Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

5TAJ
DownloadVisualize
BU of 5taj by Molmil
Conformational Sampling Differences across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin
分子名称: CALCIUM ION, LYSINE, Thermolysin, ...
著者Dong, M, Bahnson, B.J.
登録日2016-09-10
公開日2017-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.031 Å)
主引用文献Conformational Sampling Differences across the Arrhenius Plot Biphasic Break Point at Ambient Temperature in the Enzyme Thermolysin
To Be Published
2Z5D
DownloadVisualize
BU of 2z5d by Molmil
Human ubiquitin-conjugating enzyme E2 H
分子名称: SODIUM ION, Ubiquitin-conjugating enzyme E2 H
著者Bochkarev, A, Cui, H, Walker, J.R, Newman, E.M, Mackenzie, F, Battaile, K.P, Sundstrom, M, Arrowsmith, C, Edwards, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2007-07-06
公開日2007-10-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen.
MOL.CELL PROTEOMICS, 11, 2012
7RSF
DownloadVisualize
BU of 7rsf by Molmil
Acetylornithine deacetylase from Escherichia coli
分子名称: Acetylornithine deacetylase, CHLORIDE ION, GLYCEROL, ...
著者Osipiuk, J, Endres, M, Becker, D.P, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2021-08-11
公開日2021-08-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Acetylornithine deacetylase from Escherichia coli
To Be Published
8DBU
DownloadVisualize
BU of 8dbu by Molmil
E. coli ATP synthase imaged in 10mM MgATP State2 "down" Fo classified
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Sobti, M, Stewart, A.G.
登録日2022-06-14
公開日2023-01-25
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP.
Commun Biol, 6, 2023
5C9M
DownloadVisualize
BU of 5c9m by Molmil
The structure of oxidized rat cytochrome c (T28A) at 1.362 angstroms resolution.
分子名称: Cytochrome c, somatic, HEME C, ...
著者Edwards, B.F.P, Mahapatra, G, Vaishnav, A.A, Brunzelle, J.S, Huttemann, M.
登録日2015-06-28
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.362 Å)
主引用文献The structure of oxidized rat cytochrome c (T28A) at 1.362 angstroms resolution.
To Be Published
5IK3
DownloadVisualize
BU of 5ik3 by Molmil
Crystal structure of anti-gliadin 1002-1E03 Fab fragment
分子名称: 1E03 Fab fragment heavy chain, 1E03 Fab fragment light chain, SULFATE ION
著者Snir, O, Chen, X, Gidoni, M, du Pre, M.F, Zhao, Y, Steinsbo, O, Lundin, K.E, Yaari, G, Sollid, L.M.
登録日2016-03-03
公開日2017-03-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Stereotyped antibody responses target posttranslationally modified gluten in celiac disease.
JCI Insight, 2, 2017
5IKH
DownloadVisualize
BU of 5ikh by Molmil
Tobacco 5-epi-aristolochene synthase M4 mutant with (-)-premnaspirodiene
分子名称: (2R,5S,10R)-6,10-dimethyl-2-(prop-1-en-2-yl)spiro[4.5]dec-6-ene, 5-epi-aristolochene synthase, MAGNESIUM ION
著者Koo, H.J, O'Maille, P.E, Louie, G.V, Bowman, M, Noel, J.P.
登録日2016-03-03
公開日2016-10-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Biosynthetic potential of sesquiterpene synthases: product profiles of Egyptian Henbane premnaspirodiene synthase and related mutants.
J.Antibiot., 69, 2016
5TF0
DownloadVisualize
BU of 5tf0 by Molmil
Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein from Bacteroides intestinalis
分子名称: 1,2-ETHANEDIOL, Glycosyl hydrolase family 3 N-terminal domain protein, MAGNESIUM ION
著者Kim, Y, Hatzos-Skintges, C, Endres, M, Babnigg, G, Joachimiak, A, MCSG, Midwest Center for Structural Genomics (MCSG)
登録日2016-09-23
公開日2016-10-05
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.2021 Å)
主引用文献Crystal Structure of Glycosil Hydrolase Family 3 N-Terminal Domain Protein from Bacteroides intestinalis
To Be Published, 2016
8DBQ
DownloadVisualize
BU of 8dbq by Molmil
E. coli ATP synthase imaged in 10mM MgATP State1 "half-up" Fo classified
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Sobti, M, Stewart, A.G.
登録日2022-06-14
公開日2023-01-25
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP.
Commun Biol, 6, 2023
5IB7
DownloadVisualize
BU of 5ib7 by Molmil
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G.
登録日2016-02-22
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix.
Nucleic Acids Res., 44, 2016
7RSK
DownloadVisualize
BU of 7rsk by Molmil
The crystal structure from microfluidic crystals of glycosyl hydrolase family 2 (GH2) member from Bacteroides cellulosilyticus
分子名称: Glycosyl hydrolase family 2, sugar binding domain protein
著者Kim, Y, Nocek, B, Endres, M, Joachimiak, G, Johnson, J, Babnigg, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2021-08-11
公開日2021-08-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The crystal structure from microfluidic crystals of glycosyl hydrolase family 2 (GH2) member from Bacteroides cellulosilyticus
To Be Published
5IL8
DownloadVisualize
BU of 5il8 by Molmil
Tobacco 5-epi-aristolochene synthase with MOPSO buffer molecule and Ca2+ ions
分子名称: (2R)-2-hydroxy-3-(morpholin-4-yl)propane-1-sulfonic acid, (2S)-2-hydroxy-3-(morpholin-4-yl)propane-1-sulfonic acid, 5-epi-aristolochene synthase, ...
著者Koo, H.J, Louie, G.V, Xu, Y, Bowman, M, Noel, J.P.
登録日2016-03-04
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Small-molecule buffer components can directly affect terpene-synthase activity by interacting with the substrate-binding site of the enzyme
To Be Published
8DBV
DownloadVisualize
BU of 8dbv by Molmil
E. coli ATP synthase imaged in 10mM MgATP State3 "down
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Sobti, M, Stewart, A.G.
登録日2022-06-14
公開日2023-01-25
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP.
Commun Biol, 6, 2023
5ILJ
DownloadVisualize
BU of 5ilj by Molmil
Tobacco 5-epi-aristolochene synthase with BIS-TRIS buffer molecule
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5-epi-aristolochene synthase
著者Koo, H.J, Louie, G.V, Xu, Y, Bowman, M, Noel, J.P.
登録日2016-03-04
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Small-molecule buffer components can directly affect terpene-synthase activity by interacting with the substrate-binding site of the enzyme
To Be Published
5ILZ
DownloadVisualize
BU of 5ilz by Molmil
Tobacco 5-epi-aristolochene synthase with BIS-TRIS propane (BTP) buffer molecule
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5-epi-aristolochene synthase
著者Koo, H.J, Louie, G.V, Xu, Y, Bowman, M, Noel, J.P.
登録日2016-03-05
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Small-molecule buffer components can directly affect terpene-synthase activity by interacting with the substrate-binding site of the enzyme
To Be Published
5FN7
DownloadVisualize
BU of 5fn7 by Molmil
Crystal structure of human CD45 extracellular region, domains d1-d2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE C
著者Chang, V.T, Fernandes, R.A, Ganzinger, K.A, Lee, S.F, Siebold, C, McColl, J, Jonsson, P, Palayret, M, Harlos, K, Coles, C.H, Jones, E.Y, Lui, Y, Huang, E, Gilbert, R.J.C, Klenerman, D, Aricescu, A.R, Davis, S.J.
登録日2015-11-10
公開日2016-03-23
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Initiation of T Cell Signaling by Cd45 Segregation at 'Close Contacts'.
Nat.Immunol., 17, 2016
7K1L
DownloadVisualize
BU of 7k1l by Molmil
Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2 in the Complex with Uridine-2',3'-Vanadate
分子名称: 1,2-ETHANEDIOL, ACETATE ION, SULFATE ION, ...
著者Kim, Y, Maltseva, N, Jedrzejczak, R, Endres, M, Welk, L, Chang, C, Michalska, K, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-09-07
公開日2020-09-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Tipiracil binds to uridine site and inhibits Nsp15 endoribonuclease NendoU from SARS-CoV-2.
Commun Biol, 4, 2021
8CX2
DownloadVisualize
BU of 8cx2 by Molmil
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, Elongin-B, ...
著者Li, Y, Langley, C, Azumaya, C.M, Echeverria, I, Chesarino, N.M, Emerman, M, Cheng, Y, Gross, J.D.
登録日2022-05-19
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The structural basis for HIV-1 Vif antagonism of human APOBEC3G.
Nature, 615, 2023
5FTF
DownloadVisualize
BU of 5ftf by Molmil
Crystal structure of Pif1 helicase from Bacteroides double mutant L95C-I339C
分子名称: ADENOSINE-5'-DIPHOSPHATE, TPR DOMAIN PROTEIN
著者Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G.
登録日2016-01-13
公開日2016-02-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.412 Å)
主引用文献Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding
Nucleic Acids Res., 44, 2016
5FTN
DownloadVisualize
BU of 5ftn by Molmil
Cryo-EM structure of human p97 bound to ATPgS (Conformation III)
分子名称: MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
著者Banerjee, S, Bartesaghi, A, Merk, A, Rao, P, Bulfer, S.L, Yan, Y, Green, N, Mroczkowski, B, Neitz, R.J, Wipf, P, Falconieri, V, Deshaies, R.J, Milne, J.L.S, Huryn, D, Arkin, M, Subramaniam, S.
登録日2016-01-14
公開日2016-01-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献2.3 A Resolution Cryo-Em Structure of Human P97 and Mechanism of Allosteric Inhibition
Science, 351, 2016
5IQW
DownloadVisualize
BU of 5iqw by Molmil
1.95A resolution structure of Apo HasAp (R33A) from Pseudomonas aeruginosa
分子名称: ACETATE ION, CADMIUM ION, Heme acquisition protein HasAp
著者Kumar, R, Lovell, S, Battaile, K.P, Yao, H, Rivera, M.
登録日2016-03-11
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Replacing Arginine 33 for Alanine in the Hemophore HasA from Pseudomonas aeruginosa Causes Closure of the H32 Loop in the Apo-Protein.
Biochemistry, 55, 2016
5IRO
DownloadVisualize
BU of 5iro by Molmil
Crystal structure of a complex between the Human adenovirus type 4 E3-19K protein and MHC class molecule HLA-A2/TAX
分子名称: Beta-2-microglobulin, E3 19 kDa protein, HLA class I histocompatibility antigen, ...
著者Li, L, Bouvier, M.
登録日2016-03-14
公開日2016-08-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structure of the Adenovirus Type 4 (Species E) E3-19K/HLA-A2 Complex Reveals Species-Specific Features in MHC Class I Recognition.
J Immunol., 197, 2016
1A5T
DownloadVisualize
BU of 1a5t by Molmil
CRYSTAL STRUCTURE OF THE DELTA PRIME SUBUNIT OF THE CLAMP-LOADER COMPLEX OF ESCHERICHIA COLI DNA POLYMERASE III
分子名称: DELTA PRIME, ZINC ION
著者Guenther, B, Onrust, R, Sali, A, O'Donnell, M, Kuriyan, J.
登録日1998-02-18
公開日1998-05-27
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 91, 1997
8CX0
DownloadVisualize
BU of 8cx0 by Molmil
Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex
分子名称: Core-binding factor subunit beta, DNA dC->dU-editing enzyme APOBEC-3G, Elongin-B, ...
著者Li, Y, Langley, C, Azumaya, C.M, Echeverria, I, Chesarino, N.M, Emerman, M, Cheng, Y, Gross, J.D.
登録日2022-05-19
公開日2023-02-15
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献The structural basis for HIV-1 Vif antagonism of human APOBEC3G.
Nature, 615, 2023
5IQX
DownloadVisualize
BU of 5iqx by Molmil
1.05A resolution structure of Holo HasAp (R33A) from Pseudomonas aeruginosa
分子名称: D-MALATE, Heme acquisition protein HasAp, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Kumar, R, Lovell, S, Battaile, K.P, Yao, H, Rivera, M.
登録日2016-03-11
公開日2016-04-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Replacing Arginine 33 for Alanine in the Hemophore HasA from Pseudomonas aeruginosa Causes Closure of the H32 Loop in the Apo-Protein.
Biochemistry, 55, 2016

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon