:Discovery of small-molecule activators of nicotinamide phosphoribosyltransferase (NAMPT) and their preclinical neuroprotective activity.
Cell Res., 32, 2022
6G8E
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BU of 6g8e by Molmil
Crystal Structure of the Amyloid-like VTQVGF segment from the R5 repeat of the E. coli Biofilm-associated CsgA Curli protein
Descriptor: Major curlin subunit
Authors:Landau, M, Perov, S.
Deposit date:2018-04-08
Release date:2019-04-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insights into Curli CsgA Cross-beta Fibril Architecture Inspire Repurposing of Anti-amyloid Compounds as Anti-biofilm Agents.
Plos Pathog., 15, 2019
6FN0
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BU of 6fn0 by Molmil
The animal-like Cryptochrome from Chlamydomonas reinhardtii in complex with 6-4 DNA
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Cryptochrome photoreceptor, ...
Authors:Franz, S, Ignatz, E, Wenzel, S, Zielosko, H, Yamamoto, J, Mittag, M, Essen, L.-O.
Deposit date:2018-02-02
Release date:2018-08-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii.
Nucleic Acids Res., 46, 2018
3VO0
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BU of 3vo0 by Molmil
Crystal structure of beta-glucuronidase from Acidobacterium capsulatum covalent-bonded with 2-deoxy-2-fluoro-D-glucuronic acid
Descriptor: 2,4-DINITROPHENOL, 2-deoxy-2-fluoro-alpha-D-glucopyranuronic acid, 2-deoxy-2-fluoro-beta-D-glucopyranuronic acid, ...
Authors:Momma, M, Fujimoto, Z, Michikawa, M, Ichinose, H, Jongkees, S, Yoshida, M, Kotake, Y, Biely, P, Tsumuraya, Y, Withers, S, Kaneko, S.
Deposit date:2012-01-18
Release date:2012-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and biochemical characterization of glycoside hydrolase family 79 beta-glucuronidase from Acidobacterium capsulatum
J.Biol.Chem., 287, 2012
6VD0
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BU of 6vd0 by Molmil
Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in complex with free Methionine and AMPCPP
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, DI(HYDROXYETHYL)ETHER, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:Sekula, B, Ruszkowski, M, Dauter, Z.
Deposit date:2019-12-23
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula.
Int.J.Biol.Macromol., 151, 2020
2X7B
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BU of 2x7b by Molmil
Crystal structure of the N-terminal acetylase Ard1 from Sulfolobus solfataricus P2
Descriptor: CHLORIDE ION, COENZYME A, N-ACETYLTRANSFERASE SSO0209
Authors:Oke, M, Carter, L.G, Johnson, K.A, Liu, H, Mcmahon, S.A, Mackay, D, White, M.F, Taylor, G.L, Naismith, J.H.
Deposit date:2010-02-25
Release date:2010-07-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Scottish Structural Proteomics Facility: Targets, Methods and Outputs.
J.Struct.Funct.Genomics, 11, 2010
6FQ8
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BU of 6fq8 by Molmil
Class 3 : translocated nucleosome
Descriptor: DNA (147-MER), Histone H2A, Histone H2B, ...
Authors:Bilokapic, S, Halic, M.
Deposit date:2018-02-13
Release date:2018-04-18
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
2ROK
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BU of 2rok by Molmil
Solution structure of the cap-binding domain of PARN complexed with the cap analog
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, poly(A)-specific ribonuclease
Authors:Nagata, T, Suzuki, S, Endo, R, Shirouzu, M, Terada, T, Inoue, M, Kigawa, T, Guntert, P, Hayashizaki, Y, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-03-28
Release date:2009-02-10
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition.
Nucleic Acids Res., 36, 2008
2RNF
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BU of 2rnf by Molmil
X-RAY CRYSTAL STRUCTURE OF HUMAN RIBONUCLEASE 4 IN COMPLEX WITH D(UP)
Descriptor: 2'-DEOXYURIDINE 3'-MONOPHOSPHATE, RIBONUCLEASE 4
Authors:Terzyan, S.S, Peracaula, R, De Llorens, R, Tsushima, Y, Yamada, H, Seno, M, Gomis-Ruth, F.X, Coll, M.
Deposit date:1998-11-03
Release date:1999-11-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The three-dimensional structure of human RNase 4, unliganded and complexed with d(Up), reveals the basis for its uridine selectivity.
J.Mol.Biol., 285, 1999
7E6V
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BU of 7e6v by Molmil
The crystal structure of foot-and-mouth disease virus(FMDV) 2C protein 97-318aa
Descriptor: ACETATE ION, Protein 2C
Authors:Zhang, C, Wojdyla, J.A, Qin, B, Wang, M, Gao, X, Cui, S.
Deposit date:2021-02-24
Release date:2022-06-29
Last modified:2022-07-20
Method:X-RAY DIFFRACTION (1.832 Å)
Cite:An anti-picornaviral strategy based on the crystal structure of foot-and-mouth disease virus 2C protein.
Cell Rep, 40, 2022
6VD1
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BU of 6vd1 by Molmil
Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in complex with S-adenosylmethionine and PPNP
Descriptor: (DIPHOSPHONO)AMINOPHOSPHONIC ACID, 1,2-ETHANEDIOL, 1,3-PROPANDIOL, ...
Authors:Sekula, B, Ruszkowski, M, Dauter, Z.
Deposit date:2019-12-23
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula.
Int.J.Biol.Macromol., 151, 2020
6VGC
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BU of 6vgc by Molmil
Crystal Structures of FLAP bound to DG-031
Descriptor: (2R)-cyclopentyl{4-[(quinolin-2-yl)methoxy]phenyl}acetic acid, 5-lipoxygenase-activating protein, CALCIUM ION, ...
Authors:Ho, J.D, Lee, M.R, Rauch, C.T, Aznavour, K, Park, J.S, Luz, J.G, Antonysamy, S, Condon, B, Maletic, M, Zhang, A, Hickey, M.J, Hughes, N.E, Chandrasekhar, S, Sloan, A.V, Gooding, K, Harvey, A, Yu, X.P, Kahl, S.D, Norman, B.H.
Deposit date:2020-01-07
Release date:2020-12-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure-based, multi-targeted drug discovery approach to eicosanoid inhibition: Dual inhibitors of mPGES-1 and 5-lipoxygenase activating protein (FLAP).
Biochim Biophys Acta Gen Subj, 1865, 2020
2WP3
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BU of 2wp3 by Molmil
Crystal structure of the Titin M10-Obscurin like 1 Ig complex
Descriptor: GLYCEROL, OBSCURIN-LIKE PROTEIN 1, SULFATE ION, ...
Authors:Pernigo, S, Fuzukawa, A, Gautel, M, Steiner, R.A.
Deposit date:2009-08-02
Release date:2010-02-16
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural Insight Into M-Band Assembly and Mechanics from the Titin-Obscurin-Like-1 Complex.
Proc.Natl.Acad.Sci.USA, 107, 2010
6SEH
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BU of 6seh by Molmil
Recognition and processing of branched DNA substrates by Slx1-Slx4 nuclease
Descriptor: Structure-specific endonuclease subunit SLX1, Structure-specific endonuclease subunit SLX4, ZINC ION
Authors:Gaur, V, Zajko, W, Nirwal, S, Szlachcic, A, Gapinska, M, Nowotny, M.
Deposit date:2019-07-30
Release date:2019-09-25
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Recognition and processing of branched DNA substrates by Slx1-Slx4 nuclease.
Nucleic Acids Res., 47, 2019
6VE3
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BU of 6ve3 by Molmil
Tetradecameric PilQ from Pseudomonas aeruginosa
Descriptor: Fimbrial assembly protein PilQ
Authors:McCallum, M, Tammam, S, Rubinstein, J.L, Burrows, L.L, Howell, P.L.
Deposit date:2019-12-28
Release date:2020-12-23
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:CryoEM map of Pseudomonas aeruginosa PilQ enables structural characterization of TsaP.
Structure, 29, 2021
7MX8
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BU of 7mx8 by Molmil
Crystal Structure of HPV L1-directed E7M03 Fab
Descriptor: E7M03 Fab Heavy Chain, E7M03 Fab Light Chain
Authors:Singh, S, Pancera, M.
Deposit date:2021-05-18
Release date:2022-05-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structural Characterisation of Immune Responses to HPV Vaccination
To Be Published
4JGW
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BU of 4jgw by Molmil
The conformation of a docking site for SH3 domains is pre-selected in the Guanine Nucleotide Exchange Factor Rlf
Descriptor: Ral guanine nucleotide dissociation stimulator-like 2
Authors:Rehmann, H, Popovic, M, Jakobi, A.J.
Deposit date:2013-03-04
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The guanine nucleotide exchange factor Rlf interacts with SH3 domain-containing proteins via a binding site with a preselected conformation.
J.Struct.Biol., 183, 2013
4MY9
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BU of 4my9 by Molmil
Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor C91
Descriptor: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase, MALONATE ION, ...
Authors:Kim, Y, Makowska-Grzyska, M, Gu, M, Gorla, S.K, Hedstrom, L, Anderson, W.F, Joachimiak, A, CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2013-09-27
Release date:2014-06-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.5893 Å)
Cite:Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase with an Internal Deletion of the CBS Domain from Bacillus anthracis str. Ames complexed with inhibitor C91
To be Published
7DZ2
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BU of 7dz2 by Molmil
Crystal structures of D-allulose 3-epimerase from Sinorhizobium fredii
Descriptor: D-tagatose 3-epimerase, MAGNESIUM ION, SULFATE ION
Authors:Zhu, Z.L, Miyakawa, T, Tanokura, M, Lu, F.P, Qin, H.-M.
Deposit date:2021-01-23
Release date:2022-08-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Substantial Improvement of an Epimerase for the Synthesis of D-Allulose by Biosensor-Based High-Throughput Microdroplet Screening
Angew.Chem.Int.Ed.Engl., 2023
7DZ3
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BU of 7dz3 by Molmil
Crystal structures of D-allulose 3-epimerase with D-fructose from Sinorhizobium fredii
Descriptor: D-fructose, D-tagatose 3-epimerase, MAGNESIUM ION
Authors:Zhu, Z.L, Miyakawa, T, Tanokura, M, Lu, F.P, Qin, H.-M.
Deposit date:2021-01-23
Release date:2022-08-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Substantial Improvement of an Epimerase for the Synthesis of D-Allulose by Biosensor-Based High-Throughput Microdroplet Screening
Angew.Chem.Int.Ed.Engl., 2023

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