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PDB: 51787 results

3ZS5
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BU of 3zs5 by Molmil
Structural basis for kinase selectivity of three clinical p38alpha inhibitors
Descriptor: 1,2-ETHANEDIOL, 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE, MITOGEN-ACTIVATED PROTEIN KINASE 14, ...
Authors:Azevedo, R, van Zeeland, M, Raaijmakers, H.C.A, Kazemier, B, Oubrie, A.
Deposit date:2011-06-23
Release date:2012-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structure of p38 alpha bound to TAK-715: comparison with three classic inhibitors.
Acta Crystallogr. D Biol. Crystallogr., 68, 2012
2L4N
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BU of 2l4n by Molmil
Solution Structure of the Chemokine CCL21
Descriptor: C-C motif chemokine 21
Authors:Veldkamp, C.T, Peterson, F.C, Love, M, Sandberg, J.L.
Deposit date:2010-10-10
Release date:2011-11-02
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of CCL21 and identification of a putative CCR7 binding site.
Biochemistry, 51, 2012
3X2L
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BU of 3x2l by Molmil
X-ray structure of PcCel45A apo form at 95K.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-methylpentane-1,5-diol, Endoglucanase V-like protein
Authors:Nakamura, A, Ishida, T, Ohta, K, Tanaka, H, Inaka, K, Samejima, M, Igarashi, K.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (0.83 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3ZJE
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BU of 3zje by Molmil
A20 OTU domain in reversibly oxidised (SOH) state
Descriptor: 1,2-ETHANEDIOL, A20P50, CHLORIDE ION
Authors:Kulathu, Y, Garcia, F.J, Mevissen, T.E.T, Busch, M, Arnaudo, N, Carroll, K.S, Barford, D, Komander, D.
Deposit date:2013-01-17
Release date:2013-03-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Regulation of A20 and Other Otu Deubiquitinases by Reversible Oxidation
Nat.Commun., 4, 2013
4F60
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BU of 4f60 by Molmil
Crystal structure of Rhodococcus rhodochrous haloalkane dehalogenase mutant (T148L, G171Q, A172V, C176F).
Descriptor: FLUORIDE ION, Haloalkane dehalogenase
Authors:Plevaka, M, Kuta-Smatanova, I, Rezacova, P.
Deposit date:2012-05-14
Release date:2013-01-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Engineering enzyme stability and resistance to an organic cosolvent by modification of residues in the access tunnel.
Angew.Chem.Int.Ed.Engl., 52, 2013
3ZK8
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BU of 3zk8 by Molmil
CRYSTAL STRUCTURE OF PNEUMOCOCCAL SURFACE ANTIGEN PSAA E205Q IN THE METAL-FREE, OPEN STATE
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MANGANESE ABC TRANSPORTER SUBSTRATE-BINDING LIPOPROTEIN
Authors:Counago, R.M, Ween, M.P, Bajaj, M, Zuegg, J, Cooper, M.A, McEwan, A.G, Paton, J.C, Kobe, B, McDevitt, C.A.
Deposit date:2013-01-22
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Imperfect coordination chemistry facilitates metal ion release in the Psa permease.
Nat. Chem. Biol., 10, 2014
2LA8
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BU of 2la8 by Molmil
Solution structure of INAD PDZ5 complexed with Kon-tiki peptide
Descriptor: Inactivation-no-after-potential D protein,kon-tiki peptide
Authors:Zhang, M, Wen, W.
Deposit date:2011-03-08
Release date:2011-11-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The INAD scaffold is a dynamic, redox-regulated modulator of signaling in the Drosophila eye
Cell(Cambridge,Mass.), 145, 2011
2LGE
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BU of 2lge by Molmil
NMR structure of the calcium-bound form of the protein YP_001302112.1 from Parabacteroides distasonis
Descriptor: Uncharacterized protein
Authors:Serrano, P, Geralt, M, Mohanty, B, Wuthrich, K, Joint Center for Structural Genomics (JCSG)
Deposit date:2011-07-25
Release date:2011-08-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure of the calcium-bound form of the protein YP_001302112.1 from Parabacteroides distasonis
To be Published
4XL5
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BU of 4xl5 by Molmil
X-ray structure of bGFP-A / EGFP complex
Descriptor: Green fluorescent protein, bGFP-A
Authors:Chevrel, A, Urvoas, A, Li de la Sierra-Gallay, I, Van Tilbeurgh, H, Minard, P, Valerio-Lepiniec, M.
Deposit date:2015-01-13
Release date:2015-08-19
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Specific GFP-binding artificial proteins ( alpha Rep): a new tool for in vitro to live cell applications.
Biosci.Rep., 35, 2015
2LM3
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BU of 2lm3 by Molmil
Structure of the rhesus monkey TRIM5alpha PRYSPRY domain
Descriptor: Tripartite motif-containing protein 5
Authors:Biris, N, Yang, Y, Taylor, A.B, Tomashevski, A, Guo, M, Hart, P.J, Diaz-Griffero, F, Ivanov, D.N.
Deposit date:2011-11-21
Release date:2012-08-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the rhesus monkey TRIM5alpha PRYSPRY domain, the HIV capsid recognition module.
Proc.Natl.Acad.Sci.USA, 109, 2012
2LLL
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BU of 2lll by Molmil
Solution NMR structure of C-terminal globular domain of human Lamin-B2, Northeast Structural Genomics Consortium target HR8546A
Descriptor: Lamin-B2
Authors:Lemak, A, Yee, A, Houliston, S, Garcia, M, Xu, C, Min, J, Montelione, G.T, Arrowsmith, C, Northeast Structural Genomics Consortium (NESG), Structural Genomics Consortium (SGC), Chaperone-Enabled Studies of Epigenetic Regulation Enzymes (CEBS)
Deposit date:2011-11-11
Release date:2011-12-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR solution structure of c-terminal globular domain of human Lamin-B2
To be Published
3ZDG
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BU of 3zdg by Molmil
Crystal Structure of Ls-AChBP complexed with carbamoylcholine analogue 3-(dimethylamino)butyl dimethylcarbamate (DMABC)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(dimethylamino)butyl dimethylcarbamate, ACETYLCHOLINE BINDING PROTEIN, ...
Authors:Ussing, C.A, Hansen, C.P, Petersen, J.G, Jensen, A.A, Rohde, L.A.H, Ahring, P.K, Nielsen, E.O, Kastrup, J.S, Gajhede, M, Frolund, B, Balle, T.
Deposit date:2012-11-26
Release date:2013-02-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Synthesis, Pharmacology, and Biostructural Characterization of Novel Alpha(4)Beta(2) Nicotinic Acetylcholine Receptor Agonists.
J.Med.Chem., 56, 2013
2LQH
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BU of 2lqh by Molmil
NMR structure of FOXO3a transactivation domains (CR2C-CR3) in complex with CBP KIX domain (2b3l conformation)
Descriptor: CREB-binding protein, Forkhead box O3
Authors:Wang, F, Marshall, C.B, Yamamoto, K, Li, G.B, Gasmi-Seabrook, G.M.C, Okada, H, Mak, T.W, Ikura, M.
Deposit date:2012-03-06
Release date:2012-05-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structures of KIX domain of CBP in complex with two FOXO3a transactivation domains reveal promiscuity and plasticity in coactivator recruitment.
Proc.Natl.Acad.Sci.USA, 109, 2012
1MO0
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BU of 1mo0 by Molmil
Structural Genomics Of Caenorhabditis Elegans: Triose Phosphate Isomerase
Descriptor: ACETATE ION, SULFATE ION, Triosephosphate isomerase
Authors:Symersky, J, Li, S, Finley, J, Liu, Z.-J, Qui, H, Luan, C.H, Carson, M, Tsao, J, Johnson, D, Lin, G, Zhao, J, Thomas, W, Nagy, L.A, Sha, B, DeLucas, L.J, Wang, B.-C, Luo, M, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2002-09-06
Release date:2002-09-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural genomics of Caenorhabditis elegans: triosephosphate isomerase
Proteins, 51, 2003
3ZFS
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BU of 3zfs by Molmil
Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, COENZYME F420, F420-REDUCING HYDROGENASE, ...
Authors:Mills, D.J, Vitt, S, Strauss, M, Shima, S, Vonck, J.
Deposit date:2012-12-12
Release date:2013-03-06
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4 Å)
Cite:De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase from a Methanogenic Archaeon by Cryo-Electron Microscopy
Elife, 2, 2013
2L29
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BU of 2l29 by Molmil
Complex structure of E4 mutant human IGF2R domain 11 bound to IGF-II
Descriptor: Insulin-like growth factor 2 receptor variant, Insulin-like growth factor II
Authors:Williams, C, Hoppe, H, Rezgui, D, Strickland, M, Frago, S, Ellis, R.Z, Wattana-Amorn, P, Prince, S.N, Zaccheo, O.J, Forbes, B, Jones, E.Y, Crump, M.P, Hassan, A.B.
Deposit date:2010-08-13
Release date:2012-02-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:An exon splice enhancer primes IGF2:IGF2R binding site structure and function evolution.
Science, 338, 2012
3ZHC
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BU of 3zhc by Molmil
Structure of the phytase from Citrobacter braakii at 2.3 angstrom resolution.
Descriptor: CHLORIDE ION, FORMIC ACID, PHYTASE
Authors:Wilson, K.S, Ariza, A, Sanchez-Romero, I, Skjot, M, Vind, J, DeMaria, L, Skov, L.K, Sanchez-Ruiz, J.M.
Deposit date:2012-12-20
Release date:2013-08-28
Last modified:2017-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Mechanism of Protein Kinetic Stabilization by Engineered Disulfide Crosslinks
Plos One, 8, 2013
3ZVG
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BU of 3zvg by Molmil
3C protease of Enterovirus 68 complexed with Michael receptor inhibitor 98
Descriptor: 3C PROTEASE, N-(tert-butoxycarbonyl)-O-tert-butyl-L-threonyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide
Authors:Tan, J, Perbandt, M, Mesters, J.R, Hilgenfeld, R.
Deposit date:2011-07-24
Release date:2012-08-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:3C Protease of Enterovirus 68: Structure-Based Design of Michael Acceptor Inhibitors and Their Broad-Spectrum Antiviral Effects Against Picornaviruses.
J.Virol., 87, 2013
8AAA
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BU of 8aaa by Molmil
Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide
Descriptor: 1,1',1''-(1,3,5-triazinane-1,3,5-triyl)tripropan-1-one, Spike protein S1, Stapled peptide
Authors:Brear, P, Chen, L, Gaynor, K, Harman, M, Dods, R, Hyvonen, M.
Deposit date:2022-06-30
Release date:2023-06-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Multivalent bicyclic peptides are an effective antiviral modality that can potently inhibit SARS-CoV-2.
Nat Commun, 14, 2023
2L4E
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BU of 2l4e by Molmil
NMR structure of the UBA domain of S. cerevisiae Dcn1
Descriptor: Defective in cullin neddylation protein 1
Authors:Burschowsky, D, Rudolf, F, Mattle, D, Peter, M, Wider, G.
Deposit date:2010-10-05
Release date:2011-10-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural analysis of the ubiquitin-associated domain (UBA) of yeast Dcn1 in complex with ubiquitin
To be Published
3X0E
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BU of 3x0e by Molmil
Crystal structure of the ectodomain of human CD81 large extracellular loop (hCD81-LEL)
Descriptor: CD81 antigen, MAGNESIUM ION
Authors:Zhang, M, Cui, S.
Deposit date:2014-10-14
Release date:2015-07-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.844 Å)
Cite:An intramolecular bond at cluster of differentiation 81 ectodomain is important for hepatitis C virus entry.
Faseb J., 29, 2015
2LRV
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BU of 2lrv by Molmil
Assignment of E coli periplasmic protein YmgD
Descriptor: Uncharacterized protein ymgD
Authors:Wu, K, Inouye, M, Baum, J, Hsu, S, Masuda, H.
Deposit date:2012-04-13
Release date:2013-04-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of homodimeric periplasmic protein YmgD in E. coli
To be Published
3X0G
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BU of 3x0g by Molmil
Crystal structure of the ectodomain of African green monkey CD81 large extracellular loop (agmCD81-LEL)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CD81
Authors:Zhang, M, Cui, S.
Deposit date:2014-10-14
Release date:2015-07-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:An intramolecular bond at cluster of differentiation 81 ectodomain is important for hepatitis C virus entry.
Faseb J., 29, 2015
2LK0
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BU of 2lk0 by Molmil
Solution structure and binding studies of the RanBP2-type zinc finger of RBM5
Descriptor: RNA-binding protein 5, ZINC ION
Authors:Farina, B, Pellecchia, M.
Deposit date:2011-09-30
Release date:2011-12-28
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Targeting Zinc Finger Domains with Small Molecules: Solution Structure and Binding Studies of the RanBP2-Type Zinc Finger of RBM5.
Chembiochem, 12, 2011
3X2N
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BU of 3x2n by Molmil
Proton relay pathway in inverting cellulase
Descriptor: Endoglucanase V-like protein, SULFATE ION
Authors:Nakamura, A, Ishida, T, Fushinobu, S, Igarashi, K, Samejima, M.
Deposit date:2014-12-22
Release date:2015-10-14
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015

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