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PDB: 51787 results

7ZJW
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Rabbit 80S ribosome as it decodes the Sec-UGA codon
Descriptor: 18S rRNA, 28S rRNA, 40S Ribosomal protein eS19, ...
Authors:Hilal, T, Simonovic, M, Spahn, C.M.T.
Deposit date:2022-04-12
Release date:2022-10-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon.
Science, 376, 2022
2LI0
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Mono-O-GalNAc glycosylated Mucin sequence based on MUC2 Mucin glycoprotein tandem repeat
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, MUC2 Mucin Domain Peptide
Authors:Borgert, A, Heimburg-Molinaro, J, Lasanajak, Y, Ju, T, Liu, M, Thompson, P, Ragupathi, G, Barany, G, Cummings, R, Smith, D, Live, D.
Deposit date:2011-08-18
Release date:2012-04-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Deciphering structural elements of mucin glycoprotein recognition.
Acs Chem.Biol., 7, 2012
2LDY
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Solution structure of the RMM-CTD domains of human LINE-1 ORF1p
Descriptor: ORF1 codes for a 40 kDa product
Authors:Coles, M, Truffault, V.
Deposit date:2011-06-03
Release date:2011-09-21
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Trimeric structure and flexibility of the L1ORF1 protein in human L1 retrotransposition.
Nat.Struct.Mol.Biol., 18, 2011
2LJT
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BU of 2ljt by Molmil
C9L,C14L-LeuA
Descriptor: Bacteriocin leucocin-A
Authors:Sit, C.S, Lohans, C.T, van Belkum, M.J, Campbell, C.D, Miskolzie, M, Vederas, J.C.
Deposit date:2011-09-23
Release date:2012-01-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Substitution of a Conserved Disulfide in the Type IIa Bacteriocin, Leucocin A, with L-Leucine and L-Serine Residues: Effects on Activity and Three-Dimensional Structure.
Chembiochem, 13, 2012
2LL1
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High-resolution solution structure of the orally active insecticidal spider venom peptide U1-TRTX-Sp1a
Descriptor: U1-TRTX-Sp1a
Authors:Hardy, M.C, Daly, N.L, Mobli, M.
Deposit date:2011-10-24
Release date:2012-10-24
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:High-resolution solution structure of the orally active insecticidal spider venom peptide U1-TRTX-Sp1a
To be Published
3WGN
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BU of 3wgn by Molmil
STAPHYLOCOCCUS AUREUS FTSZ bound with GTP-gamma-S
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, Cell division protein FtsZ
Authors:Matsui, T, Mogi, N, Tanaka, I, Yao, M.
Deposit date:2013-08-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.606 Å)
Cite:Structural change in FtsZ Induced by intermolecular interactions between bound GTP and the T7 loop
J.Biol.Chem., 289, 2014
7ZQ3
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Crystal structure of photosynthetic glyceraldehyde-3-phosphate dehydrogenase from Chlamydomonas reinhardtii (CrGAPA) complexed with NADP+
Descriptor: Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Fermani, S, Zaffagnini, M, Lemaire, S.D, Falini, G, Fanti, S, Rossi, J.
Deposit date:2022-04-29
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural snapshots of nitrosoglutathione binding and reactivity underlying S-nitrosylation of photosynthetic GAPDH.
Redox Biol, 54, 2022
2W7T
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Trypanosoma brucei CTPS - glutaminase domain with bound acivicin
Descriptor: CHLORIDE ION, PUTATIVE CYTIDINE TRIPHOSPHATE SYNTHASE
Authors:Welin, M, Moche, M, Arrowsmith, C.H, Berglund, H, Bountra, C, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Johansson, A, Johansson, I, Karlberg, T, Kotenyova, T, Lehtio, L, Nilsson, M.E, Nyman, T, Persson, C, Sagemark, J, Schueler, H, Siponen, M.I, Thorsell, A.G, Tresaugues, L, Van Den Berg, S, Weigelt, J, Wikstrom, M, Wisniewska, M, Nordlund, P, Structural Genomics Consortium (SGC)
Deposit date:2008-12-30
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Trypanosoma Brucei Ctps - Glutaminase Domain with Bound Acivicin
To be Published
2LO0
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BU of 2lo0 by Molmil
Solution structure of the Get5 carboxyl domain from A. fumigatus
Descriptor: Uncharacterized protein
Authors:Chartron, J.W, Vandervelde, D.G, Rao, M, Clemons Jr, W.M.
Deposit date:2012-01-08
Release date:2012-01-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Get5 Carboxyl-terminal Domain Is a Novel Dimerization Motif That Tethers an Extended Get4/Get5 Complex.
J.Biol.Chem., 287, 2012
2LLW
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Solution structure of the yeast Sti1 DP2 domain
Descriptor: Heat shock protein STI1
Authors:Schmid, A.B, Lagleder, S, Graewert, M.A, Roehl, A, Hagn, F, Wandinger, S.K, Cox, M.B, Demmer, O, Richter, K, Groll, M, Kessler, H, Buchner, J.
Deposit date:2011-11-17
Release date:2012-01-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The architecture of functional modules in the Hsp90 co-chaperone Sti1/Hop.
Embo J., 31, 2012
8A2H
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human STING in complex with 2',3'-cyclic-GMP-7-deazaphenyl-AMP
Descriptor: 2-azanyl-9-[(1~{R},6~{R},8~{R},9~{R},10~{S},15~{R},17~{R},18~{R})-8-(4-azanyl-5-phenyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecan-17-yl]-1~{H}-purin-6-one, Stimulator of interferon genes protein
Authors:Smola, M, Vavrina, Z, Boura, E, Brynda, J.
Deposit date:2022-06-03
Release date:2022-10-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Design, Synthesis, and Biochemical and Biological Evaluation of Novel 7-Deazapurine Cyclic Dinucleotide Analogues as STING Receptor Agonists.
J.Med.Chem., 65, 2022
3WVO
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BU of 3wvo by Molmil
Crystal structure of Thermobifida fusca Cse1
Descriptor: CRISPR-associated protein, Cse1 family
Authors:Yuan, Y.A, Tay, M.
Deposit date:2014-06-02
Release date:2015-01-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site.
Protein Sci., 24, 2015
4EVW
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BU of 4evw by Molmil
Crystal Structure of the nucleoside-diphosphate-sugar pyrophosphorylase from Vibrio cholerae RC9. Northeast Structural Genomics Consortium (NESG) Target VcR193.
Descriptor: MAGNESIUM ION, Nucleoside-diphosphate-sugar pyrophosphorylase
Authors:Vorobiev, S, Neely, H, Su, M, Seetharaman, J, Mao, M, Xiao, R, Kohan, E, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-04-26
Release date:2012-05-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the nucleoside-diphosphate-sugar pyrophosphorylase from Vibrio cholerae RC9.
To be Published
3WWP
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BU of 3wwp by Molmil
S-selective hydroxynitrile lyase from Baliospermum montanum (apo2)
Descriptor: (S)-hydroxynitrile lyase, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Nakano, S, Dadashipour, M, Asano, Y.
Deposit date:2014-06-23
Release date:2014-10-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of hydroxynitrile lyase from Baliospermum montanum with crystal structure, molecular dynamics and enzyme kinetics
Biochim.Biophys.Acta, 1844, 2014
3GZC
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BU of 3gzc by Molmil
Structure of human selenocysteine lyase
Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Selenocysteine lyase
Authors:Collins, R, Hogbom, M, Arrowsmith, C, Berglund, H, Edwards, A, Ehn, M, Flodin, S, Flores, A, Graslund, S, Hallberg, B.M, Hammarstrom, M, Karlberg, T, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Ogg, D, Persson, C, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, Uppenberg, J, Van Den Berg, S, Weigelt, J, Holmberg-Schiavone, L, Schuler, H, Structural Genomics Consortium (SGC)
Deposit date:2009-04-07
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Biochemical discrimination between selenium and sulfur 1: a single residue provides selenium specificity to human selenocysteine lyase.
Plos One, 7, 2012
3WXP
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BU of 3wxp by Molmil
Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with cellobiose
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CALCIUM ION, Endoglucanase A, ...
Authors:Kataoka, M, Ishikawa, K.
Deposit date:2014-08-04
Release date:2015-11-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structure of hyperthermophilic family 12 endocellulase mutant (E197A) from Pyrococcus furiosus in complex with cellobiose
To be Published
2OWA
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BU of 2owa by Molmil
Crystal structure of putative GTPase activating protein for ADP ribosylation factor from Cryptosporidium parvum (cgd5_1040)
Descriptor: Arfgap-like finger domain containing protein, ZINC ION
Authors:Dong, A, Lew, J, Zhao, Y, Hassanali, A, Lin, L, Ravichandran, M, Wasney, G, Vedadi, M, Kozieradzki, I, Bochkarev, A, Edwards, A.M, Arrowsmith, C.H, Weigelt, J, Sundstrom, M, Hui, R, Qiu, W, Structural Genomics Consortium (SGC)
Deposit date:2007-02-15
Release date:2007-02-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of putative GTPase activating protein for ADP ribosylation factor from Cryptosporidium parvum (cgd5_1040)
To be Published
3WIP
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BU of 3wip by Molmil
Crystal structure of acetylcholine bound to Ls-AChBP
Descriptor: ACETATE ION, ACETYLCHOLINE, Acetylcholine-binding protein, ...
Authors:Olsen, J.A, Balle, T, Gajhede, M, Ahring, P.K, Kastrup, J.S.
Deposit date:2013-09-24
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular recognition of the neurotransmitter acetylcholine by an acetylcholine binding protein reveals determinants of binding to nicotinic acetylcholine receptors
Plos One, 9, 2014
3WAP
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BU of 3wap by Molmil
Crystal structure of Atg13 LIR-fused human LC3C_8-125
Descriptor: Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3C
Authors:Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
Deposit date:2013-05-06
Release date:2013-12-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
3WJJ
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Crystal structure of IIb selective Fc variant, Fc(P238D), in complex with FcgRIIb
Descriptor: Ig gamma-1 chain C region, Low affinity immunoglobulin gamma Fc region receptor II-b, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Kadono, S, Mimoto, F, Katada, H, Igawa, T, Kuramochi, T, Muraoka, M, Wada, Y, Haraya, K, Miyazaki, T, Hattori, K.
Deposit date:2013-10-10
Release date:2013-11-13
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Engineered antibody Fc variant with selectively enhanced Fc gamma RIIb binding over both Fc gamma RIIaR131 and Fc gamma RIIaH131.
Protein Eng.Des.Sel., 26, 2013
2OWI
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BU of 2owi by Molmil
Solution structure of the RGS domain from human RGS18
Descriptor: Regulator of G-protein signaling 18
Authors:Higman, V.A, Leidert, M, Bray, J, Elkins, J, Soundararajan, M, Doyle, D.A, Gileadi, C, Phillips, C, Schoch, G, Yang, X, Brockmann, C, Schmieder, P, Diehl, A, Sundstrom, M, Arrowsmith, C, Weigelt, J, Edwards, A, Oschkinat, H, Ball, L.J, Structural Genomics Consortium (SGC)
Deposit date:2007-02-16
Release date:2007-02-27
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural diversity in the RGS domain and its interaction with heterotrimeric G protein alpha-subunits.
Proc.Natl.Acad.Sci.Usa, 105, 2008
7ZX0
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BU of 7zx0 by Molmil
Crystal structure of Pol theta polymerase domain in complex with compound 5
Descriptor: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE, 2-[5-bromanyl-3-cyano-6-methyl-4-(trifluoromethyl)pyridin-2-yl]oxy-~{N}-ethyl-~{N}-(3-methylphenyl)ethanamide, DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*(DDG))-3'), ...
Authors:Krajewski, W.W, Turnbull, A.P, Willis, S, Charles, M, Stockley, M, Heald, R.A.
Deposit date:2022-05-19
Release date:2022-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Discovery, Characterization, and Structure-Based Optimization of Small-Molecule In Vitro and In Vivo Probes for Human DNA Polymerase Theta.
J.Med.Chem., 65, 2022
1UGK
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BU of 1ugk by Molmil
Solution structure of the first C2 domain of synaptotagmin IV from human fetal brain (KIAA1342)
Descriptor: Synaptotagmin IV
Authors:Nagashima, T, Hayashi, F, Shirouzu, M, Terada, T, Kigawa, T, Inoue, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Hirota, H, Yoshida, M, Tanaka, A, Osanai, T, Matsuo, Y, Ohara, O, Nagase, T, Kikuno, R, Nakayama, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-12-16
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the first C2 domain of synaptotagmin IV from human fetal brain (KIAA1342)
To be Published
4E47
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SET7/9 in complex with inhibitor (R)-(3-(3-cyanophenyl)-1-oxo-1-(pyrrolidin-1-yl)propan-2-yl)-1,2,3,4-tetrahydroisoquinoline-6- sulfonamide and S-adenosylmethionine
Descriptor: (R)-(3-(3-cyanophenyl)-1-oxo-1-(pyrrolidin-1-yl)propan-2-yl)-1,2,3,4-tetrahydroisoquinoline-6-sulfonamide, BETA-MERCAPTOETHANOL, Histone-lysine N-methyltransferase SETD7, ...
Authors:Walker, J.R, Ouyang, H, Dong, A, Fish, P, Cook, A, Barsyte, D, Vedadi, M, Tatlock, J, Owen, D, Bunnage, M, Bountra, C, Weigelt, J, Edwards, A.M, Arrowsmith, C.H, Brown, P.J, Structural Genomics Consortium (SGC)
Deposit date:2012-03-12
Release date:2012-03-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Setd7 in Complex with Inhibitor and SAM
To be Published
8A4Q
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crystal structures of diastereomer (R,S,S)-13b (13b-H) in complex with the SARS-CoV-2 Mpro.
Descriptor: 3C-like proteinase nsp5, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Ibrahim, M, Hilgenfeld, R, Zhang, L.
Deposit date:2022-06-13
Release date:2022-10-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Diastereomeric Resolution Yields Highly Potent Inhibitor of SARS-CoV-2 Main Protease.
J.Med.Chem., 65, 2022

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