Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51689 件

1U19
DownloadVisualize
BU of 1u19 by Molmil
Crystal Structure of Bovine Rhodopsin at 2.2 Angstroms Resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
著者Okada, T, Sugihara, M, Bondar, A.N, Elstner, M, Entel, P, Buss, V.
登録日2004-07-15
公開日2004-10-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure
J.Mol.Biol., 342, 2004
1CCD
DownloadVisualize
BU of 1ccd by Molmil
REFINED STRUCTURE OF RAT CLARA CELL 17 KDA PROTEIN AT 3.0 ANGSTROMS RESOLUTION
分子名称: CLARA CELL 17 kD PROTEIN, SULFATE ION
著者Umland, T.C, Swaminathan, S, Furey, W, Singh, G, Pletcher, J, Sax, M.
登録日1991-09-17
公開日1994-01-31
最終更新日2017-11-29
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Refined structure of rat Clara cell 17 kDa protein at 3.0 A resolution.
J.Mol.Biol., 224, 1992
6VPU
DownloadVisualize
BU of 6vpu by Molmil
1.90 Angstrom Resolution Crystal Structure Phosphoadenosine Phosphosulfate Reductase (CysH) from Vibrio vulnificus
分子名称: DI(HYDROXYETHYL)ETHER, HEXAETHYLENE GLYCOL, Phosphoadenosine phosphosulfate reductase, ...
著者Minasov, G, Shuvalova, L, Dubrovska, I, Wiersum, G, Endres, M, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-02-04
公開日2021-02-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献1.90 Angstrom Resolution Crystal Structure Phosphoadenosine Phosphosulfate Reductase (CysH) from Vibrio vulnificus
To Be Published
6NI7
DownloadVisualize
BU of 6ni7 by Molmil
Pseudomonas fluorescens isocyanide hydratase at 277 K
分子名称: Isonitrile hydratase InhA
著者Wilson, M.A, Dasgupta, M, van den Bedem, H.
登録日2018-12-26
公開日2019-11-20
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis.
Proc.Natl.Acad.Sci.USA, 116, 2019
6FQ5
DownloadVisualize
BU of 6fq5 by Molmil
Class 1 : canonical nucleosome
分子名称: DNA (147-MER), Histone H2A, Histone H2B, ...
著者Bilokapic, S, Halic, M.
登録日2018-02-13
公開日2018-04-18
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
8R79
DownloadVisualize
BU of 8r79 by Molmil
The D2 domain of human DTX3L
分子名称: E3 ubiquitin-protein ligase DTX3L, SULFATE ION
著者Vela-Rodriguez, C, Lehtio, L, Maksimainen, M, Duman, R, Wagner, A, Glumoff, T.
登録日2023-11-24
公開日2023-12-27
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Oligomerisation mediated by the D2 domain of DTX3L is critical for DTX3L-PARP9 reading function of mono-ADP-ribosylated androgen receptor.
Biorxiv, 2023
6VPW
DownloadVisualize
BU of 6vpw by Molmil
1.90 Angstrom Resolution Crystal Structure Chemotaxis protein CheX from Vibrio vulnificus
分子名称: Chemotaxis protein CheX
著者Minasov, G, Shuvalova, L, Kiryukhina, O, Wiersum, G, Endres, M, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-02-04
公開日2021-02-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献1.90 Angstrom Resolution Crystal Structure Chemotaxis protein CheX from Vibrio vulnificus
To Be Published
7TNT
DownloadVisualize
BU of 7tnt by Molmil
The tubulin-based conoid from detergent-extract Toxoplasma gondii cells
分子名称: Tubulin alpha chain, Tubulin beta chain
著者Sun, S.Y, Pintilie, G.D, Chen, M, Chiu, W.
登録日2022-01-21
公開日2022-06-22
実験手法ELECTRON MICROSCOPY (9.3 Å)
主引用文献Cryo-ET of Toxoplasma parasites gives subnanometer insight into tubulin-based structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
7BRD
DownloadVisualize
BU of 7brd by Molmil
Crystal structure of Peptidyl-tRNA hydrolase from Klebsiella pneumoniae
分子名称: 1,2-ETHANEDIOL, ACETATE ION, BETA-MERCAPTOETHANOL, ...
著者Mundra, S, Zohib, M, Pal, R.K, Biswal, B.K, Arora, A.
登録日2020-03-27
公開日2021-03-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.892 Å)
主引用文献Structural and functional characterization of peptidyl-tRNA hydrolase from Klebsiella pneumoniae.
Biochim Biophys Acta Proteins Proteom, 1869, 2021
7TNQ
DownloadVisualize
BU of 7tnq by Molmil
The symmetry-released subpellicular microtubule map from detergent-extracted Toxoplasma cells
分子名称: Microtubule associated protein SPM1, PDI family protein, Tubulin alpha chain, ...
著者Sun, S.Y, Pintilie, G.D, Chen, M.
登録日2022-01-21
公開日2022-06-22
実験手法ELECTRON MICROSCOPY (8.4 Å)
主引用文献Cryo-ET of Toxoplasma parasites gives subnanometer insight into tubulin-based structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
6FRW
DownloadVisualize
BU of 6frw by Molmil
X-ray structure of the levansucrase from Erwinia tasmaniensis
分子名称: GLYCEROL, Levansucrase (Beta-D-fructofuranosyl transferase), ZINC ION
著者Polsinelli, I, Salomone-Stagni, M, Caliandro, R, Demitri, N, Benini, S.
登録日2018-02-16
公開日2019-02-06
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Comparison of the Levansucrase from the epiphyte Erwinia tasmaniensis vs its homologue from the phytopathogen Erwinia amylovora.
Int. J. Biol. Macromol., 127, 2019
7TNS
DownloadVisualize
BU of 7tns by Molmil
Subpellicular microtubule from detergent-extract Toxoplasma gondii cells
分子名称: Microtubule associated protein SPM1, PDI family protein, Tubulin alpha chain, ...
著者Sun, S.Y, Pintilie, G.D, Chen, M, Chiu, W.
登録日2022-01-21
公開日2022-06-22
実験手法ELECTRON MICROSCOPY (6.7 Å)
主引用文献Cryo-ET of Toxoplasma parasites gives subnanometer insight into tubulin-based structures.
Proc.Natl.Acad.Sci.USA, 119, 2022
1C4L
DownloadVisualize
BU of 1c4l by Molmil
SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
分子名称: RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')
著者Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y.
登録日1999-08-30
公開日2000-08-09
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
6JID
DownloadVisualize
BU of 6jid by Molmil
Human MTHFD2 in complex with Compound 1
分子名称: 5-(4-oxo-2-phenyl-1,5,7,8-tetrahydropyrido[4,3-d]pyrimidine-6(4H)-carbonyl)-1,3-dihydro-2H-2lambda~6~,1-benzothiazole-2,2-dione, Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial, ...
著者Suzuki, M, Matsui, Y, Matsuhashi, N, Kawai, J.
登録日2019-02-20
公開日2019-06-05
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure-Based Design and Synthesis of an Isozyme-Selective MTHFD2 Inhibitor with a Tricyclic Coumarin Scaffold.
Acs Med.Chem.Lett., 10, 2019
5IJL
DownloadVisualize
BU of 5ijl by Molmil
D-family DNA polymerase - DP2 subunit (catalytic subunit)
分子名称: DNA polymerase II large subunit, ZINC ION
著者Sauguet, L, Raia, P, De Larue, M.
登録日2016-03-02
公開日2016-08-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Shared active site architecture between archaeal PolD and multi-subunit RNA polymerases revealed by X-ray crystallography.
Nat Commun, 7, 2016
6JIL
DownloadVisualize
BU of 6jil by Molmil
Crystal structure of D-cycloserine synthetase DcsG
分子名称: ADENOSINE-5'-DIPHOSPHATE, Cycloserine biosynthesis protein DcsG, L(+)-TARTARIC ACID, ...
著者Matoba, Y, Sugiyama, M.
登録日2019-02-22
公開日2019-12-18
最終更新日2020-07-22
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Cyclization mechanism catalyzed by an ATP-grasp enzyme essential for d-cycloserine biosynthesis.
Febs J., 287, 2020
6NOA
DownloadVisualize
BU of 6noa by Molmil
Solution Structure of the RNA element that recruits eIF3 to the 5'-UTR of c-Jun and regulates specialized translation initiation (apical loop)
分子名称: C-JUN SL1
著者Walker, M, Shortridge, M, Varani, G.
登録日2019-01-16
公開日2020-07-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the RNA Specialized Translation Initiation Element that Recruits eIF3 to the 5'-UTR of c-Jun.
J.Mol.Biol., 432, 2020
6NRU
DownloadVisualize
BU of 6nru by Molmil
Crystal Structure of the Alpha-ribazole Phosphatase from Shigella flexneri
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, CobC, ...
著者Kim, Y, Gu, M, Shatsman, S, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2019-01-24
公開日2019-03-06
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.505 Å)
主引用文献Crystal Structure of the Alpha-ribazole Phosphatase from Shigella flexneri
To Be Published
1U5R
DownloadVisualize
BU of 1u5r by Molmil
Crystal Structure of the TAO2 Kinase Domain: Activation and Specifity of a Ste20p MAP3K
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
著者Zhou, T, Raman, M, Gao, Y, Earnest, S, Chen, Z, Machius, M, Cobb, M.H, Goldsmith, E.J.
登録日2004-07-28
公開日2004-10-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of the TAO2 Kinase Domain; Activation and Specificity of a Ste20p MAP3K.
Structure, 12, 2004
6NPQ
DownloadVisualize
BU of 6npq by Molmil
Pseudomonas fluorescens isocyanide hydratase at 298 K XFEL data
分子名称: Isonitrile hydratase InhA
著者Dasgupta, M, van den Bedem, H, Wilson, M.A.
登録日2019-01-18
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis.
Proc.Natl.Acad.Sci.USA, 116, 2019
6PX1
DownloadVisualize
BU of 6px1 by Molmil
Set2 bound to nucleosome
分子名称: DNA (149-MER), Histone H2B 1.1, Histone H3, ...
著者Halic, M, Bilokapic, S.
登録日2019-07-24
公開日2019-08-28
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Nucleosome and ubiquitin position Set2 to methylate H3K36.
Nat Commun, 10, 2019
7ORV
DownloadVisualize
BU of 7orv by Molmil
Non-structural protein 10 (nsp10) from SARS CoV-2 in complex with fragment VT00239
分子名称: CHLORIDE ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
著者Talibov, V.O, Kozielski, F, Sele, C, Lou, J, Dong, D, Wang, Q, Shi, X, Nyblom, M, Rogstam, A, Krojer, T, Knecht, W, Fisher, S.Z.
登録日2021-06-06
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Identification of fragments binding to SARS-CoV-2 nsp10 reveals ligand-binding sites in conserved interfaces between nsp10 and nsp14/nsp16.
Rsc Chem Biol, 3, 2022
3NWB
DownloadVisualize
BU of 3nwb by Molmil
Rat COMT in complex with a fluorinated desoxyribose-containing bisubstrate inhibitor avoids hydroxyl group
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CHLORIDE ION, Catechol O-methyltransferase, ...
著者Ehler, A, Schlatter, D, Stihle, M, Benz, J, Rudolph, M.G.
登録日2010-07-09
公開日2011-08-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Catechol-O-methyltransferase in complex with substituted 3'-deoxyribose bisubstrate inhibitors
Acta Crystallogr.,Sect.D, 68, 2012
7OML
DownloadVisualize
BU of 7oml by Molmil
Bacillus subtilis phosphoglucomutase GlmM (metal bound)
分子名称: MAGNESIUM ION, Phosphoglucosamine mutase
著者Pathania, M, Grundling, A.G, Freemont, P.
登録日2021-05-24
公開日2021-10-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural basis for the inhibition of the Bacillus subtilis c-di-AMP cyclase CdaA by the phosphoglucomutase GlmM.
J.Biol.Chem., 297, 2021
7ORR
DownloadVisualize
BU of 7orr by Molmil
Non-structural protein 10 (nsp10) from SARS CoV-2 in complex with fragment VT00022
分子名称: 4-PHENYL-1H-IMIDAZOLE, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
著者Talibov, V.O, Kozielski, F, Sele, C, Lou, J, Dong, D, Wang, Q, Shi, X, Nyblom, M, Rogstam, A, Krojer, T, Knecht, W, Fisher, S.Z.
登録日2021-06-06
公開日2021-10-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Identification of fragments binding to SARS-CoV-2 nsp10 reveals ligand-binding sites in conserved interfaces between nsp10 and nsp14/nsp16.
Rsc Chem Biol, 3, 2022

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon