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PDB: 51689 results

7OM9
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BU of 7om9 by Molmil
Thosea asigna virus RdRP domain
Descriptor: RNA-dependent RNA polymerase
Authors:Ferrero, D.S, Falqui, M, Verdaguer, N.
Deposit date:2021-05-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Snapshots of a Non-Canonical RdRP in Action.
Viruses, 13, 2021
4MMU
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BU of 4mmu by Molmil
Crystal Structure of Prefusion-stabilized RSV F Variant DS-Cav1 at pH 5.5
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F1 fused with Fibritin trimerization domain, Fusion glycoprotein F2, ...
Authors:Joyce, M.G, Mclellan, J.S, Stewart-Jones, G.B.E, Sastry, M, Yang, Y, Graham, B.S, Kwong, P.D.
Deposit date:2013-09-09
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-based design of a fusion glycoprotein vaccine for respiratory syncytial virus.
Science, 342, 2013
6VS1
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BU of 6vs1 by Molmil
protein C
Descriptor: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID, Multidrug transporter MdfA, PRASEODYMIUM ION
Authors:Lu, M, Lu, M.M.
Deposit date:2020-02-10
Release date:2020-06-03
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and mechanism of a redesigned multidrug transporter from the Major Facilitator Superfamily.
Sci Rep, 10, 2020
4P47
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BU of 4p47 by Molmil
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM OCHROBACTRUM ANTHROPI (Oant_4429), TARGET EFI-510151, C-TERMIUS BOUND IN LIGAND BINDING POCKET
Descriptor: TRAP dicarboxylate transporter, DctP subunit
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-03-12
Release date:2014-04-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
6HM8
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BU of 6hm8 by Molmil
Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of enterovirus-D68 (fusion protein)
Descriptor: Genome polyprotein, Golgi resident protein GCP60
Authors:Klima, M, Boura, E.
Deposit date:2018-09-12
Release date:2019-07-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.277 Å)
Cite:Convergent evolution in the mechanisms of ACBD3 recruitment to picornavirus replication sites.
Plos Pathog., 15, 2019
7OM6
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BU of 7om6 by Molmil
Thosea asigna virus RdRP domain in complex with RNA
Descriptor: DI(HYDROXYETHYL)ETHER, RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3'), RNA-dependent RNA polymerase
Authors:Ferrero, D.S, Falqui, M, Verdaguer, N.
Deposit date:2021-05-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Snapshots of a Non-Canonical RdRP in Action.
Viruses, 13, 2021
7QLG
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BU of 7qlg by Molmil
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT L259V COMPLEXED WITH FE, NADH, AND GLYCEROL
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FE (III) ION, GLYCEROL, ...
Authors:Sridhar, S, Kiema, T.R, Widertsen, M, Wierenga, R.K.
Deposit date:2021-12-20
Release date:2022-12-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures and kinetic studies of a laboratory evolved aldehyde reductase explain the dramatic shift of its new substrate specificity.
Iucrj, 10, 2023
1LBM
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BU of 1lbm by Molmil
CRYSTAL STRUCTURE OF PHOSPHORIBOSYL ANTHRANILATE ISOMERASE (PRAI) IN COMPLEX WITH REDUCED 1-(O-CARBOXYPHENYLAMINO)-1-DEOXYRIBULOSE 5-PHOSPHATE (RCDRP)
Descriptor: 1-(O-CARBOXY-PHENYLAMINO)-1-DEOXY-D-RIBULOSE-5-PHOSPHATE, PHOSPHORIBOSYL ANTHRANILATE ISOMERASE
Authors:Hennig, M, Sterner, R, Kirschner, K.
Deposit date:2002-04-04
Release date:2002-12-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Two (betaalpha)(8)-barrel enzymes of histidine and tryptophan biosynthesis have similar reaction mechanisms and common strategies for protecting their labile substrates
Biochemistry, 41, 2002
3M5Q
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BU of 3m5q by Molmil
0.93 A Structure of Manganese-Bound Manganese Peroxidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, GLYCEROL, ...
Authors:Sundaramoorthy, M, Gold, M.H, Poulos, T.L.
Deposit date:2010-03-12
Release date:2010-04-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Ultrahigh (0.93A) resolution structure of manganese peroxidase from Phanerochaete chrysosporium: implications for the catalytic mechanism.
J.Inorg.Biochem., 104, 2010
7OM7
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BU of 7om7 by Molmil
Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
Authors:Ferrero, D.S, Falqui, M, Verdaguer, N.
Deposit date:2021-05-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Snapshots of a Non-Canonical RdRP in Action.
Viruses, 13, 2021
6FHY
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BU of 6fhy by Molmil
Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside
Descriptor: (2~{S},3~{S},4~{R},5~{S},6~{S})-2-[[(2~{S},4~{R},6~{R})-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]methyl]-6-methyl-oxane-3,4,5-triol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Houser, J, Jancarikova, G, Wimmerova, M.
Deposit date:2018-01-16
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica.
Sci Rep, 9, 2019
8PXF
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BU of 8pxf by Molmil
Crystal structure of the full length Hh1412 Dsb homodimer.
Descriptor: Disulfide bond oxidoreductase/isomerase
Authors:Wilk, P, Orlikowska, M, Roszczenko-Jasinska, P, Jagusztyn-Krynicka, E.K.
Deposit date:2023-07-23
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structures of Disulfide oxidoreductase/isomerase from Helicobacter hepaticus.
To Be Published
6MXQ
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BU of 6mxq by Molmil
Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation
Descriptor: RNA C-JUN TL
Authors:Walker, M, Shortridge, M, Varani, G.
Deposit date:2018-10-31
Release date:2020-05-06
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun.
J.Mol.Biol., 432, 2020
4MMT
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BU of 4mmt by Molmil
Crystal Structure of Prefusion-stabilized RSV F Variant DS-Cav1 at pH 9.5
Descriptor: Fusion glycoprotein F1 fused with Fibritin trimerization domain, Fusion glycoprotein F2
Authors:Joyce, M.G, Mclellan, J.S, Stewart-Jones, G.B.E, Sastry, M, Yang, Y, Graham, B.S, Kwong, P.D.
Deposit date:2013-09-09
Release date:2013-11-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure-based design of a fusion glycoprotein vaccine for respiratory syncytial virus.
Science, 342, 2013
6P9N
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BU of 6p9n by Molmil
CRYSTAL STRUCTURE OF HIV-1 LM/HT CLADE A/E CRF01 GP120 CORE IN COMPLEX WITH (S)-MCG-IV-210.
Descriptor: (3S)-N~1~-(2-aminoethyl)-N~3~-(4-chloro-3-fluorophenyl)piperidine-1,3-dicarboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Tolbert, W.D, Sherburn, R, Pazgier, M.
Deposit date:2019-06-10
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:A New Family of Small-Molecule CD4-Mimetic Compounds Contacts Highly Conserved Aspartic Acid 368 of HIV-1 gp120 and Mediates Antibody-Dependent Cellular Cytotoxicity.
J.Virol., 93, 2019
6PJC
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BU of 6pjc by Molmil
HIV-1 Protease NL4-3 WT in Complex with LR4-41
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S,4S,5S)-5-{[(2,6-dimethylphenoxy)acetyl]amino}-4-hydroxy-1,6-diphenylhexan-2-yl]carbamate, Protease NL4-3, SULFATE ION
Authors:Lockbaum, G.J, Rusere, L.N, Henes, M, Kosovrasti, K, Lee, S.K, Spielvogel, E, Nalivaika, E.A, Swanstrom, R, KurtYilmaz, N, Schiffer, C.A, Ali, A.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.965 Å)
Cite:Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere.
J.Med.Chem., 63, 2020
7ORE
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BU of 7ore by Molmil
Crystal structure of JNK3 in complex with light-activated covalent inhibitor MR-II-249 with both non-covalent and covalent binding modes (compound 4)
Descriptor: 1,2-ETHANEDIOL, 4-(dimethylamino)-N-[(5Z)-9-[[4-[5-(4-fluorophenyl)-3-methyl-2-methylsulfanyl-imidazol-4-yl]pyridin-2-yl]amino]-11,12-dihydrobenzo[c][1,2]benzodiazocin-2-yl]butanamide, Mitogen-activated protein kinase 10
Authors:Chaikuad, A, Reynders, M, Trauner, D, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2021-06-05
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Controlling the Covalent Reactivity of a Kinase Inhibitor with Light.
Angew.Chem.Int.Ed.Engl., 60, 2021
7OM2
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BU of 7om2 by Molmil
Thosea asigna virus RdRP domain in complex with Mg+2
Descriptor: GLYCEROL, MAGNESIUM ION, RNA-dependent RNA polymerase, ...
Authors:Ferrero, D.S, Falqui, M, Verdaguer, N.
Deposit date:2021-05-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Snapshots of a Non-Canonical RdRP in Action.
Viruses, 13, 2021
6N06
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BU of 6n06 by Molmil
Cryo-EM structure of the HO BMC shell: BMC-T1 in the assembled shell
Descriptor: Microcompartments protein
Authors:Greber, B.J, Sutter, M, Kerfeld, C.A.
Deposit date:2018-11-06
Release date:2019-03-13
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly.
Structure, 27, 2019
6PNX
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BU of 6pnx by Molmil
Crystal Structure of an Asymmetric Dimer of FGF Receptor 3 Kinases Trapped in A-loop Tyrosine Transphosphorylation Reaction
Descriptor: Fibroblast growth factor receptor 3, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SULFATE ION
Authors:Mohammadi, M.
Deposit date:2019-07-03
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.199 Å)
Cite:Molecular basis for receptor tyrosine kinase A-loop tyrosine transphosphorylation.
Nat.Chem.Biol., 16, 2020
1A1G
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BU of 1a1g by Molmil
DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)
Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3'), DSNR ZINC FINGER PEPTIDE, ...
Authors:Elrod-Erickson, M, Benson, T.E, Pabo, C.O.
Deposit date:1997-12-10
Release date:1998-06-10
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition.
Structure, 6, 1998
6PK9
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BU of 6pk9 by Molmil
Solution Structure of lncRNA (LINK-A) 20-nt Hexaloop Hairpin
Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*GP*UP*AP*GP*AP*CP*UP*CP*GP*CP*UP*CP*UP*CP*C)-3')
Authors:Amado, A.Y, Walker, M, Varani, G.
Deposit date:2019-06-28
Release date:2020-07-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of the lncRNA LINK-A Hexaloop Hairpin in PI(3,4,5)P3 Interaction
To Be Published
6W69
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BU of 6w69 by Molmil
The structure of F64, S172A Keap1-BTB domain
Descriptor: Kelch-like ECH-associated protein 1
Authors:Mena, E.L, Gee, C.L, Kuriyan, J, Rape, M.
Deposit date:2020-03-16
Release date:2020-08-19
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Structural basis for dimerization quality control.
Nature, 586, 2020
6PF5
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BU of 6pf5 by Molmil
Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxyphenyl)acetic acid
Descriptor: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Thymidylate synthase, [2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-methoxyphenyl]acetic acid
Authors:Czyzyk, D.J, Valhondo, M, Jorgensen, W.L, Anderson, K.S.
Deposit date:2019-06-21
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structure activity relationship towards design of cryptosporidium specific thymidylate synthase inhibitors.
Eur.J.Med.Chem., 183, 2019
6PFF
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BU of 6pff by Molmil
Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-cyanobenzoic acid.
Descriptor: 2-({4-[(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl]benzene-1-carbonyl}amino)-4-cyanobenzoic acid, 5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE, Bifunctional dihydrofolate reductase-thymidylate synthase, ...
Authors:Czyzyk, D.J, Valhondo, M, Jorgensen, W.L, Anderson, K.S.
Deposit date:2019-06-21
Release date:2019-10-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.982 Å)
Cite:Structure activity relationship towards design of cryptosporidium specific thymidylate synthase inhibitors.
Eur.J.Med.Chem., 183, 2019

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