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PDB: 51964 results

6SMA
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BU of 6sma by Molmil
Crystal structure of Human Neutrophil Elastase (HNE) in complex with the 3-Oxo-beta-Sultam inhibitor LMC249
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[[1-[(4-bromophenyl)methyl]-1,2,3-triazol-4-yl]methylcarbamoyl]pentane-3-sulfonic acid, ...
Authors:Brito, J.A, Almeida, V.T, Carvalho, L.M, Moreira, R, Archer, M.
Deposit date:2019-08-21
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:3-Oxo-beta-sultam as a Sulfonylating Chemotype for Inhibition of Serine Hydrolases and Activity-Based Protein Profiling.
Acs Chem.Biol., 15, 2020
3RHX
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BU of 3rhx by Molmil
Crystal structure of the catalytic domain of FGFR1 kinase in complex with ARQ 069
Descriptor: (6S)-6-phenyl-5,6-dihydrobenzo[h]quinazolin-2-amine, 1,2-ETHANEDIOL, Basic fibroblast growth factor receptor 1, ...
Authors:Eathiraj, S, Palma, R, Hirschi, M, Volckova, E, Nakuci, E, Castro, J, Chen, C.R, Chan, T.C, France, D.S, Ashwell, M.A.
Deposit date:2011-04-12
Release date:2011-05-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:A novel mode of protein kinase inhibition exploiting hydrophobic motifs of autoinhibited kinases: discovery of ATP-independent inhibitors of fibroblast growth factor receptor.
J.Biol.Chem., 286, 2011
4KFQ
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BU of 4kfq by Molmil
Crystal structure of the NMDA receptor GluN1 ligand binding domain in complex with 1-thioxo-1,2-dihydro-[1,2,4]triazolo[4,3-a]quinoxalin-4(5H)-one
Descriptor: 1-sulfanyl[1,2,4]triazolo[4,3-a]quinoxalin-4(5H)-one, GLYCEROL, Glutamate receptor ionotropic, ...
Authors:Steffensen, T.B, Tabrizi, F.M, Gajhede, M, Kastrup, J.S.
Deposit date:2013-04-27
Release date:2013-10-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and pharmacological characterization of a novel N-methyl-D-aspartate (NMDA) receptor antagonist at the GluN1 glycine binding site.
J.Biol.Chem., 288, 2013
4P58
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BU of 4p58 by Molmil
Crystal structure of mouse comt bound to an inhibitor
Descriptor: 1',3'-dimethyl-1H,1'H-3,4'-bipyrazole, Catechol O-methyltransferase
Authors:Lanier, M.
Deposit date:2014-03-15
Release date:2014-06-25
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:A fragment-based approach to identifying S-adenosyl-l-methionine -competitive inhibitors of catechol O-methyl transferase (COMT).
J.Med.Chem., 57, 2014
6SJ6
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BU of 6sj6 by Molmil
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Khusainov, I, Pellegrino, S, Yusupova, G, Yusupov, M, Fatkhullin, B.
Deposit date:2019-08-12
Release date:2020-04-08
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Mechanism of ribosome shutdown by RsfS in Staphylococcus aureus revealed by integrative structural biology approach.
Nat Commun, 11, 2020
3DOH
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BU of 3doh by Molmil
Crystal Structure of a Thermostable Esterase
Descriptor: SULFATE ION, esterase
Authors:Levisson, M, Sun, L, Hendriks, S, Dijkstra, B.W, Van der Oost, J, Kengen, S.W.M.
Deposit date:2008-07-04
Release date:2009-02-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure and biochemical properties of a novel thermostable esterase containing an immunoglobulin-like domain.
J.Mol.Biol., 385, 2009
1KGD
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BU of 1kgd by Molmil
Crystal Structure of the Guanylate Kinase-like Domain of Human CASK
Descriptor: FORMIC ACID, PERIPHERAL PLASMA MEMBRANE CASK
Authors:Li, Y, Spangenberg, O, Paarmann, I, Konrad, M, Lavie, A.
Deposit date:2001-11-26
Release date:2001-12-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.314 Å)
Cite:Structural basis for nucleotide-dependent regulation of membrane-associated guanylate kinase-like domains.
J.Biol.Chem., 277, 2002
2OJ8
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BU of 2oj8 by Molmil
NMR structure of the UGUU tetraloop of Duck Epsilon apical stem loop of the Hepatitis B virus
Descriptor: 5'-R(P*GP*CP*UP*GP*UP*UP*GP*U)-3'
Authors:Girard, F.C, Ottink, O.M, Ampt, K.A.M, Tessari, M, Wijmenga, S.S.
Deposit date:2007-01-12
Release date:2007-05-22
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Thermodynamics and NMR studies on Duck, Heron and Human HBV encapsidation signals.
Nucleic Acids Res., 35, 2007
1KGP
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BU of 1kgp by Molmil
R2F from Corynebacterium Ammoniagenes in its Mn substituted form
Descriptor: MANGANESE (II) ION, Ribonucleotide reductase protein R2F
Authors:Hogbom, M, Huque, Y, Sjoberg, B.M, Nordlund, P.
Deposit date:2001-11-28
Release date:2001-12-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the di-iron/radical protein of ribonucleotide reductase from Corynebacterium ammoniagenes.
Biochemistry, 41, 2002
6SP5
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BU of 6sp5 by Molmil
Structure of hyperstable haloalkane dehalogenase variant DhaA115
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Haloalkane dehalogenase, ...
Authors:Chmelova, K, Markova, K, Damborsky, J, Marek, M.
Deposit date:2019-08-30
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst.
Chem Sci, 11, 2020
3DT5
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BU of 3dt5 by Molmil
C_terminal domain of protein of unknown function AF_0924 from Archaeoglobus fulgidus.
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Uncharacterized protein AF_0924
Authors:Osipiuk, J, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-07-14
Release date:2008-07-29
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:X-ray crystal structure of C_terminal domain of protein of unknown function AF_0924 from Archaeoglobus fulgidus.
To be Published
4KL7
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BU of 4kl7 by Molmil
Crystal structure of the catalytic domain of RpfB from Mycobacterium tuberculosis
Descriptor: Resuscitation-promoting factor RpfB, SULFATE ION
Authors:Squeglia, F, Romano, M, Ruggiero, A, Berisio, R.
Deposit date:2013-05-07
Release date:2013-06-26
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Carbohydrate Recognition by RpfB from Mycobacterium tuberculosis Unveiled by Crystallographic and Molecular Dynamics Analyses.
Biophys.J., 104, 2013
6SLA
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BU of 6sla by Molmil
Crystal structure of isomerase PaaG mutant - D136N with Oxepin-CoA
Descriptor: Enoyl-CoA hydratase/carnithine racemase, ~{S}-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-(2,5-dihydrooxepin-7-yl)ethanethioate
Authors:Saleem-Batcha, R, Spieker, M, Teufel, R.
Deposit date:2019-08-19
Release date:2019-12-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and Mechanistic Basis of an Oxepin-CoA Forming Isomerase in Bacterial Primary and Secondary Metabolism.
Acs Chem.Biol., 14, 2019
6SLJ
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BU of 6slj by Molmil
Structure of the RagAB peptide transporter
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ALA-SER-THR-THR-GLY-ALA-ASN-SER-GLN-ARG, ...
Authors:Madej, M, Ranson, N.A, White, J.B.R.
Deposit date:2019-08-20
Release date:2020-05-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.04 Å)
Cite:Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Nat Microbiol, 5, 2020
6G71
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BU of 6g71 by Molmil
Structure of CYP1232A24 from Arthrobacter sp.
Descriptor: 1,2-ETHANEDIOL, Cytochrome P450, FE (III) ION, ...
Authors:Dubiel, P, Sharma, M, Klenk, J, Hauer, B, Grogan, G.
Deposit date:2018-04-04
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Identification and characterization of cytochrome P450 1232A24 and 1232F1 from Arthrobacter sp. and their role in the metabolic pathway of papaverine.
J.Biochem., 166, 2019
6GAZ
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BU of 6gaz by Molmil
Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
Descriptor: 12S ribosomal RNA, mitochondrial, 28S ribosomal protein S18b, ...
Authors:Kummer, E, Leibundgut, M, Boehringer, D, Ban, N.
Deposit date:2018-04-13
Release date:2018-08-08
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.
Nature, 560, 2018
4KLV
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BU of 4klv by Molmil
Crystal structure of a GNAT superfamily acetyltransferase PA4794 in complex with 4-methylumbelliferyl phosphate
Descriptor: 1,2-ETHANEDIOL, 4-methylumbelliferyl phosphate, SULFATE ION, ...
Authors:Majorek, K.A, Chruszcz, M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-05-07
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural, Functional, and Inhibition Studies of a Gcn5-related N-Acetyltransferase (GNAT) Superfamily Protein PA4794: A NEW C-TERMINAL LYSINE PROTEIN ACETYLTRANSFERASE FROM PSEUDOMONAS AERUGINOSA.
J.Biol.Chem., 288, 2013
3P7T
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BU of 3p7t by Molmil
Radiation damage study of thermolysin - 160K structure A (0.1 MGy)
Descriptor: CALCIUM ION, Thermolysin, ZINC ION
Authors:Juers, D.H, Weik, M.
Deposit date:2010-10-12
Release date:2010-12-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Radiation damage study of thermolysin - 160K structure A (0.1 MGy)
To be Published
4KSC
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BU of 4ksc by Molmil
Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain
Descriptor: Multidrug resistance protein 1A
Authors:Ward, A, Szewczyk, P, Grimard, V, Lee, C.-W, Martinez, L, Doshi, R, Caya, A, Villaluz, M, Pardon, E, Cregger, C, Swartz, D.J, Falson, P, Urbatsch, I, Govaerts, C, Steyaert, J, Chang, G.
Deposit date:2013-05-17
Release date:2013-07-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structures of P-glycoprotein reveal its conformational flexibility and an epitope on the nucleotide-binding domain.
Proc.Natl.Acad.Sci.USA, 110, 2013
3OS9
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BU of 3os9 by Molmil
Estrogen Receptor
Descriptor: 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3DQX
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BU of 3dqx by Molmil
chicken c-Src kinase domain in complex with ATPgS
Descriptor: ADENOSINE MONOPHOSPHATE, Proto-oncogene tyrosine-protein kinase Src
Authors:Azam, M, Seeliger, M.A, Gray, N, Kuriyan, J, Daley, G.Q.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Activation of tyrosine kinases by mutation of the gatekeeper threonine.
Nat.Struct.Mol.Biol., 15, 2008
4HGJ
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BU of 4hgj by Molmil
Crystal structure of P450 BM3 5F5 heme domain variant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Bifunctional P-450/NADPH-P450 reductase, GLYCEROL, ...
Authors:Shehzad, A, Panneerselvam, S, Bocola, M, Mueller-Dieckmann, J, Wilmanns, M, Schwaneberg, U.
Deposit date:2012-10-08
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:P450 BM3 crystal structures reveal the role of the charged surface residue Lys/Arg184 in inversion of enantioselective styrene epoxidation.
Chem.Commun.(Camb.), 49, 2013
3P98
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BU of 3p98 by Molmil
The crystal structure of the extended spectrum beta-lactamase TEM-72 reveals inhibition by citrate
Descriptor: Beta-lactamase TEM-72, CITRIC ACID, DI(HYDROXYETHYL)ETHER
Authors:Docquier, J.D, Benvenuti, M, Calderone, V, Rossolini, G.M, Mangani, S.
Deposit date:2010-10-16
Release date:2011-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the extended-spectrum [beta]-lactamase TEM-72 inhibited by citrate
Acta Crystallogr.,Sect.F, 67, 2011
3DRU
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BU of 3dru by Molmil
Crystal Structure of Gly117Phe Alpha1-Antitrypsin
Descriptor: Alpha-1-antitrypsin
Authors:Gooptu, B, Nobeli, I, Purkiss, A, Phillips, R.L, Mallya, M, Lomas, D.A, Barrett, T.E.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystallographic and cellular characterisation of two mechanisms stabilising the native fold of alpha1-antitrypsin: implications for disease and drug design.
J.Mol.Biol., 387, 2009
6G9L
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BU of 6g9l by Molmil
Structure of homomeric mLRRC8A volume-regulated anion channel at 5.01 A resolution
Descriptor: Volume-regulated anion channel subunit LRRC8A
Authors:Sawicka, M, Deneka, D, Lam, A.K.M, Paulino, C, Dutzler, R.
Deposit date:2018-04-11
Release date:2018-05-16
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (5.01 Å)
Cite:Structure of a volume-regulated anion channel of the LRRC8 family.
Nature, 558, 2018

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