Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51630 件

1HO3
DownloadVisualize
BU of 1ho3 by Molmil
CRYSTAL STRUCTURE ANALYSIS OF E. COLI L-ASPARAGINASE II (Y25F MUTANT)
分子名称: ASPARTIC ACID, L-ASPARAGINASE II
著者Jaskolski, M, Kozak, M, Lubkowski, P, Palm, J.G, Wlodawer, A.
登録日2000-12-08
公開日2001-03-07
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of two highly homologous bacterial L-asparaginases: a case of enantiomorphic space groups.
Acta Crystallogr.,Sect.D, 57, 2001
5M7X
DownloadVisualize
BU of 5m7x by Molmil
Translation initiation factor 4E in complex with (RP)-m2(7,2'O)GppSepG mRNA 5' cap analog (beta-Se-ARCA D1)
分子名称: Eukaryotic translation initiation factor 4E, GLYCEROL, [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl [phosphonooxy(selanyl)phosphoryl] hydrogen phosphate
著者Warminski, M, Nowak, E, Kowalska, J, Jemielity, J, Nowotny, M.
登録日2016-10-28
公開日2017-11-29
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Translation initiation factor 4E in complex with (RP)-m2(7,2'O)GppSepG mRNA 5' cap analog (beta-Se-ARCA D1)
To Be Published
8QRH
DownloadVisualize
BU of 8qrh by Molmil
Inactivated tick-borne encephalitis virus (TBEV) vaccine strain Sofjin-Chumakov
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Genome polyprotein, Small envelope protein M
著者Moiseenko, A.V, Zhang, Y, Vorovitch, M, Ivanova, A, Liu, Z, Osolodkin, D.I, Egorov, A, Ishmukhametov, A, Sokolova, O.S.
登録日2023-10-07
公開日2024-06-05
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献The structure of inactivated mature tick-borne encephalitis virus at 3.0 angstrom resolution.
Emerg Microbes Infect, 13, 2024
6NFW
DownloadVisualize
BU of 6nfw by Molmil
Potyvirus viral protein genome linked (VPg) emulates the m7G cap to recruit the eukaryotic translation initiation factor eIF4E
分子名称: VPg
著者Borden, K, Volpon, L, Osborne, M.
登録日2018-12-21
公開日2019-11-06
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation.
Proc.Natl.Acad.Sci.USA, 116, 2019
5M3W
DownloadVisualize
BU of 5m3w by Molmil
Structure of the GH99 endo-alpha-mannanase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-1,2-dideoxymannose and alpha-1,2-mannobiose
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Glycosyl hydrolase family 71, ...
著者Petricevic, M, Sobala, L.F, Fernandes, P.Z, Raich, L, Thompson, A.J, Bernardo-Seisdedos, G, Millet, O, Zhu, S, Sollogoub, M, Rovira, C, Jimenez-Barbero, J, Davies, G.J, Williams, S.J.
登録日2016-10-17
公開日2017-01-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Contribution of Shape and Charge to the Inhibition of a Family GH99 endo-alpha-1,2-Mannanase.
J. Am. Chem. Soc., 139, 2017
6RTL
DownloadVisualize
BU of 6rtl by Molmil
BACTERIOPHAGE SPP1 PROCAPSID-II PROTEIN
分子名称: Major capsid protein
著者Ignatiou, A, Brasiles, S, El Sadek, M, Buerger, J, Mielke, T, Topf, M, Tavares, P.
登録日2019-05-24
公開日2019-10-23
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Structural transitions during the scaffolding-driven assembly of a viral capsid.
Nat Commun, 10, 2019
7C79
DownloadVisualize
BU of 7c79 by Molmil
Cryo-EM structure of yeast Ribonuclease MRP
分子名称: MAGNESIUM ION, RNases MRP/P 32.9 kDa subunit, Ribonuclease MRP RNA subunit NME1, ...
著者Lan, P, Wu, J, Lei, M.
登録日2020-05-24
公開日2020-07-08
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural insight into precursor ribosomal RNA processing by ribonuclease MRP.
Science, 369, 2020
3MAB
DownloadVisualize
BU of 3mab by Molmil
CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM LISTERIA MONOCYTOGENES, Triclinic FORM
分子名称: uncharacterized protein
著者Madegowda, M, Chruszcz, M, Minor, W, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2010-03-23
公開日2010-04-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Crystal structure of an uncharacterized protein from listeria monocytogenes
To be Published
6GVH
DownloadVisualize
BU of 6gvh by Molmil
Crystal structure of PI3K alpha in complex with 3-(2-Amino-benzooxazol-5-yl)-4-chloro-1-isopropyl-1H-pyrazolo[3,4-d]pyrimidin-6-ylamine
分子名称: 5-(6-azanyl-4-chloranyl-1-propan-2-yl-pyrazolo[3,4-d]pyrimidin-3-yl)-1,3-benzoxazol-2-amine, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
著者Ouvry, G, Aurelly, M, Bonnary, L, Borde, E, Bouix-Peter, C, Chantalat, L, Clary, L, Defoin-Platel, C, Deret, S, Forissier, M, Harris, C.S, Isabet, T, Lamy, L, Luzy, A.P, Pascau, J, Soulet, C, Taddei, A, Taquet, N, Tomas, L, Thoreau, E, Varvier, E, Vial, E, Hennequin, L.F.
登録日2018-06-21
公開日2019-10-02
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.74 Å)
主引用文献Impact of Minor Structural Modifications on Properties of a Series of mTOR Inhibitors.
Acs Med.Chem.Lett., 10, 2019
6H5H
DownloadVisualize
BU of 6h5h by Molmil
A computationally designed dRP lyase domain reconstructed from two heterologous fragments
分子名称: polb4
著者ElGamacy, M, Coles, M, Lupas, A.N.
登録日2018-07-24
公開日2018-12-12
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Asymmetric protein design from conserved supersecondary structures.
J. Struct. Biol., 204, 2018
6GWS
DownloadVisualize
BU of 6gws by Molmil
Crystal structure of human PCNA in complex with three p15 peptides
分子名称: PCNA-associated factor, Proliferating cell nuclear antigen
著者De March, M, Merino, N, Gonzalez-Magana, A, Romano-Moreno, M, Onesti, S, Blanco, F.J, De Biasio, A.
登録日2018-06-25
公開日2018-08-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献p15PAF binding to PCNA modulates the DNA sliding surface.
Nucleic Acids Res., 46, 2018
5LH5
DownloadVisualize
BU of 5lh5 by Molmil
High dose Thaumatin - 40-80 ms.
分子名称: L(+)-TARTARIC ACID, Thaumatin-1
著者Schubert, R, Kapis, S, Heymann, M, Giquel, Y, Bourenkov, G, Schneider, T, Betzel, C, Perbandt, M.
登録日2016-07-08
公開日2016-11-09
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献A multicrystal diffraction data-collection approach for studying structural dynamics with millisecond temporal resolution.
IUCrJ, 3, 2016
5FDD
DownloadVisualize
BU of 5fdd by Molmil
Endonuclease inhibitor 1 bound to influenza strain H1N1 polymerase acidic subunit N-terminal region at pH 7.0
分子名称: 5-(2-chlorobenzyl)-2-hydroxy-3-nitrobenzaldehyde, MANGANESE (II) ION, Polymerase acidic protein,Polymerase acidic protein, ...
著者Fudo, S, Yamamoto, N, Nukaga, M, Odagiri, T, Tashiro, M, Hoshino, T.
登録日2015-12-16
公開日2015-12-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.506 Å)
主引用文献Two Distinctive Binding Modes of Endonuclease Inhibitors to the N-Terminal Region of Influenza Virus Polymerase Acidic Subunit
Biochemistry, 55, 2016
6GFT
DownloadVisualize
BU of 6gft by Molmil
Antinociceptive evaluation of cyriotoxin-1a, the first toxin purified from Cyriopagopus schioedtei spider venom
分子名称: cyriotoxin-1a
著者Kurz, M.
登録日2018-05-02
公開日2019-03-06
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献From identification to functional characterization of cyriotoxin-1a, an antinociceptive toxin from the spider Cyriopagopus schioedtei.
Br.J.Pharmacol., 176, 2019
3MFX
DownloadVisualize
BU of 3mfx by Molmil
Crystal Structure of the sensory box domain of the sensory-box/GGDEF protein SO_1695 from Shewanella oneidensis, Northeast Structural Genomics Consortium Target SoR288B
分子名称: Sensory box/GGDEF family protein
著者Forouhar, F, Abashidze, M, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2010-04-04
公開日2010-04-14
最終更新日2019-07-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Northeast Structural Genomics Consortium Target SoR288B
To be Published
3MEP
DownloadVisualize
BU of 3mep by Molmil
Crystal Structure of ECA2234 protein from Erwinia carotovora, Northeast Structural Genomics Consortium Target EwR44
分子名称: uncharacterized protein ECA2234
著者Seetharaman, J, Abashidze, M, Forouhar, F, Mao, M, Xiao, R, Ciccosanti, C, Wang, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2010-03-31
公開日2010-04-14
最終更新日2019-07-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Northeast Structural Genomics Consortium Target EwR44
To be Published
6GGJ
DownloadVisualize
BU of 6ggj by Molmil
Crystal structure of CotB2 in complex with alendronate
分子名称: 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE, Cyclooctat-9-en-7-ol synthase, MAGNESIUM ION
著者Driller, R, Janke, S, Fuchs, M, Warner, E, Mhashal, A.R, Major, D.T, Christmann, M, Brueck, T, Loll, B.
登録日2018-05-03
公開日2018-10-10
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Towards a comprehensive understanding of the structural dynamics of a bacterial diterpene synthase during catalysis.
Nat Commun, 9, 2018
1IMT
DownloadVisualize
BU of 1imt by Molmil
MAMBA INTESTINAL TOXIN 1, NMR, 39 STRUCTURES
分子名称: INTESTINAL TOXIN 1
著者Boisbouvier, J, Albrand, J.-P, Blackledge, M, Jaquinod, M, Schweitz, H, Lazdunski, M, Marion, D.
登録日1998-04-14
公開日1999-04-20
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献A structural homologue of colipase in black mamba venom revealed by NMR floating disulphide bridge analysis.
J.Mol.Biol., 283, 1998
6GXO
DownloadVisualize
BU of 6gxo by Molmil
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Graf, M, Huter, P, Maracci, C, Peterek, M, Rodnina, M.V, Wilson, D.N.
登録日2018-06-27
公開日2018-08-15
最終更新日2018-10-24
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
Nat Commun, 9, 2018
7CRI
DownloadVisualize
BU of 7cri by Molmil
1 ps Structure of Chloride ion pumping rhodopsin (ClR) with NTQ motif
分子名称: CHLORIDE ION, Chloride pumping rhodopsin, OLEIC ACID, ...
著者Yun, J.H, Liu, H, Lee, W.T, Schmidt, M.
登録日2020-08-13
公開日2020-09-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Early-stage dynamics of chloride ion-pumping rhodopsin revealed by a femtosecond X-ray laser.
Proc.Natl.Acad.Sci.USA, 118, 2021
2AHJ
DownloadVisualize
BU of 2ahj by Molmil
NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE
分子名称: 1,4-DIETHYLENE DIOXIDE, FE (III) ION, NITRIC OXIDE, ...
著者Nagashima, S, Nakasako, M, Dohmae, N, Tsujimura, M, Takio, K, Odaka, M, Yohda, M, Kamiya, N, Endo, I.
登録日1997-12-24
公開日1999-01-27
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Novel non-heme iron center of nitrile hydratase with a claw setting of oxygen atoms.
Nat.Struct.Biol., 5, 1998
6HB9
DownloadVisualize
BU of 6hb9 by Molmil
Crystal structure of the GABARAP in complex with the UBA5 LIR motif
分子名称: Gamma-aminobutyric acid receptor-associated protein
著者Huber, J, Rogov, V, Akutsu, M.
登録日2018-08-10
公開日2019-05-01
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献An atypical LIR motif within UBA5 (ubiquitin like modifier activating enzyme 5) interacts with GABARAP proteins and mediates membrane localization of UBA5.
Autophagy, 16, 2020
6I6P
DownloadVisualize
BU of 6i6p by Molmil
SEPIAPTERIN REDUCTASE IN COMPLEX WITH COMPOUND 3
分子名称: 1,2-ETHANEDIOL, 6-azaspiro[3.4]octan-6-yl-[2,4-bis(chloranyl)-6-oxidanyl-phenyl]methanone, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Alen, J, Schade, M, Wagener, M, Blaesse, M.
登録日2018-11-15
公開日2019-07-10
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Fragment-Based Discovery of Novel Potent Sepiapterin Reductase Inhibitors.
J.Med.Chem., 62, 2019
3MJU
DownloadVisualize
BU of 3mju by Molmil
Crystal structure determination of pigeon (columba livia) haemoglobin at 3.5 angstrom resolution
分子名称: Hemoglobin subunit alpha-A, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
著者Sathya Moorthy, P, Balasubramanian, M, Thenmozhi, M, Ponnuswamy, M.N.
登録日2010-04-13
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystal structure determination of pigeon (columba livia) haemoglobin at 3.5 angstrom resolution
To be Published
5FLX
DownloadVisualize
BU of 5flx by Molmil
Mammalian 40S HCV-IRES complex
分子名称: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ...
著者Yamamoto, H, Collier, M, Loerke, J, Ismer, J, Schmidt, A, Hilal, T, Sprink, T, Yamamoto, K, Mielke, T, Burger, J, Shaikh, T.R, Dabrowski, M, Hildebrand, P.W, Scheerer, P, Spahn, C.M.T.
登録日2015-10-28
公開日2015-12-23
最終更新日2017-08-30
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
Embo J., 34, 2015

224201

件を2024-08-28に公開中

PDB statisticsPDBj update infoContact PDBjnumon