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PDB: 51938 results

3E5Z
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BU of 3e5z by Molmil
X-Ray structure of the putative gluconolactonase in protein family PF08450. Northeast Structural Genomics Consortium target DrR130.
Descriptor: MAGNESIUM ION, putative Gluconolactonase
Authors:Kuzin, A.P, Abashidze, M, Seetharaman, J, Wang, D, Mao, L, Maglaqui, M, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Tong, S.N, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-08-14
Release date:2008-09-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:X-Ray structure of the putative gluconolactonase in protein family PF08450. Northeast Structural Genomics Consortium target DrR130.
To be Published
8UUK
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BU of 8uuk by Molmil
Pendrin in apo
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, CHOLESTEROL, Lauryl Maltose Neopentyl Glycol, ...
Authors:Wang, L, Hoang, A, Zhou, M.
Deposit date:2023-11-01
Release date:2024-02-07
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Mechanism of anion exchange and small-molecule inhibition of pendrin.
Nat Commun, 15, 2024
8AQ2
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BU of 8aq2 by Molmil
In meso structure of the membrane integral lipoprotein N-acyltransferase Lnt from P. aeruginosa covalently linked with TITC
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Apolipoprotein N-acyltransferase, CITRATE ANION, ...
Authors:Huang, C.-Y, Weichert, D, Boland, C, Smithers, L, Olieric, V, Wang, M, Caffrey, M.
Deposit date:2022-08-11
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
2W92
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BU of 2w92 by Molmil
Structure of a Streptococcus pneumoniae family 85 glycoside hydrolase, Endo-D, in complex with NAG-thiazoline.
Descriptor: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, ENDO-BETA-N-ACETYLGLUCOSAMINIDASE D, PENTAETHYLENE GLYCOL
Authors:Abbott, D.W, Macauley, M.S, Vocadlo, D.J, Boraston, A.B.
Deposit date:2009-01-21
Release date:2009-01-27
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Streptococcus Pneumoniae Endohexosaminidase D, Structural and Mechanistic Insight Into Substrate-Assisted Catalysis in Family 85 Glycoside Hydrolases.
J.Biol.Chem., 284, 2009
5LVA
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BU of 5lva by Molmil
Crystal structure of thermophilic tryptophan halogenase (Th-Hal) enzyme from Streptomycin violaceusniger.
Descriptor: FLAVIN MONONUCLEOTIDE, NAD(P)H-FMN oxidoreductase
Authors:Dunstan, M.S, Menon, B.
Deposit date:2016-09-13
Release date:2016-10-19
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structure and biocatalytic scope of thermophilic flavin-dependent halogenase and flavin reductase enzymes.
Org.Biomol.Chem., 14, 2016
8B0O
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BU of 8b0o by Molmil
Cryo-EM structure apolipoprotein N-acyltransferase Lnt from E.coli in complex with FP3
Descriptor: Apolipoprotein N-acyltransferase, [(2~{R})-3-[(2~{R})-3-[[(2~{R})-1-[[(2~{R})-1-[[(2~{R})-6-[(2-aminophenyl)carbonylamino]-1-azanyl-1-oxidanylidene-hexan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-(hexadecanoylamino)-3-oxidanylidene-propyl]sulfanyl-2-hexadecanoyloxy-propyl] hexadecanoate
Authors:Degtjarik, O, Smithers, L, Boland, C, Caffrey, M, Shalev Benami, M.
Deposit date:2022-09-07
Release date:2023-07-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
8B0L
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BU of 8b0l by Molmil
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with PE
Descriptor: Apolipoprotein N-acyltransferase, PHOSPHATIDYLETHANOLAMINE
Authors:Degtjarik, O, Smithers, L, Boland, C, Caffrey, M, Shalev Benami, M.
Deposit date:2022-09-07
Release date:2023-07-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
8AQ3
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BU of 8aq3 by Molmil
In surfo structure of the membrane integral lipoprotein N-acyltransferase Lnt from E. coli in complex with PE
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Huang, C.-Y, Weichert, D, Boland, C, Smithers, L, Olieric, V, Wang, M, Caffrey, M.
Deposit date:2022-08-11
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
8B0M
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BU of 8b0m by Molmil
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with PE (C387S mutant)
Descriptor: Apolipoprotein N-acyltransferase, PHOSPHATIDYLETHANOLAMINE
Authors:Degtjarik, O, Smithers, L, Boland, C, Caffrey, M, Shalev Benami, M.
Deposit date:2022-09-07
Release date:2023-07-12
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
8AQ4
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BU of 8aq4 by Molmil
In surfo structure of the membrane integral lipoprotein N-acyltransferase Lnt from E. coli in complex with TITC and lyso-PE
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Huang, C.-Y, Weichert, D, Boland, C, Smithers, L, Olieric, V, Wang, M, Caffrey, M.
Deposit date:2022-08-11
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
6IP8
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BU of 6ip8 by Molmil
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T.
Deposit date:2018-11-02
Release date:2019-05-29
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:HCV IRES Captures an Actively Translating 80S Ribosome.
Mol.Cell, 74, 2019
8B0N
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BU of 8b0n by Molmil
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Lyso-PE
Descriptor: Apolipoprotein N-acyltransferase, [(2~{S})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-oxidanyl-propan-2-yl] (~{Z})-octadec-9-enoate
Authors:Degtjarik, O, Smithers, L, Boland, C, Caffrey, M, Shalev Benami, M.
Deposit date:2022-09-07
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
5M4Q
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BU of 5m4q by Molmil
Crystal Structure of Wild-Type Human Prolidase with Mn ions and Pro ligand
Descriptor: GLYCEROL, HYDROXIDE ION, MANGANESE (II) ION, ...
Authors:Wilk, P, Weiss, M.S, Mueller, U, Dobbek, H.
Deposit date:2016-10-18
Release date:2017-07-12
Last modified:2020-04-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Substrate specificity and reaction mechanism of human prolidase.
FEBS J., 284, 2017
8B0P
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BU of 8b0p by Molmil
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Pam3
Descriptor: Apolipoprotein N-acyltransferase, Pam3-SKKKK, [(2~{S})-3-[(2~{S})-3-azanyl-2-(hexadecanoylamino)-3-oxidanylidene-propyl]sulfanyl-2-hexadecanoyloxy-propyl] hexadecanoate
Authors:Degtjarik, O, Smithers, L, Boland, C, Caffrey, M, Shalev Benami, M.
Deposit date:2022-09-07
Release date:2023-07-12
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structure snapshots reveal the mechanism of a bacterial membrane lipoprotein N -acyltransferase.
Sci Adv, 9, 2023
8AX8
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BU of 8ax8 by Molmil
Human Apolipoprotein E4 (ApoE4) N-terminal domain (space group P3121)
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Apolipoprotein E
Authors:Nemergut, M, Marek, M.
Deposit date:2022-08-31
Release date:2023-08-02
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer's Disease drug candidate.
Mol Neurodegener, 18, 2023
6LKL
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BU of 6lkl by Molmil
Two-component system protein mediate signal transduction
Descriptor: ABC transporter, solute-binding protein, MALONIC ACID
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.213 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
8ATL
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BU of 8atl by Molmil
Discovery of IRAK4 Inhibitor 23
Descriptor: Interleukin-1 receptor-associated kinase 4, ~{N}-[6-methoxy-2-(2-morpholin-4-yl-2-oxidanylidene-ethyl)indazol-5-yl]-6-[(1~{R})-2,2,2-tris(fluoranyl)-1-oxidanyl-ethyl]pyridine-2-carboxamide
Authors:Schafer, M, Bothe, U, Schmidt, N, Gunther, J, Nubbemeyer, R, Siebeneicher, H, Ring, S, Boemer, U, Peters, M, Denner, K, Himmel, H, Sutter, A, Terebesi, I, Lange, M, Wenger, A.M, Guimond, N, Thaler, T, Platzek, J, Eberspaecher, U, Steuber, H, Steinmeyer, A, Zollner, T.M.
Deposit date:2022-08-23
Release date:2023-09-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.464 Å)
Cite:Discovery of IRAK4 Inhibitors BAY1834845 (Zabedosertib) and BAY1830839 .
J.Med.Chem., 67, 2024
8AQF
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BU of 8aqf by Molmil
CRYSTAL STRUCTURE OF HUMAN MONOGLYCERIDE LIPASE WITH COMPOUND LEI-515
Descriptor: 1-[(~{R})-[2-chloranyl-4-[(2~{S},3~{S})-4-(3-chlorophenyl)-2,3-dimethyl-piperazin-1-yl]carbonyl-phenyl]sulfinyl]-3,3-bis(fluoranyl)pentan-2-one, Monoglyceride lipase
Authors:Jiang, M, Huizenga, M, Wirt, J, Paloczi, J, Amedi, A, van der Berg, R, Benz, J, Collin, L, Deng, H, Driever, W, Florea, B, Grether, U, Janssen, A, Heitman, L, Lam, T.W, Mohr, F, Pavlovic, A, Ruf, I, Rutjes, H, Stevens, F, van der Vliet, D, van der Wel, T, Wittwer, M, Boeckel, C, Pacher, P, Hohmann, A, van der Stelt, M.
Deposit date:2022-08-12
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of a peripheral restricted, reversible monoacylglycerol lipase inhibitor that reduces liver injury and chemotherapy-induced neuropathy
To Be Published
6LQN
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BU of 6lqn by Molmil
EBV tegument protein BBRF2
Descriptor: Cytoplasmic envelopment protein 1, NITRATE ION, SULFATE ION
Authors:He, H.P, Luo, M, Cao, Y.L, Gao, S.
Deposit date:2020-01-14
Release date:2020-10-07
Last modified:2021-04-21
Method:X-RAY DIFFRACTION (1.600022 Å)
Cite:Structure of Epstein-Barr virus tegument protein complex BBRF2-BSRF1 reveals its potential role in viral envelopment.
Nat Commun, 11, 2020
6LKI
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BU of 6lki by Molmil
Two-component system protein mediate signal transduction
Descriptor: ABC transporter, solute-binding protein, MALONIC ACID, ...
Authors:Wang, M, Tao, Y.
Deposit date:2019-12-19
Release date:2020-12-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:Interface switch mediates signal transmission in a two-component system.
Proc.Natl.Acad.Sci.USA, 117, 2020
6HUS
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BU of 6hus by Molmil
2'-fucosyllactose and 3-fucosyllactose binding protein from Bifidobacterium longum infantis, bound with 3-fucosyllactose
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ABC transporter substrate-binding protein, ZINC ION, ...
Authors:Ejby, M, Abou Hachem, M, Lo Leggio, L, Takane, K, Sakanaka, M.
Deposit date:2018-10-09
Release date:2019-09-04
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.409 Å)
Cite:Evolutionary adaptation in fucosyllactose uptake systems supports bifidobacteria-infant symbiosis.
Sci Adv, 5, 2019
5MBY
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BU of 5mby by Molmil
Crystal Structure of Arg184Gln mutant of Human Prolidase with Mn ions and GlyPro ligand
Descriptor: GLYCEROL, GLYCINE, HYDROXIDE ION, ...
Authors:Wilk, P, Piwowarczyk, R, Mueller, U, Dobbek, H, Weiss, M.S.
Deposit date:2016-11-09
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for prolidase deficiency disease mechanisms.
FEBS J., 285, 2018
3C79
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BU of 3c79 by Molmil
Crystal structure of Aplysia californica AChBP in complex with the neonicotinoid imidacloprid
Descriptor: (2E)-1-[(6-chloropyridin-3-yl)methyl]-N-nitroimidazolidin-2-imine, ISOPROPYL ALCOHOL, Soluble acetylcholine receptor
Authors:Talley, T.T, Harel, M, Hibbs, R.E, Tomizawa, M, Casida, J.E, Taylor, P.W.
Deposit date:2008-02-06
Release date:2008-05-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Atomic interactions of neonicotinoid agonists with AChBP: molecular recognition of the distinctive electronegative pharmacophore.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6LQO
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BU of 6lqo by Molmil
EBV tegument protein BBRF2/BSRF1 complex
Descriptor: ACETATE ION, Cytoplasmic envelopment protein 1, GLYCEROL, ...
Authors:He, H.P, Luo, M, Cao, Y.L, Gao, S.
Deposit date:2020-01-14
Release date:2020-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.0911262 Å)
Cite:Structure of Epstein-Barr virus tegument protein complex BBRF2-BSRF1 reveals its potential role in viral envelopment.
Nat Commun, 11, 2020
6LTO
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BU of 6lto by Molmil
cryo-EM structure of full length human Pannexin1
Descriptor: Pannexin-1
Authors:Mou, L.Q, Ke, M, Xiao, Q.J, Wu, J.P, Deng, D.
Deposit date:2020-01-23
Release date:2020-05-13
Last modified:2020-05-27
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for gating mechanism of Pannexin 1 channel.
Cell Res., 30, 2020

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