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PDB: 51689 件

1II1
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Structural Basis for Poor Uracil Excision from Hairpin DNA: NMR Study
分子名称: 5'-D(*AP*GP*GP*AP*TP*CP*CP*UP*TP*TP*TP*GP*GP*AP*TP*CP*CP*T)-3'
著者Ghosh, M, Rumpal, N, Varshney, U, Chary, K.V.
登録日2001-04-20
公開日2002-05-08
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural basis for poor uracil excision from hairpin DNA. An NMR study.
Eur.J.Biochem., 269, 2002
6ISF
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Structure of 9N-I DNA polymerase incorporation with dT in the active site
分子名称: CALCIUM ION, DNA (5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), DNA (5'-D(P*GP*CP*GP*GP*AP*CP*TP*GP*CP*TP*TP*AP*CP*CP*T)-3'), ...
著者Linwu, S.W, Maestre-Reyna, M, Tsai, M.D, Tu, Y.H, Chang, W.H.
登録日2018-11-16
公開日2019-08-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Thermococcus sp. 9°N DNA polymerase exhibits 3'-esterase activity that can be harnessed for DNA sequencing.
Commun Biol, 2, 2019
1IJ6
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CA2+-BOUND STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD
分子名称: CALCIUM ION, PLASMODIAL SPECIFIC LAV1-2 PROTEIN
著者Iwasaki, W, Sasaki, H, Nakamura, A, Kohama, K, Tanokura, M.
登録日2001-04-25
公開日2003-02-11
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum
Structure, 11, 2003
7Z1N
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Structure of yeast RNA Polymerase III Delta C53-C37-C11
分子名称: CHAPSO, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC2, ...
著者Girbig, M, Mueller, C.W.
登録日2022-02-24
公開日2022-08-31
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals.
Cell Rep, 40, 2022
7Z1O
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Structure of yeast RNA Polymerase III PTC + NTPs
分子名称: CHAPSO, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ...
著者Girbig, M, Mueller, C.W.
登録日2022-02-24
公開日2022-08-31
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals.
Cell Rep, 40, 2022
4ZIZ
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Serial Femtosecond Crystallography of Soluble Proteins in Lipidic Cubic Phase (C-Phycocyanin from T. elongatus)
分子名称: C-phycocyanin alpha chain, C-phycocyanin beta chain, PHYCOCYANOBILIN
著者Fromme, R, Ishchenko, A, Metz, M, Roy-Chowdhury, S, Basu, S, Boutet, S, Fromme, P, White, T.A, Barty, A, Spence, J.C.H, Weierstall, U, Liu, W, Cherezov, V.
登録日2015-04-28
公開日2015-08-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Serial femtosecond crystallography of soluble proteins in lipidic cubic phase.
IUCrJ, 2, 2015
6E5D
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Crystal structure of LpqN involved in cell envelope biogenesis of Mycobacterium tuberculosis
分子名称: Lipid binding protein LpqN
著者Rajavel, M, Su, C.C, Yu, E.W.
登録日2018-07-20
公開日2019-07-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and functional evidence that lipoprotein LpqN supports cell envelope biogenesis inMycobacterium tuberculosis.
J.Biol.Chem., 294, 2019
1IQB
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Crystal Structure of Urtica dioica Agglutinin Isolectin I
分子名称: AGGLUTININ ISOLECTIN I, ZINC ION
著者Harata, K, Schubert, W.D, Muraki, M.
登録日2001-07-15
公開日2001-11-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of Urtica dioica agglutinin isolectin I: dimer formation mediated by two zinc ions bound at the sugar-binding site.
Acta Crystallogr.,Sect.D, 57, 2001
6IDF
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Cryo-EM structure of gamma secretase in complex with a Notch fragment
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Yang, G, Zhou, R, Zhou, Q, Guo, X, Yan, C, Ke, M, Lei, J, Shi, Y.
登録日2018-09-09
公開日2018-12-26
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structural basis of Notch recognition by human gamma-secretase
Nature, 565, 2019
3LO5
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Crystal Structure of the dominant negative S17N mutant of Ras
分子名称: CALCIUM ION, GTPase HRas, GUANOSINE-5'-DIPHOSPHATE, ...
著者Nassar, N, Singh, K, Garcia-Diaz, M.
登録日2010-02-03
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.568 Å)
主引用文献Structure of the Dominant Negative S17N Mutant of Ras
Biochemistry, 49, 2010
4KA4
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Crystal structure of a proteolytically defined Zbeta domain of human DAI (ZBP1, DLM-1)
分子名称: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), Z-DNA-binding protein 1
著者Athanasiadis, A, de Rosa, M, De Sanctis, D.
登録日2013-04-22
公開日2013-05-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of a proteolytically defined Zbeta domain of human DAI (ZBP1, DLM-1)
To be Published
6E5L
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Crystal structure of human cellular retinol binding protein 1 in complex with abnormal-cannabidiol (abn-CBD)
分子名称: (1'R,2'R)-5'-methyl-6-pentyl-2'-(prop-1-en-2-yl)-1',2',3',4'-tetrahydro[1,1'-biphenyl]-2,4-diol, Retinol-binding protein 1
著者Silvaroli, J.A, Banerjee, S, Kiser, P.D, Golczak, M.
登録日2018-07-20
公開日2019-02-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Abnormal Cannabidiol Modulates Vitamin A Metabolism by Acting as a Competitive Inhibitor of CRBP1.
Acs Chem.Biol., 14, 2019
4KAC
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X-Ray Structure of the complex HaloTag2 with HALTS. Northeast Structural Genomics Consortium (NESG) Target OR150.
分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, AMMONIUM ION, Haloalkane dehalogenase, ...
著者Kuzin, A, Lew, S, Neklesa, T.K, Noblin, D, Seetharaman, J, Maglaqui, M, Xiao, R, Kohan, E, Wang, H, Everett, J.K, Acton, T.B, Kornhaber, G, Montelione, G.T, Crews, C.M, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2013-04-22
公開日2013-06-05
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.223 Å)
主引用文献Northeast Structural Genomics Consortium Target OR150
To be Published
3LPU
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HIV integrase
分子名称: (2S)-2-(6-chloro-2-methyl-4-phenylquinolin-3-yl)pentanoic acid, 2-[3-[3-(2-hydroxyethoxy)propoxy]propoxy]ethanol, CALCIUM ION, ...
著者Nicolet, S, Christ, F, Voet, A, Marchand, A, Strelkov, S.V, de Maeyer, M, Chaltin, P, Debyzer, Z.
登録日2010-02-06
公開日2010-05-12
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Rational design of small-molecule inhibitors of the LEDGF/p75-integrase interaction and HIV replication.
Nat.Chem.Biol., 6, 2010
6E5S
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Crystal structure of holo retinal-bound domain-swapped dimer Q108K:T51D mutant of human Cellular Retinol Binding Protein II
分子名称: RETINAL, Retinol-binding protein 2
著者Nosrati, M, Ghanbarpour, A, Geiger, J.
登録日2018-07-22
公開日2019-07-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.061 Å)
主引用文献Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.
J.Am.Chem.Soc., 141, 2019
2MFQ
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NMR solution structures of FRS2a PTB domain with neurotrophin receptor TrkB
分子名称: BDNF/NT-3 growth factors receptor, Fibroblast growth factor receptor substrate 2
著者Zeng, L, Zhou, M.
登録日2013-10-18
公開日2014-03-05
最終更新日2014-06-25
実験手法SOLUTION NMR
主引用文献Structural insights into FRS2 alpha PTB domain recognition by neurotrophin receptor TrkB.
Proteins, 82, 2014
7ZC2
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Dipeptide and tripeptide Permease C (DtpC)
分子名称: Amino acid/peptide transporter
著者Killer, M, Finocchio, G, Pardon, E, Steyaert, J, Loew, C.
登録日2022-03-25
公開日2022-07-06
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.72 Å)
主引用文献Cryo-EM Structure of an Atypical Proton-Coupled Peptide Transporter: Di- and Tripeptide Permease C.
Front Mol Biosci, 9, 2022
7Z1M
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Structure of yeast RNA Polymerase III Elongation Complex (EC)
分子名称: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ...
著者Girbig, M, Mueller, C.W.
登録日2022-02-24
公開日2022-08-31
最終更新日2022-09-21
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals.
Cell Rep, 40, 2022
1IO6
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GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2 (GRB2) C-TERMINAL SH3 DOMAIN COMPLEXED WITH A LIGAND PEPTIDE (NMR, MINIMIZED MEAN STRUCTURE)
分子名称: A LIGAND PEPTIDE, GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2
著者Kawasaki, M, Ogura, K, Hatanaka, H, Inagaki, F.
登録日2001-01-25
公開日2001-02-14
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of the C-Terminal SH3 Domain of Grb2 Complexed with a Ligand Peptide: A Ligand Exchange Model of the SH3 Domain
To be Published
6IAR
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Tricyclic indazoles a novel class of selective estrogen receptor degrader antagonists
分子名称: 3-[4-[(6~{R})-7-(2-methylpropyl)-3,6,8,9-tetrahydropyrazolo[4,3-f]isoquinolin-6-yl]phenyl]propanoic acid, Estrogen receptor
著者Scott, J.S, Bailey, A, Buttar, D, Carbajo, R.J, Curwen, J, Davies, R.D.M, Degorce, S.L, Donald, C, Gangl, E, Greenwood, R, Groombridge, S.D, Johnson, T, Lamont, S, Lawson, M, Lister, A, Morrow, C, Moss, T, Pink, J.H, Polanski, R.
登録日2018-11-27
公開日2019-01-23
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Tricyclic Indazoles-A Novel Class of Selective Estrogen Receptor Degrader Antagonists.
J.Med.Chem., 62, 2019
7Z9L
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Phen-DC3 intercalation causes hybrid-to-antiparallel transformation of human telomeric DNA G-quadruplex
分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3'), N2,N9-bis(1-methylquinolin-3-yl)-1,10-phenanthroline-2,9-dicarboxamide
著者Ghosh, A, Trajkovski, M, Teulade-Fichou, M.P, Gabelica, V, Plavec, J.
登録日2022-03-21
公開日2022-08-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Phen-DC 3 Induces Refolding of Human Telomeric DNA into a Chair-Type Antiparallel G-Quadruplex through Ligand Intercalation.
Angew.Chem.Int.Ed.Engl., 61, 2022
3LRQ
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Crystal structure of the U-box domain of human ubiquitin-protein ligase (E3), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4604D.
分子名称: E3 ubiquitin-protein ligase TRIM37, ZINC ION
著者Kuzin, A, Chen, Y, Seetharaman, J, Mao, M, Xiao, R, Ciccosanti, C, Shastry, R, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
登録日2010-02-11
公開日2010-03-23
最終更新日2019-07-17
実験手法X-RAY DIFFRACTION (2.292 Å)
主引用文献E3 UBIQUITIN-PROTEIN LIGASE RING DOMAIN FROM HUMAN TRIPARTITE MOTIF-CONTAINING PROTEIN 37 (TRIM37), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4604D.
To be Published
6IBG
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Bacteriophage G20c portal protein crystal structure for construct with intact N-terminus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Portal protein
著者Bayfield, O.W, Klimuk, E, Winkler, D.C, Hesketh, E.L, Chechik, M, Cheng, N, Dykeman, E.C, Minakhin, L, Ranson, N.A, Severinov, K, Steven, A.C, Antson, A.A.
登録日2018-11-30
公開日2019-01-23
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Cryo-EM structure and in vitro DNA packaging of a thermophilic virus with supersized T=7 capsids.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
1IPE
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TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
著者Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-09
公開日2003-06-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1IQ7
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Ovotransferrin, C-Terminal Lobe, Apo Form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ovotransferrin, SULFATE ION
著者Mizutani, K, Muralidhara, B.K, Yamashita, H, Tabata, S, Mikami, B, Hirose, M.
登録日2001-07-06
公開日2001-11-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Anion-mediated Fe3+ release mechanism in ovotransferrin C-lobe: a structurally identified SO4(2-) binding site and its implications for the kinetic pathway.
J.Biol.Chem., 276, 2001

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件を2024-09-04に公開中

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