Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

7GRN
DownloadVisualize
BU of 7grn by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-10
分子名称: 2-[(3S)-pyrrolidin-3-yl]-5-(trifluoromethyl)-1H-benzimidazole, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GRV
DownloadVisualize
BU of 7grv by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-18
分子名称: (2S)-2-(2-fluorophenyl)-1,3-thiazolidin-4-one, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GRS
DownloadVisualize
BU of 7grs by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-15
分子名称: 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, SODIUM ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GS1
DownloadVisualize
BU of 7gs1 by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-24
分子名称: 2-cyano-~{N}-cyclohexyl-ethanamide, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GS0
DownloadVisualize
BU of 7gs0 by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-23
分子名称: (pyridin-2-yl)(quinolin-2-yl)methanone, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7PCK
DownloadVisualize
BU of 7pck by Molmil
CRYSTAL STRUCTURE OF WILD TYPE HUMAN PROCATHEPSIN K
分子名称: PROTEIN (PROCATHEPSIN K)
著者Sivaraman, J, Lalumiere, M, Menard, R, Cygler, M.
登録日1998-10-21
公開日1999-10-25
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of wild-type human procathepsin K.
Protein Sci., 8, 1999
7GRF
DownloadVisualize
BU of 7grf by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-2
分子名称: 3C-like proteinase nsp5, 5-bromopyridin-3-amine, CHLORIDE ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GRJ
DownloadVisualize
BU of 7grj by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-6
分子名称: (5-chloro-1-benzothiophen-3-yl)methanol, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GRW
DownloadVisualize
BU of 7grw by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-19
分子名称: (2S)-N-(3,5-dichlorophenyl)-2-hydroxypropanamide, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
7GRX
DownloadVisualize
BU of 7grx by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-20
分子名称: 1-(2,4-difluorophenyl)pyrrolidine-2,5-dione, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
4ZDJ
DownloadVisualize
BU of 4zdj by Molmil
Crystal structure of the M. tuberculosis CTP synthase PyrG in complex with two UTP molecules
分子名称: CTP synthase, GLYCEROL, MAGNESIUM ION, ...
著者Bellinzoni, M, Barilone, N, Alzari, P.M.
登録日2015-04-17
公開日2015-07-01
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Thiophenecarboxamide Derivatives Activated by EthA Kill Mycobacterium tuberculosis by Inhibiting the CTP Synthetase PyrG.
Chem.Biol., 22, 2015
7GRU
DownloadVisualize
BU of 7gru by Molmil
Crystal structure of SARS-CoV-2 main protease in complex with cpd-17
分子名称: 3-(4-chlorophenyl)-1-methyl-1H-pyrazol-5-amine, 3C-like proteinase nsp5, CHLORIDE ION, ...
著者Huang, C.-Y, Metz, A, Sharpe, M, Sweeney, A.
登録日2023-11-14
公開日2024-02-14
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Fragment-based screening targeting an open form of the SARS-CoV-2 main protease binding pocket.
Acta Crystallogr D Struct Biol, 80, 2024
6AH5
DownloadVisualize
BU of 6ah5 by Molmil
Structure of human P2X3 receptor in complex with ATP and Mg2+ ion
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Hattori, M.
登録日2018-08-16
公開日2019-06-12
最終更新日2020-12-23
実験手法X-RAY DIFFRACTION (3.819 Å)
主引用文献Molecular mechanisms of human P2X3 receptor channel activation and modulation by divalent cation bound ATP.
Elife, 8, 2019
6AI2
DownloadVisualize
BU of 6ai2 by Molmil
Structure of the 328-692 fragment of FlhA (F459A)
分子名称: Flagellar biosynthesis protein FlhA
著者Ogawa, Y, Kinoshita, M, Minamino, T, Imada, K.
登録日2018-08-21
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
6AI1
DownloadVisualize
BU of 6ai1 by Molmil
Structure of the 328-692 fragment of FlhA (D456V)
分子名称: Flagellar biosynthesis protein FlhA
著者Ogawa, Y, Kinoshita, M, Minamino, T, Imada, K.
登録日2018-08-21
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural Insights into the Substrate Specificity Switch Mechanism of the Type III Protein Export Apparatus.
Structure, 27, 2019
8BDC
DownloadVisualize
BU of 8bdc by Molmil
Human apo TRPM8 in a closed state (composite map)
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, CHOLESTEROL HEMISUCCINATE, SODIUM ION, ...
著者Palchevskyi, S, Czarnocki-Cieciura, M, Vistoli, G, Gervasoni, S, Nowak, E, Beccari, A.R, Nowotny, M, Talarico, C.
登録日2022-10-19
公開日2023-11-01
実験手法ELECTRON MICROSCOPY (2.65 Å)
主引用文献Structure of human TRPM8 channel.
Commun Biol, 6, 2023
5ZRO
DownloadVisualize
BU of 5zro by Molmil
M. smegmatis antimutator protein MutT2 in complex with 5mdCTP
分子名称: 1,2-ETHANEDIOL, 2'-DEOXY-5-METHYLCYTIDINE 5'-(TETRAHYDROGEN TRIPHOSPHATE), Putative mutator protein MutT2/NUDIX hydrolase
著者Singh, A, Arif, S.M, Sang, P.B, Varshney, U, Vijayan, M.
登録日2018-04-24
公開日2019-04-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Structural insights into the specificity and catalytic mechanism of mycobacterial nucleotide pool sanitizing enzyme MutT2.
J.Struct.Biol., 204, 2018
6RZX
DownloadVisualize
BU of 6rzx by Molmil
Carbonic Anhydrase CAIX mimic in complex with inhibitor FBSA
分子名称: 1,1,2,2,3,3,4,4,4-nonakis(fluoranyl)butane-1-sulfonamide, Carbonic anhydrase 2, ZINC ION
著者Kugler, M, Brynda, J, Rezacova, P.
登録日2019-06-13
公開日2020-06-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Identification of Novel Carbonic Anhydrase IX Inhibitors Using High-Throughput Screening of Pooled Compound Libraries by DNA-Linked Inhibitor Antibody Assay (DIANA).
SLAS Discov, 25, 2020
7Z8O
DownloadVisualize
BU of 7z8o by Molmil
Crystal structure of SARS-CoV-2 S RBD in complex with a stapled peptide
分子名称: 2,4,6-tris(chloromethyl)-1,3,5-triazine, GLYCEROL, Spike protein S1, ...
著者Brear, P, Chen, L, Gaynor, K, Harman, M, Dods, R, Hyvonen, M.
登録日2022-03-18
公開日2023-06-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (0.96 Å)
主引用文献Multivalent bicyclic peptides are an effective antiviral modality that can potently inhibit SARS-CoV-2.
Nat Commun, 14, 2023
8S3C
DownloadVisualize
BU of 8s3c by Molmil
Crystal structure of Medicago truncatula glutamate dehydrogenase 2 (unliganded)
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Grzechowiak, M, Ruszkowski, M.
登録日2024-02-19
公開日2024-09-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Legume-type glutamate dehydrogenase: Structure, activity, and inhibition studies.
Int.J.Biol.Macromol., 278, 2024
7PLA
DownloadVisualize
BU of 7pla by Molmil
Cryo-EM structure of ShCas12k in complex with a sgRNA and a dsDNA target
分子名称: DNA non-target strand, DNA target strand, ShCas12k, ...
著者Schmitz, M, Jinek, M.
登録日2021-08-30
公開日2021-12-01
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.04 Å)
主引用文献Target site selection and remodelling by type V CRISPR-transposon systems.
Nature, 599, 2021
7PLH
DownloadVisualize
BU of 7plh by Molmil
Scytonema hofmannii TnsC bound to AMPPNP and DNA
分子名称: DNA (5'-D(P*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3'), MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Querques, I, Jinek, M.
登録日2021-08-31
公開日2021-12-01
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.57 Å)
主引用文献Target site selection and remodelling by type V CRISPR-transposon systems.
Nature, 599, 2021
6RZT
DownloadVisualize
BU of 6rzt by Molmil
Structure of s-Mgm1 decorating the outer surface of tubulated lipid membranes
分子名称: Putative mitochondrial dynamin protein
著者Faelber, K, Dietrich, L, Noel, J.K, Sanchez, R, Kudryashev, M, Kuehlbrandt, W, Daumke, O.
登録日2019-06-13
公開日2019-07-24
最終更新日2020-11-18
実験手法ELECTRON MICROSCOPY (14.7 Å)
主引用文献Structure and assembly of the mitochondrial membrane remodelling GTPase Mgm1.
Nature, 571, 2019
4JYJ
DownloadVisualize
BU of 4jyj by Molmil
Crystal Structure of putative enoyl-CoA hydratase/isomerase from Novosphingobium aromaticivorans DSM 12444
分子名称: Enoyl-CoA hydratase/isomerase, UNKNOWN LIGAND
著者Cooper, D.R, Porebski, P.J, Domagalski, M.J, Ahmed, M, Stead, M, Hillerich, B, Seidel, R, Zimmerman, M, Bonanno, J.B, Almo, S.C, Minor, W, New York Structural Genomics Research Consortium (NYSGRC)
登録日2013-03-29
公開日2013-05-29
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of putative enoyl-CoA hydratase/isomerase from Novosphingobium aromaticivorans DSM 12444
To be Published
1WV5
DownloadVisualize
BU of 1wv5 by Molmil
X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form
分子名称: 5'-D(*GP*CP*GP*TP*AP*(2BT)P*AP*CP*GP*C)-3', MAGNESIUM ION
著者Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharam, M.
登録日2004-12-11
公開日2005-06-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Probing the influence of stereoelectronic effects on the biophysical properties of oligonucleotides: comprehensive analysis of the RNA affinity, nuclease resistance, and crystal structure of ten 2'-O-ribonucleic acid modifications.
Biochemistry, 44, 2005

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon