Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51630 件

8KHR
DownloadVisualize
BU of 8khr by Molmil
Cryo-EM structure of EBV gH/gL-gp42 in complex with fab 2C1
分子名称: 2C1 heavy chain, 2C1 light chain, Envelope glycoprotein H, ...
著者Fang, X.Y, Zhao, G.X, Zeng, M.S, Liu, Z.
登録日2023-08-22
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Potent human monoclonal antibodies targeting Epstein-Barr virus gp42 reveal vulnerable sites for virus infection.
Cell Rep Med, 5, 2024
7OSA
DownloadVisualize
BU of 7osa by Molmil
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
著者Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2021-06-08
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
6Z0C
DownloadVisualize
BU of 6z0c by Molmil
Structure of in silico modelled artificial Maquette-3 protein
分子名称: Maquette-3, POTASSIUM ION
著者Baumgart, M, Roepke, M, Muehlbauer, M.E, Asami, S, Mader, S.L, Fredriksson, K, Groll, M, Gamiz-Hernandez, A.P, Kaila, V.R.I.
登録日2020-05-08
公開日2021-03-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Design of buried charged networks in artificial proteins
Nat Commun, 12, 2021
3J35
DownloadVisualize
BU of 3j35 by Molmil
Cryo-EM reconstruction of Dengue virus at 37 C
分子名称: envelope protein
著者Zhang, X.Z, Sheng, J, Plevka, P, Kuhn, R.J, Diamond, M.S, Rossmann, M.G.
登録日2013-02-24
公開日2013-04-10
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (35 Å)
主引用文献Dengue structure differs at the temperatures of its human and mosquito hosts.
Proc.Natl.Acad.Sci.USA, 110, 2013
6QSL
DownloadVisualize
BU of 6qsl by Molmil
mTFP* closed conformation: I197C-Y200H-Y204H mutant for enhanced metal binding
分子名称: GFP-like fluorescent chromoprotein cFP484
著者Fischer, J, Renn, D, Arold, T.A, Groll, M.
登録日2019-02-21
公開日2020-01-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers
Acs Catalysis, 2019
6Z0P
DownloadVisualize
BU of 6z0p by Molmil
BceF Tyrosine Kinase Domain
分子名称: ADENOSINE-5'-DIPHOSPHATE, BceF
著者Landau, M, Mayer, M, Abd Alhadi, M, Dvir, H.
登録日2020-05-10
公開日2021-04-14
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and Functional Insights into the Biofilm-Associated BceF Tyrosine Kinase Domain from Burkholderia cepacia .
Biomolecules, 11, 2021
6K67
DownloadVisualize
BU of 6k67 by Molmil
Application of anti-helix antibodies in protein structure determination (9011-3LRH)
分子名称: 3LRH introbody, CALCIUM ION, Engineered calmodulin
著者Lee, J.O, Jin, M.S, Kim, J.W, Kim, S, Lee, H, Cho, G.Y.
登録日2019-06-01
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Application of antihelix antibodies in protein structure determination.
Proc.Natl.Acad.Sci.USA, 116, 2019
1ABO
DownloadVisualize
BU of 1abo by Molmil
CRYSTAL STRUCTURE OF THE COMPLEX OF THE ABL TYROSINE KINASE SH3 DOMAIN WITH 3BP-1 SYNTHETIC PEPTIDE
分子名称: 3BP-1 SYNTHETIC PEPTIDE, 10 RESIDUES, ABL TYROSINE KINASE, ...
著者Musacchio, A, Wilmanns, M, Saraste, M.
登録日1995-05-19
公開日1995-10-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献High-resolution crystal structures of tyrosine kinase SH3 domains complexed with proline-rich peptides.
Nat.Struct.Biol., 1, 1994
7OSM
DownloadVisualize
BU of 7osm by Molmil
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
分子名称: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ...
著者Djumagulov, M, Jenner, L, Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2021-06-09
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Accuracy mechanism of eukaryotic ribosome translocation.
Nature, 600, 2021
4UF1
DownloadVisualize
BU of 4uf1 by Molmil
Deerpox virus DPV022 in complex with Bak BH3
分子名称: Antiapoptotic membrane protein, Bcl-2 homologous antagonist/killer, SULFATE ION
著者Burton, D.R, Kvansakul, M.
登録日2014-12-23
公開日2015-08-05
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis of Deerpox Virus-Mediated Inhibition of Apoptosis.
Acta Crystallogr.,Sect.D, 71, 2015
4UFQ
DownloadVisualize
BU of 4ufq by Molmil
Structure of a novel Hyaluronidase (Hyal_Sk) from Streptomyces koganeiensis.
分子名称: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Gavira, J.A, Messina, L, Pernagallo, S, Unciti-Broceta, J.D, Conejero-Muriel, M, Diaz-Mochon, J.J, Vaccaro, S, Caruso, S, Musumeci, L, Bisicchia, S, Di Pasquale, R.
登録日2015-03-18
公開日2016-04-13
最終更新日2017-08-23
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Identification and Characterization of a Bacterial Hyaluronidase and its Production in Recombinant Form.
FEBS Lett., 590, 2016
6QSM
DownloadVisualize
BU of 6qsm by Molmil
mTFP* open conformation: I197C-Y200H-Y204H mutant for enhanced metal binding
分子名称: GFP-like fluorescent chromoprotein cFP484
著者Fischer, J, Renn, D, Arold, T.A, Groll, M.
登録日2019-02-21
公開日2020-01-01
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献A Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers
Acs Catalysis, 2019
4UOW
DownloadVisualize
BU of 4uow by Molmil
Crystal structure of the titin M10-Obscurin Ig domain 1 complex
分子名称: CHLORIDE ION, Obscurin, SODIUM ION, ...
著者Pernigo, S, Fukuzawa, A, Gautel, M, Steiner, R.A.
登録日2014-06-10
公開日2014-12-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献The Crystal Structure of the Human Titin:Obscurin Complex Reveals a Conserved Yet Specific Muscle M-Band Zipper Module.
J.Mol.Biol., 427, 2015
6KF9
DownloadVisualize
BU of 6kf9 by Molmil
Cryo-EM structure of Thermococcus kodakarensis RNA polymerase
分子名称: DNA (27-MER), DNA (5'-D(P*TP*CP*GP*GP*TP*AP*AP*TP*CP*AP*CP*GP*CP*TP*CP*C)-3'), DNA-directed RNA polymerase subunit, ...
著者Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S.
登録日2019-07-07
公開日2020-07-01
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.79 Å)
主引用文献Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase.
Nat Commun, 11, 2020
4UMX
DownloadVisualize
BU of 4umx by Molmil
IDH1 R132H in complex with cpd 1
分子名称: 2,6-bis(1H-imidazol-1-ylmethyl)-4-(2,4,4-trimethylpentan-2-yl)phenol, GLYCEROL, ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC, ...
著者Mathieu, M, Marquette, J.P.
登録日2014-05-22
公開日2014-11-19
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Selective Inhibition of Mutant Isocitrate Dehydrogenase 1 (Idh1) Via Disruption of a Metal Binding Network by an Allosteric Small Molecule.
J.Biol.Chem., 290, 2015
6I4Z
DownloadVisualize
BU of 6i4z by Molmil
Crystal structure of the disease-causing P453L mutant of the human dihydrolipoamide dehydrogenase
分子名称: Dihydrolipoyl dehydrogenase, mitochondrial, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Szabo, E, Wilk, P, Torocsik, B, Weiss, M.S, Adam-Vizi, V, Ambrus, A.
登録日2018-11-12
公開日2019-11-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.342 Å)
主引用文献Underlying molecular alterations in human dihydrolipoamide dehydrogenase deficiency revealed by structural analyses of disease-causing enzyme variants.
Hum.Mol.Genet., 28, 2019
7Y6L
DownloadVisualize
BU of 7y6l by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab816
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ab816 heavy chain, Ab816 light chain, ...
著者Uchikubo, T, Shirouzu, M.
登録日2022-06-21
公開日2023-06-21
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023
7Y6N
DownloadVisualize
BU of 7y6n by Molmil
The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab803
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ab803 heavy chain, Ab803 light chain, ...
著者Uchikubo, T, Shirouzu, M.
登録日2022-06-21
公開日2023-06-21
最終更新日2023-09-13
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Potent neutralizing broad-spectrum antibody against SARS-CoV-2 generated from dual-antigen-specific B cells from convalescents.
Iscience, 26, 2023
4UHB
DownloadVisualize
BU of 4uhb by Molmil
Laboratory evolved variant R-C1 of potato epoxide hydrolase StEH1
分子名称: 1,2-ETHANEDIOL, EPOXIDE HYDROLASE, GLYCEROL
著者Nilsson, M.T.I, Carlsson, A.J, Dobritzsch, D, Widersten, M.
登録日2015-03-23
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Laboratory Evolved Enzymes Provide Snapshots of the Development of Enantioconvergence in Enzyme-Catalyzed Epoxide Hydrolysis.
Chembiochem, 17, 2016
7P9B
DownloadVisualize
BU of 7p9b by Molmil
Providencia stuartii Arginine decarboxylase (Adc), decamer structure
分子名称: Biodegradative arginine decarboxylase
著者Jessop, M, Desfosses, A, Bacia-Verloop, M, Gutsche, I.
登録日2021-07-26
公開日2022-04-20
実験手法ELECTRON MICROSCOPY (2.45 Å)
主引用文献Structural and biochemical characterisation of the Providencia stuartii arginine decarboxylase shows distinct polymerisation and regulation.
Commun Biol, 5, 2022
5Z3A
DownloadVisualize
BU of 5z3a by Molmil
Glycosidase Wild Type
分子名称: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein
著者Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
登録日2018-01-05
公開日2019-05-15
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.401 Å)
主引用文献Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
7TDD
DownloadVisualize
BU of 7tdd by Molmil
AtTPC1 D454N-EDTA state II
分子名称: Two pore calcium channel protein 1
著者Dickinson, M.S, Stroud, R.M.
登録日2021-12-30
公開日2022-10-12
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Molecular basis of multistep voltage activation in plant two-pore channel 1.
Proc.Natl.Acad.Sci.USA, 119, 2022
7TDE
DownloadVisualize
BU of 7tde by Molmil
AtTPC1 DDE mutant with 1 mM Ca2+
分子名称: Two pore calcium channel protein 1
著者Dickinson, M.S, Stroud, R.M.
登録日2021-12-31
公開日2022-10-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Molecular basis of multistep voltage activation in plant two-pore channel 1.
Proc.Natl.Acad.Sci.USA, 119, 2022
6QWP
DownloadVisualize
BU of 6qwp by Molmil
Crystal structure of T7 bacteriophage portal protein, 13mer, closed valve
分子名称: Portal protein
著者Fabrega-Ferrer, M, Cuervo, A, Machon, C, Fernandez, F.J, Perez-Luque, R, Pous, J, Vega, M.C, Carrascosa, J.L, Coll, M.
登録日2019-03-06
公開日2019-09-04
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structures of T7 bacteriophage portal and tail suggest a viral DNA retention and ejection mechanism.
Nat Commun, 10, 2019
4U8U
DownloadVisualize
BU of 4u8u by Molmil
The Crystallographic structure of the giant hemoglobin from Glossoscolex paulistus at 3.2 A resolution.
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CYANIDE ION, ...
著者Bachega, J.F.R, Maluf, F.V, Andi, B, D'Muniz Pereira, H, Carazzollea, M.F, Orville, A, Tabak, M, Garratt, R.C, Horjales, E.
登録日2014-08-04
公開日2015-06-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The structure of the giant haemoglobin from Glossoscolex paulistus.
Acta Crystallogr.,Sect.D, 71, 2015

224201

件を2024-08-28に公開中

PDB statisticsPDBj update infoContact PDBjnumon