Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 52230 件

4QO3
DownloadVisualize
BU of 4qo3 by Molmil
Crystal structure of C16S/N18S/K12V/C117V/P134V mutant of human acidic fibroblast growth factor
分子名称: CITRATE ANION, Fibroblast growth factor 1, IMIDAZOLE
著者Blaber, M, Xia, X.
登録日2014-06-19
公開日2015-05-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.047 Å)
主引用文献Thermodynamics of Cysteine Substitution Suggest Unique Structural Role for Cysteine in Proteins
To be Published
4QO8
DownloadVisualize
BU of 4qo8 by Molmil
Lactate Dehydrogenase A in complex with substituted 3-Hydroxy-2-mercaptocyclohex-2-enone compound 104
分子名称: (5S)-2-[(2-chlorophenyl)sulfanyl]-5-(2,6-dichlorophenyl)-3-hydroxycyclohex-2-en-1-one, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Eigenbrot, C, Ultsch, M.
登録日2014-06-19
公開日2014-07-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Identification of substituted 3-hydroxy-2-mercaptocyclohex-2-enones as potent inhibitors of human lactate dehydrogenase.
Bioorg.Med.Chem.Lett., 24, 2014
8R2C
DownloadVisualize
BU of 8r2c by Molmil
Crystal structure of the Vint domain from Tetrahymena thermophila
分子名称: DI(HYDROXYETHYL)ETHER, SULFATE ION, von willebrand factor type A (VWA) domain was originally protein
著者Iwai, H, Beyer, H.M, Johannson, J.E, Li, M, Wlodawer, A.
登録日2023-11-03
公開日2024-02-28
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The three-dimensional structure of the Vint domain from Tetrahymena thermophila suggests a ligand-regulated cleavage mechanism by the HINT fold.
Febs Lett., 598, 2024
4QAJ
DownloadVisualize
BU of 4qaj by Molmil
Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa at 1.5 Angstrom resolution
分子名称: Peptidyl-tRNA hydrolase
著者Singh, A, Kumar, A, Gautam, L, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Arora, A, Singh, T.P.
登録日2014-05-05
公開日2014-05-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural and binding studies of peptidyl-tRNA hydrolase from Pseudomonas aeruginosa provide a platform for the structure-based inhibitor design against peptidyl-tRNA hydrolase
Biochem.J., 463, 2014
4QHG
DownloadVisualize
BU of 4qhg by Molmil
Crystal structure of Methanocaldococcus jannaschii dimeric selecase
分子名称: GLYCEROL, Uncharacterized protein MJ1213, ZINC ION
著者Lopez-pelegrin, M, Cerda-costa, N, Cintas-pedrola, A, Herranz-trillo, F, Bernado, P, Peinado, J.R, Arolas, J.L, Gomis-ruth, F.X.
登録日2014-05-28
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Multiple stable conformations account for reversible concentration-dependent oligomerization and autoinhibition of a metamorphic metallopeptidase
Angew.Chem.Int.Ed.Engl., 53, 2014
4QI9
DownloadVisualize
BU of 4qi9 by Molmil
Crystal structure of dihydrofolate reductase from Yersinia pestis complexed with methotrexate
分子名称: Dihydrofolate reductase, METHOTREXATE
著者Maltseva, N, Kim, Y, Makowska-Grzyska, M, Mulligan, R, Shatsman, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2014-05-30
公開日2014-07-02
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.297 Å)
主引用文献Crystal structure of dihydrofolate reductase from Yersinia pestis complexed with methotrexate
To be Published
8QZK
DownloadVisualize
BU of 8qzk by Molmil
Catalytic core of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF) concieved by deep network hallucination: dEngBF4 Hexagonal form
分子名称: ENDO-ALPHA-N-ACETYLGALACTOSAMINIDASE
著者Aghajari, N, Hansen, A.L, Thiesen, F.F, Crehuet, R, Marcos, E, Willemoes, M.
登録日2023-10-27
公開日2024-03-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Carving out a Glycoside Hydrolase Active Site for Incorporation into a New Protein Scaffold Using Deep Network Hallucination.
Acs Synth Biol, 13, 2024
4QG0
DownloadVisualize
BU of 4qg0 by Molmil
Crystal structure of the tetrameric dGTP/dUTP-bound SAMHD1 (RN206) mutant catalytic core
分子名称: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DEOXYURIDINE-5'-TRIPHOSPHATE, ...
著者Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J.
登録日2014-05-22
公開日2014-10-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates.
J.Biol.Chem., 289, 2014
8R4I
DownloadVisualize
BU of 8r4i by Molmil
Cryo-EM structure of human islet amyloid polypeptide (hIAPP)
分子名称: Islet amyloid polypeptide
著者Ooi, S.A, Valli, D, Maj, M.
登録日2023-11-13
公開日2024-03-06
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (4.01 Å)
主引用文献Improving cryo-EM grids for amyloid fibrils using interface-active solutions and spectator proteins.
Biophys.J., 123, 2024
3OE5
DownloadVisualize
BU of 3oe5 by Molmil
Rat catechol O-methyltransferase in complex with a catechol-type, pyridylsulfanyl-containing inhibitor - humanized form
分子名称: Catechol O-methyltransferase, MAGNESIUM ION, N-[(E)-3-[(2R,3S,4R,5S)-3,4-dihydroxy-5-pyridin-4-ylsulfanyl-oxolan-2-yl]prop-2-enyl]-2,3-dihydroxy-5-nitro-benzamide
著者Ehler, A, Schlatter, D, Stihle, M, Benz, J, Rudolph, M.G.
登録日2010-08-12
公開日2011-03-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Molecular Recognition at the Active Site of Catechol-O-methyltransferase (COMT): Adenine Replacements in Bisubstrate Inhibitors
Chemistry, 17, 2011
3BMP
DownloadVisualize
BU of 3bmp by Molmil
HUMAN BONE MORPHOGENETIC PROTEIN-2 (BMP-2)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, PROTEIN (BONE MORPHOGENETIC PROTEIN 2 (BMP-2))
著者Scheufler, C, Sebald, W, Huelsmeyer, M.
登録日1999-03-12
公開日2000-03-12
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of human bone morphogenetic protein-2 at 2.7 A resolution.
J.Mol.Biol., 287, 1999
4QKS
DownloadVisualize
BU of 4qks by Molmil
Crystal Structure of 6xTrp/PV2: de novo designed beta-trefoil architecture with symmetric primary structure (L22W/L44W/L64W/L85W/L108W/L132W his Primitive Version 2)
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DE NOVO PROTEIN 6XTRP/PV2, SULFATE ION
著者Longo, L.M, Tenorio, C.A, Blaber, M.
登録日2014-06-09
公開日2015-01-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding.
Protein Sci., 24, 2015
6HY2
DownloadVisualize
BU of 6hy2 by Molmil
Structure guided design of an antibacterial peptide that targets UDP-N-acetylglucosamine acyltransferase
分子名称: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, TRP-MET-LEU-ASP-PRO-ILE-ALA-GLY-LYS-TRP-SER-ARG
著者Williams, A.H, Dangkulwanich, M.
登録日2018-10-19
公開日2019-01-23
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure guided design of an antibacterial peptide that targets UDP-N-acetylglucosamine acyltransferase.
Sci Rep, 9, 2019
8RZJ
DownloadVisualize
BU of 8rzj by Molmil
ZgGH129 from Zobellia galactanivorans in complex with the inhibitor ADG-IF (3,6-anhydro-D-galacto-isofagomine).
分子名称: (1~{R},5~{R},8~{S})-6-oxa-3-azabicyclo[3.2.1]octan-8-ol, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Roret, T, Czjzek, M, Ficko-Blean, E.
登録日2024-02-12
公開日2024-07-31
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Constrained Catalytic Itinerary of a Retaining 3,6-Anhydro-D-Galactosidase, a Key Enzyme in Red Algal Cell Wall Degradation.
Angew.Chem.Int.Ed.Engl., 63, 2024
4QOD
DownloadVisualize
BU of 4qod by Molmil
The value crystal structure of apo quinone reductase 2 at 1.35A
分子名称: GLYCEROL, Ribosyldihydronicotinamide dehydrogenase [quinone], ZINC ION
著者Serriere, J, Boutin, J.A, Isabet, T, Antoine, M, Ferry, G.
登録日2014-06-20
公開日2015-07-01
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献The value crystal structure of apo quinone reductase 2 at 1.35A
To be Published
5MC5
DownloadVisualize
BU of 5mc5 by Molmil
Crystal Structure of delGlu452 mutant of Human Prolidase with Mn ions and GlyPro ligand
分子名称: GLYCEROL, GLYCINE, HYDROXIDE ION, ...
著者Wilk, P, Mueller, U, Dobbek, H, Weiss, M.S.
登録日2016-11-09
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for prolidase deficiency disease mechanisms.
FEBS J., 285, 2018
4QHT
DownloadVisualize
BU of 4qht by Molmil
Crystal structure of AAA+/ sigma 54 activator domain of the flagellar regulatory protein FlrC from Vibrio cholerae in ATP analog bound state
分子名称: 1,2-ETHANEDIOL, Flagellar regulatory protein C, MAGNESIUM ION, ...
著者Dey, S, Biswas, M, Sen, U, Dasgupta, J.
登録日2014-05-29
公開日2014-07-16
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.559 Å)
主引用文献Unique ATPase site architecture triggers cis-mediated synchronized ATP binding in heptameric AAA+-ATPase domain of flagellar regulatory protein FlrC
J.Biol.Chem., 290, 2015
4QG4
DownloadVisualize
BU of 4qg4 by Molmil
Crystal structure of the tetrameric GTP/dATP/ATP-bound SAMHD1 (H210A) mutant catalytic core
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J.
登録日2014-05-22
公開日2014-10-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates.
J.Biol.Chem., 289, 2014
4QHH
DownloadVisualize
BU of 4qhh by Molmil
Crystal structure of Methanocaldococcus jannaschii tetrameric selecase
分子名称: GLYCEROL, SODIUM ION, Uncharacterized protein MJ1213, ...
著者Lopez-pelegrin, M, Cerda-costa, N, Cintas-pedrola, A, Herranz-trillo, F, Bernado, P, Peinado, J.R, Arolas, J.L, Gomis-ruth, F.X.
登録日2014-05-28
公開日2014-07-16
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Multiple stable conformations account for reversible concentration-dependent oligomerization and autoinhibition of a metamorphic metallopeptidase
Angew.Chem.Int.Ed.Engl., 53, 2014
6KLV
DownloadVisualize
BU of 6klv by Molmil
Hyperthermophilic respiratory Complex III
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, 2-[(2~{E},6~{E},10~{Z},14~{Z},18~{Z},23~{R})-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18-pentaenyl]naphthalene-1,4-dione, ANTIMYCIN, ...
著者Fei, S, Hartmut, M, Yun, Z, Guohong, P, Guoliang, Z, Hui, Z, Shuangbo, Z, Xiaoyun, P, Yan, Z.
登録日2019-07-30
公開日2020-05-13
最終更新日2021-04-07
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献A 3.3 angstrom -Resolution Structure of Hyperthermophilic Respiratory Complex III Reveals the Mechanism of Its Thermal Stability.
Angew.Chem.Int.Ed.Engl., 59, 2020
7TDD
DownloadVisualize
BU of 7tdd by Molmil
AtTPC1 D454N-EDTA state II
分子名称: Two pore calcium channel protein 1
著者Dickinson, M.S, Stroud, R.M.
登録日2021-12-30
公開日2022-10-12
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular basis of multistep voltage activation in plant two-pore channel 1.
Proc.Natl.Acad.Sci.USA, 119, 2022
4QMC
DownloadVisualize
BU of 4qmc by Molmil
Crystal structure of complex formed between phospholipase A2 and Biotin-sulfoxide at 1.09 A Resolution
分子名称: ACETATE ION, BIOTIN-D-SULFOXIDE, GLYCEROL, ...
著者Shukla, P.K, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2014-06-16
公開日2014-07-30
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.09 Å)
主引用文献Crystal structure of complex formed between phospholipase A2 and Biotin-sulfoxide at 1.09 A Resolution
To be published
6KNO
DownloadVisualize
BU of 6kno by Molmil
Structure of single disulfide peptide Czon1107-P7A (minor conformer)
分子名称: Czon1107-P7A(minor conformer)
著者Sarma, S.P, Madhan Kumar, M.
登録日2019-08-06
公開日2020-04-08
最終更新日2024-10-30
実験手法SOLUTION NMR
主引用文献Structure and allosteric activity of a single-disulfide conopeptide fromConus zonatusat human alpha 3 beta 4 and alpha 7 nicotinic acetylcholine receptors.
J.Biol.Chem., 295, 2020
4QO7
DownloadVisualize
BU of 4qo7 by Molmil
Lactate Dehydrogenase A in complex with substituted 3-Hydroxy-2-mercaptocyclohex-2-enone compound 7
分子名称: (2S)-2-HYDROXYPROPANOIC ACID, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Eigenbrot, C, Ultsch, M.
登録日2014-06-19
公開日2014-07-16
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Identification of substituted 3-hydroxy-2-mercaptocyclohex-2-enones as potent inhibitors of human lactate dehydrogenase.
Bioorg.Med.Chem.Lett., 24, 2014
6KMY
DownloadVisualize
BU of 6kmy by Molmil
Structure of single disulfide peptide Czon1107-P5A
分子名称: Czon1107-P5A
著者Sarma, S.P, Madhan Kumar, M.
登録日2019-08-01
公開日2020-04-08
最終更新日2024-10-23
実験手法SOLUTION NMR
主引用文献Structure and allosteric activity of a single-disulfide conopeptide fromConus zonatusat human alpha 3 beta 4 and alpha 7 nicotinic acetylcholine receptors.
J.Biol.Chem., 295, 2020

227111

件を2024-11-06に公開中

PDB statisticsPDBj update infoContact PDBjnumon