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PDB: 51689 results

5J6Q
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BU of 5j6q by Molmil
Cwp8 from Clostridium difficile
Descriptor: CHLORIDE ION, Cell wall binding protein cwp8, SULFATE ION
Authors:Renko, M, Usenik, A, Turk, D.
Deposit date:2016-04-05
Release date:2017-02-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The CWB2 Cell Wall-Anchoring Module Is Revealed by the Crystal Structures of the Clostridium difficile Cell Wall Proteins Cwp8 and Cwp6.
Structure, 25, 2017
5J8M
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BU of 5j8m by Molmil
Crystal Structure of Hsp90-alpha N-domain L107A mutant in complex with 5-(5-Bromo-2,4-dihydroxy-phenyl)-4-(2-fluoro-phenyl)-2,4-dihydro-[1,2,4]triazol-3-one
Descriptor: 5-(5-Bromo-2,4-dihydroxy-phenyl)-4-(2-fluoro-phenyl)-2,4-dihydro-[1,2,4]triazol-3-one, Heat shock protein HSP 90-alpha
Authors:Amaral, M, Matias, P.
Deposit date:2016-04-08
Release date:2017-12-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Protein conformational flexibility modulates kinetics and thermodynamics of drug binding.
Nat Commun, 8, 2017
6N1O
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BU of 6n1o by Molmil
Oxidized rat cytochrome c mutant (S47E)
Descriptor: 1,2-ETHANEDIOL, Cytochrome c, somatic, ...
Authors:Huttemann, M, Edwards, B.F.P.
Deposit date:2018-11-09
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Serine-47 phosphorylation of cytochromecin the mammalian brain regulates cytochromecoxidase and caspase-3 activity.
Faseb J., 33, 2019
7QNV
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BU of 7qnv by Molmil
human carbonic anhydrase II bound to 3-methylbenzoselenoate
Descriptor: 3-methylbenzoselenoate, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2021-12-22
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.278 Å)
Cite:Benzoselenoates: A novel class of carbonic anhydrase inhibitors.
Bioorg.Chem., 122, 2022
7QOB
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BU of 7qob by Molmil
Human Carbonic Anhydrase I in complex with benzoselenoate
Descriptor: Carbonic anhydrase 1, ZINC ION, benzoselenoate
Authors:Angeli, A, Ferraroni, M.
Deposit date:2021-12-23
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Benzoselenoates: A novel class of carbonic anhydrase inhibitors.
Bioorg.Chem., 122, 2022
8CXP
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BU of 8cxp by Molmil
Characterisation of a Seneca Valley Virus Thermostable Mutant
Descriptor: Capsid protein VP1, Capsid protein VP3, VP2, ...
Authors:Jayawardena, N, Bostina, M, Strauss, M.
Deposit date:2022-05-22
Release date:2022-09-28
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (2.47 Å)
Cite:Characterisation of a Seneca Valley virus thermostable mutant.
Virology, 575, 2022
6HAL
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BU of 6hal by Molmil
Human carbonmonoxy hemoglobin SFX dataset
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Doak, B, Gorel, A, Foucar, L, Barends, T.R.M, Gruenbein, M.L, Hilpert, M, Kloos, M, Nass Kovacs, G, Roome, C.M, Shoeman, R.L, Stricker, M, Tono, K, You, D, Ueda, K, Sherrell, D.A, Owen, R.L, Schlichting, I.
Deposit date:2018-08-07
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallography on a chip - without the chip: sheet-on-sheet sandwich.
Acta Crystallogr D Struct Biol, 74, 2018
7QW7
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BU of 7qw7 by Molmil
Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate fully methylated DNA duplex
Descriptor: Fully methylated DNA duplex, Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
7QW5
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BU of 7qw5 by Molmil
Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate unmethylated DNA duplex
Descriptor: Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE, Unmethylated DNA duplex
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
7QQ7
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BU of 7qq7 by Molmil
Crystal structure of CYP142 from Mycobacterium tuberculosis in complex with an inhibitor at partial occupancy with PEG
Descriptor: ACETATE ION, BROMIDE ION, CHLORIDE ION, ...
Authors:Snee, M, Levy, C, Kavanagh, M.
Deposit date:2022-01-06
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of CYP142 from Mycobacterium tuberculosis in complex with an inhibitor at partial occupancy with PEG
To Be Published
1LHK
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BU of 1lhk by Molmil
ROLE OF PROLINE RESIDUES IN HUMAN LYSOZYME STABILITY: A SCANNING CALORIMETRIC STUDY COMBINED WITH X-RAY STRUCTURE ANALYSIS OF PROLINE MUTANTS
Descriptor: HUMAN LYSOZYME
Authors:Inaka, K, Matsushima, M, Herning, T, Kuroki, R, Yutani, K, Kikuchi, M.
Deposit date:1992-03-27
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Role of proline residues in human lysozyme stability: a scanning calorimetric study combined with X-ray structure analysis of proline mutants.
Biochemistry, 31, 1992
5UJC
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BU of 5ujc by Molmil
Crystal structure of a C.elegans B12-trafficking protein CblC, a human MMACHC homologue
Descriptor: CO-METHYLCOBALAMIN, D(-)-TARTARIC ACID, GLYCEROL, ...
Authors:Li, Z, Shanmuganathan, A, Ruetz, M, Yamada, K, Lesniak, N.A, Krautler, B, Brunold, T.C, Banerjee, R, Koutmos, M.
Deposit date:2017-01-17
Release date:2017-05-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Coordination chemistry controls the thiol oxidase activity of the B12-trafficking protein CblC.
J. Biol. Chem., 292, 2017
4ZZO
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BU of 4zzo by Molmil
Human ERK2 in complex with an irreversible inhibitor
Descriptor: MITOGEN-ACTIVATED PROTEIN KINASE 1, N-[2-[[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]amino]phenyl]propanamide, SULFATE ION
Authors:Ward, R.A, Colclough, N, Challinor, M, Debreczeni, J.E, Eckersley, K, Fairley, G, Feron, L, Flemington, V, Graham, M.A, Greenwood, R, Hopcroft, P, Howard, T.D, James, M, Jones, C.D, Jones, C.R, Renshaw, J, Roberts, K, Snow, L, Tonge, M, Yeung, K.
Deposit date:2015-04-10
Release date:2015-05-27
Last modified:2015-08-26
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structure-Guided Design of Highly Selective and Potent Covalent Inhibitors of Erk1/2.
J.Med.Chem., 58, 2015
6HHR
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BU of 6hhr by Molmil
Hsp90 in complex with 5-(2,4-Dihydroxy-phenyl)-4-(2-fluoro-phenyl)-2,4-dihydro-[1,2,4]triazole-3-thione
Descriptor: 3-[2,4-bis(oxidanyl)phenyl]-4-(2-fluorophenyl)-1~{H}-1,2,4-triazole-5-thione, Heat shock protein HSP 90-alpha, SULFATE ION
Authors:Musil, D, Lehman, M, Eggenweiler, H.-M.
Deposit date:2018-08-29
Release date:2019-07-10
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics.
J.Chem.Inf.Model., 59, 2019
7QVK
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BU of 7qvk by Molmil
NM-02 in complex with HER2-ECD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, NM-02, Receptor tyrosine-protein kinase erbB-2, ...
Authors:Cowan, R, Hall, G, Carr, M.
Deposit date:2022-01-21
Release date:2023-02-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Co-crystallisation and humanisation of an anti-HER2 single-domain antibody as a theranostic tool.
Plos One, 18, 2023
7QW6
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BU of 7qw6 by Molmil
Adenine-specific DNA methyltransferase M.BseCI complexed with AdoHcy and cognate hemimethylated DNA duplex
Descriptor: Hemimethylated DNA duplex, Modification methylase BseCI, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
5FOS
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BU of 5fos by Molmil
HUMANISED MONOMERIC RADA IN COMPLEX WITH OLIGOMERISATION PEPTIDE
Descriptor: DNA REPAIR AND RECOMBINATION PROTEIN RADA, GLYCEROL, PHOSPHATE ION
Authors:Sharpe, T, Moschetti, T, Fischer, G, Marsh, M, Blundell, T.L, Abell, C, Hyvonen, M.
Deposit date:2015-11-26
Release date:2016-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Engineering Archeal Surrogate Systems for the Development of Protein-Protein Interaction Inhibitors against Human RAD51.
J.Mol.Biol., 428, 2016
7QW8
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BU of 7qw8 by Molmil
Adenine-specific DNA methyltransferase M.BseCI
Descriptor: Modification methylase BseCI
Authors:Mitsikas, D.A, Kouyianou, K, Kotsifaki, D, Providaki, M, Bouriotis, V, Glykos, N.M, Kokkinidis, M.
Deposit date:2022-01-24
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of M.BseCI DNA methyltransferase from Geobacillus stearothermophilus.
To Be Published
7F5S
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BU of 7f5s by Molmil
human delta-METTL18 60S ribosome
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Takahashi, M, Kashiwagi, K, Ito, T.
Deposit date:2021-06-22
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance.
Elife, 11, 2022
1JHN
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BU of 1jhn by Molmil
Crystal Structure of the Lumenal Domain of Calnexin
Descriptor: CALCIUM ION, calnexin
Authors:Schrag, J.D, Bergeron, J.M, Li, Y, Borisova, S, Hahn, M, Thomas, D.Y, Cygler, M.
Deposit date:2001-06-28
Release date:2001-10-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Structure of calnexin, an ER chaperone involved in quality control of protein folding.
Mol.Cell, 8, 2001
5JDT
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BU of 5jdt by Molmil
Structure of Spin-labelled T4 lysozyme mutant L118C-R1 at 100K
Descriptor: AZIDE ION, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Loll, B, Consentius, P, Gohlke, U, Mueller, R, Kaupp, M, Heinemann, U, Wahl, M.C, Risse, T.
Deposit date:2016-04-17
Release date:2016-09-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:Tracking Transient Conformational States of T4 Lysozyme at Room Temperature Combining X-ray Crystallography and Site-Directed Spin Labeling.
J.Am.Chem.Soc., 138, 2016
5FV9
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BU of 5fv9 by Molmil
Crystal structure of GalNAc-T2 in complex with compound 16d
Descriptor: 1,2-ETHANEDIOL, GALNAC-T2, GLYCEROL, ...
Authors:Ghirardello, M, Rivas, M, Lacetera, A, Delso, I, Lira-Navarrete, E, Tejero, T, Martin-Santamaria, S, Hurtado-Guerrero, R, Merino, P.
Deposit date:2016-02-03
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Glycomimetics Targeting Glycosyltransferases: Synthetic, Computational and Structural Studies of Less-Polar Conjugates.
Chemistry, 22, 2016
7QXF
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BU of 7qxf by Molmil
Fructose-6-phosphate aldolase (FSA) mutant R134V, S166G, with covalently bound active site ligand
Descriptor: Fructose-6-phosphate aldolase 1
Authors:Dobritzsch, D, Widersten, M, Engel, S.
Deposit date:2022-01-26
Release date:2023-02-08
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Engineered aldolases catalyzing stereoselective aldol reactions between aryl-substituted ketones and aldehydes
Catalysis Science And Technology, 13, 2023
5AHV
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BU of 5ahv by Molmil
Cryo-EM structure of helical ANTH and ENTH tubules on PI(4,5)P2-containing membranes
Descriptor: ANTH DOMAIN OF ENDOCYTIC ADAPTOR SLA2, ENTH DOMAIN OF EPSIN ENT1
Authors:Skruzny, M, Desfosses, A, Prinz, S, Dodonova, S.O, Gieras, A, Uetrecht, C, Jakobi, A.J, Abella, M, Hagen, W.J.H, Schulz, J, Meijers, R, Rybin, V, Briggs, J.A.G, Sachse, C, Kaksonen, M.
Deposit date:2015-02-10
Release date:2015-05-06
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (13.6 Å)
Cite:An Organized Co-Assembly of Clathrin Adaptors is Essential for Endocytosis.
Dev.Cell, 33, 2015
6FY5
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BU of 6fy5 by Molmil
Crystal structure of the macro domain of human macroh2a2
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Core histone macro-H2A.2
Authors:Hothorn, M.
Deposit date:2018-03-10
Release date:2018-04-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:MacroH2A histone variants limit chromatin plasticity through two distinct mechanisms.
EMBO Rep., 19, 2018

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