Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

5JSP
DownloadVisualize
BU of 5jsp by Molmil
New Mechanistic Insight from Substrate and Product Bound Structures of the Metal-dependent Dimethylsulfoniopropionate Lyase DddQ
分子名称: 3-(dimethyl-lambda~4~-sulfanyl)propanoic acid, BROMIDE ION, CHLORIDE ION, ...
著者Brummett, A.E, Dey, M.
登録日2016-05-09
公開日2017-02-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ.
Biochemistry, 55, 2016
5TEJ
DownloadVisualize
BU of 5tej by Molmil
Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Vibrio vulnificus with 2,5 Furan Dicarboxylic and NADH
分子名称: 2,5 Furan Dicarboxylic Acid, 4-hydroxy-tetrahydrodipicolinate reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Mank, N, Arnette, K, Klapper, V, Chruszcz, M.
登録日2016-09-21
公開日2017-10-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus.
Biochim Biophys Acta Gen Subj, 1865, 2021
5G6U
DownloadVisualize
BU of 5g6u by Molmil
Crystal structure of langerin carbohydrate recognition domain with GlcNS6S
分子名称: 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
著者Porkolab, V, Chabrol, E, Varga, N, Ordanini, S, Sutkeviciute, I, Thepaut, M, Bernardi, A, Fieschi, F.
登録日2016-07-21
公開日2018-02-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.844 Å)
主引用文献Rational-Differential Design of Highly Specific Glycomimetic Ligands: Targeting DC-SIGN and Excluding Langerin Recognition.
ACS Chem. Biol., 13, 2018
2NSQ
DownloadVisualize
BU of 2nsq by Molmil
Crystal structure of the C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase NEDD4-like protein, GLYCEROL
著者Walker, J.R, Avvakumov, G.V, Xue, S, Butler-Cole, C, Finerty Jr, P.J, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2006-11-06
公開日2006-12-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The C2 domain of the human E3 ubiquitin-protein ligase NEDD4-like protein
To be Published
8CTH
DownloadVisualize
BU of 8cth by Molmil
Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex
分子名称: Phe-tRNA, S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine-N(7)-)-methyltransferase, ...
著者Li, J, Wang, L, Fontana, P, Hunkeler, M, Roy-Burman, S.S, Wu, H, Fishcer, E.S, Gregory, R.I.
登録日2022-05-14
公開日2022-12-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis of regulated m 7 G tRNA modification by METTL1-WDR4.
Nature, 613, 2023
8CTI
DownloadVisualize
BU of 8cti by Molmil
Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex
分子名称: tRNA (guanine-N(7)-)-methyltransferase, tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4, tRNA-Val-TAC-2-1
著者Li, J, Wang, L, Fontana, P, Hunkeler, M, Roy-Burman, S.S, Wu, H, Fischer, E.S, Gregory, R.I.
登録日2022-05-14
公開日2022-12-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural basis of regulated m 7 G tRNA modification by METTL1-WDR4.
Nature, 613, 2023
5ILK
DownloadVisualize
BU of 5ilk by Molmil
Tobacco 5-epi-aristolochene synthase with partial density from MOPSO or BIS-TRIS buffer molecule in the active site
分子名称: 5-epi-aristolochene synthase
著者Koo, H.J, Louie, G.V, Xu, Y, Bowman, M, Noel, J.P.
登録日2016-03-04
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Small-molecule buffer components can directly affect terpene-synthase activity by interacting with the substrate-binding site of the enzyme
To Be Published
3NTJ
DownloadVisualize
BU of 3ntj by Molmil
Redox regulation of Plasmodium falciparum ornithine delta-aminotransferase
分子名称: Ornithine aminotransferase, SULFATE ION
著者Fritz-Wolf, K, Jortzik, E, Stumpf, M, Becker, K.
登録日2010-07-05
公開日2010-08-04
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Redox regulation of Plasmodium falciparum ornithine delta-aminotransferase
J.Mol.Biol., 402, 2010
7QBH
DownloadVisualize
BU of 7qbh by Molmil
Selenocarbamates as a novel prodrug-based approach towards Carbonic Anhydrase inhibition (hCA II)
分子名称: Carbonic anhydrase 2, ZINC ION, phenylmethaneselenol
著者Angeli, A, Ferraroni, M.
登録日2021-11-19
公開日2022-03-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.223 Å)
主引用文献Selenocarbamates As a Prodrug-Based Approach to Carbonic Anhydrase Inhibition.
Chemmedchem, 17, 2022
5ILY
DownloadVisualize
BU of 5ily by Molmil
Tobacco 5-epi-aristolochene synthase with BIS-TRIS buffer molecule and diphosphate (PPi)
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5-epi-aristolochene synthase, DIPHOSPHATE, ...
著者Koo, H.J, Louie, G.V, Xu, Y, Bowman, M, Noel, J.P.
登録日2016-03-05
公開日2017-03-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Small-molecule buffer components can directly affect terpene-synthase activity by interacting with the substrate-binding site of the enzyme
To Be Published
7Q7X
DownloadVisualize
BU of 7q7x by Molmil
Crystal structure of the methyltransferase-ribozyme 1 (with 1-methyl-adenosine)
分子名称: GUANINE, MAGNESIUM ION, RNA 1, ...
著者Mieczkowski, M, Hoebartner, C.
登録日2021-11-09
公開日2022-03-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
7Q80
DownloadVisualize
BU of 7q80 by Molmil
Crystal structure of the methyltransferase-ribozyme 1, no Magnesium condition (with 1-methyl-adenosine)
分子名称: GUANINE, RNA 1, RNA 2, ...
著者Mieczkowski, M, Hoebartner, C.
登録日2021-11-09
公開日2022-03-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Structure and mechanism of the methyltransferase ribozyme MTR1.
Nat.Chem.Biol., 18, 2022
5GMT
DownloadVisualize
BU of 5gmt by Molmil
Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai
分子名称: Alginate lyase
著者Qin, H.-M, Miyakawa, T, Nakamura, A, Tanokura, M.
登録日2016-07-16
公開日2017-01-04
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structure and Polymannuronate Specificity of a Eukaryotic Member of Polysaccharide Lyase Family 14.
J. Biol. Chem., 292, 2017
3JYZ
DownloadVisualize
BU of 3jyz by Molmil
Crystal structure of Pseudomonas aeruginosa (strain: Pa110594) typeIV pilin in space group P41212
分子名称: SULFATE ION, Type IV pilin structural subunit
著者Nguyen, Y, Jackson, S.G, Aidoo, F, Junop, M.S, Burrows, L.L.
登録日2009-09-22
公開日2009-11-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural characterization of Novel Pseudomonas aeruginosa type IV pilins.
J.Mol.Biol., 395, 2010
7QA5
DownloadVisualize
BU of 7qa5 by Molmil
Solution structure of the C terminal domain of MgtC (PA4635) from Pseudomonas aeruginosa
分子名称: Protein MgtC
著者Barthe, P, Cohen-Gonsaud, M.
登録日2021-11-16
公開日2022-05-04
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution structure of the C terminal domain of MgtC (PA4635) from Pseudomonas aeruginosa
To Be Published
7QEM
DownloadVisualize
BU of 7qem by Molmil
bacterial IMPDH chimera
分子名称: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase
著者Labesse, G, Gelin, M, Gedeon, A, Haouz, A, Munier-Lehmann, H.
登録日2021-12-03
公開日2023-06-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Insight into the role of the Bateman domain at the molecular and physiological levels through engineered IMP dehydrogenases.
Protein Sci., 32, 2023
7QDX
DownloadVisualize
BU of 7qdx by Molmil
bacterial IMPDH chimera
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Inosine-5'-monophosphate dehydrogenase, MAGNESIUM ION
著者Labesse, G, Gelin, M, Munier-Lehmann, H, Gedeon, A, Haouz, A.
登録日2021-11-30
公開日2023-06-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Insight into the role of the Bateman domain at the molecular and physiological levels through engineered IMP dehydrogenases.
Protein Sci., 32, 2023
5T7V
DownloadVisualize
BU of 5t7v by Molmil
Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Belousoff, M.J, Lithgow, T, Eyal, Z, Yonath, A, Radjainia, M.
登録日2016-09-06
公開日2017-05-31
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural Basis for Linezolid Binding Site Rearrangement in theStaphylococcus aureusRibosome.
MBio, 8, 2017
6FX4
DownloadVisualize
BU of 6fx4 by Molmil
Disulfide between E3 HECT ligase Smurf2 and Ubiquitin G76C
分子名称: E3 ubiquitin-protein ligase SMURF2, GLYCEROL, Polyubiquitin-B
著者Jaeckl, M, Holdermann, I, Wiesner, S.
登録日2018-03-08
公開日2018-07-11
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献beta-Sheet Augmentation Is a Conserved Mechanism of Priming HECT E3 Ligases for Ubiquitin Ligation.
J. Mol. Biol., 430, 2018
5TBU
DownloadVisualize
BU of 5tbu by Molmil
Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase complexed with Hypoxanthine
分子名称: DIMETHYL SULFOXIDE, HYPOXANTHINE, Purine nucleoside phosphorylase
著者Faheem, M, Torini, J.R, Romanello, L, Brandao-Neto, J, Pereira, H.M.
登録日2016-09-13
公開日2017-10-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The molecular structure of Schistosoma mansoni PNP isoform 2 provides insights into the nucleoside selectivity of PNPs.
PLoS ONE, 13, 2018
5TGM
DownloadVisualize
BU of 5tgm by Molmil
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate), ...
著者Melnikov, S, Mailliot, J, Yusupov, M.
登録日2016-09-28
公開日2017-01-18
最終更新日2022-12-07
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Molecular insights into protein synthesis with proline residues.
EMBO Rep., 17, 2016
8CUG
DownloadVisualize
BU of 8cug by Molmil
Synthetic epi-Novo29 (2R,3S), synchrotron structure
分子名称: ACETATE ION, Synthetic epi-Novo29 (2R,3S)
著者Kreutzer, A.G, Li, X, Krumberger, M, Nowick, J.S.
登録日2022-05-17
公開日2023-01-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.131 Å)
主引用文献Synthesis and Stereochemical Determination of the Peptide Antibiotic Novo29.
J.Org.Chem., 88, 2023
5T4Q
DownloadVisualize
BU of 5t4q by Molmil
Autoinhibited E. coli ATP synthase state 3
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Sobti, M, Smits, C, Wong, A.S.W, Ishmukhametov, R, Stock, D, Sandin, S, Stewart, A.G.
登録日2016-08-29
公開日2017-01-04
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (8.53 Å)
主引用文献Cryo-EM structures of the autoinhibitedE. coliATP synthase in three rotational states.
Elife, 5, 2016
8A8G
DownloadVisualize
BU of 8a8g by Molmil
ATP sulfurylase from Methanothermococcus thermolithotrophicus - orthorhombic form
分子名称: ATP sulfurylase from Methanothermococcus thermolithotrophicus, GLYCEROL, ZINC ION
著者Jespersen, M, Wagner, T.
登録日2022-06-23
公開日2023-04-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Assimilatory sulfate reduction in the marine methanogen Methanothermococcus thermolithotrophicus.
Nat Microbiol, 8, 2023
8CUF
DownloadVisualize
BU of 8cuf by Molmil
Synthetic epi-Novo29 (2R,3S), X-ray diffractometer structure
分子名称: ACETATE ION, IODIDE ION, Synthetic epi-Novo29 (2R,3S)
著者Kreutzer, A.G, Li, X, Krumberger, M, Nowick, J.S.
登録日2022-05-17
公開日2023-01-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Synthesis and Stereochemical Determination of the Peptide Antibiotic Novo29.
J.Org.Chem., 88, 2023

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon