Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 52230 results

3OAH
DownloadVisualize
BU of 3oah by Molmil
Structural Characterization of the Dual Glycan Binding Adeno-Associated Virus Serotype 6
Descriptor: 6-AMINOPYRIMIDIN-2(1H)-ONE, 9-(2-deoxy-5-O-phosphono-alpha-D-threo-pentofuranosyl)-9H-purin-6-amine, Capsid protein VP1
Authors:Ng, R, Agbandje-McKenna, M.
Deposit date:2010-08-05
Release date:2011-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural characterization of the dual glycan binding adeno-associated virus serotype 6.
J.Virol., 84, 2010
6HDX
DownloadVisualize
BU of 6hdx by Molmil
Crystal structure of 2-Hydroxyisobutyryl-CoA Ligase (HCL) in the postadenylation state in complex with R3-HIB-AMP
Descriptor: (2R)-3-HYDROXY-2-METHYLPROPANOIC ACID, 2-hydroxyisobutyryl-CoA synthetase, [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] (2~{R})-2-methyl-3-oxidanyl-propanoate
Authors:Zahn, M, Rohwerder, T, Strater, N.
Deposit date:2018-08-20
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of 2-Hydroxyisobutyric Acid-CoA Ligase Reveal Determinants of Substrate Specificity and Describe a Multi-Conformational Catalytic Cycle.
J.Mol.Biol., 431, 2019
6HCI
DownloadVisualize
BU of 6hci by Molmil
Crystal structure of titin M3 domain
Descriptor: SULFATE ION, Titin
Authors:Chatziefthimiou, S.D, Ugurlar, D, Wilmanns, M.
Deposit date:2018-08-15
Release date:2019-08-28
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Structural diversity in the atomic resolution 3D fingerprint of the titin M-band segment.
Plos One, 14, 2019
6HEJ
DownloadVisualize
BU of 6hej by Molmil
Structure of human USP28
Descriptor: SULFATE ION, Ubiquitin carboxyl-terminal hydrolase 28
Authors:Gersch, M, Komander, D.
Deposit date:2018-08-20
Release date:2019-03-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Distinct USP25 and USP28 Oligomerization States Regulate Deubiquitinating Activity.
Mol.Cell, 74, 2019
3NPC
DownloadVisualize
BU of 3npc by Molmil
Crystal structure of JNK2 complexed with BIRB796
Descriptor: 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA, Mitogen-activated protein kinase 9
Authors:Kuglstatter, A, Ghate, M.
Deposit date:2010-06-28
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:X-ray crystal structure of JNK2 complexed with the p38alpha inhibitor BIRB796: Insights into the rational design of DFG-out binding MAP kinase inhibitors.
Bioorg.Med.Chem.Lett., 20, 2010
6HJI
DownloadVisualize
BU of 6hji by Molmil
Xray structure of GLIC in complex with crotonate
Descriptor: BUTENOIC ACID, CHLORIDE ION, DIUNDECYL PHOSPHATIDYL CHOLINE, ...
Authors:Fourati, Z, Delarue, M.
Deposit date:2018-09-03
Release date:2019-09-18
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural evidence for the binding of monocarboxylates and dicarboxylates at pharmacologically relevant extracellular sites of a pentameric ligand-gated ion channel.
Acta Crystallogr D Struct Biol, 76, 2020
6HGP
DownloadVisualize
BU of 6hgp by Molmil
Crystal Structure of Human APRT wild type in complex with Phosphate ion.
Descriptor: Adenine phosphoribosyltransferase, PHOSPHATE ION
Authors:Nioche, P, Huyet, J, Ozeir, M.
Deposit date:2018-08-23
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for substrate selectivity and nucleophilic substitution mechanisms in human adenine phosphoribosyltransferase catalyzed reaction.
J.Biol.Chem., 294, 2019
8CLZ
DownloadVisualize
BU of 8clz by Molmil
Crystal structure of Rhizobium etli constitutive L-asparaginase ReAIV (monoclinic form R4mC-2)
Descriptor: CHLORIDE ION, Putative L-asparaginase II protein, ZINC ION
Authors:Loch, J.I, Worsztynowicz, P, Sliwiak, J, Imiolczyk, B, Grzechowiak, M, Gilski, M, Jaskolski, M.
Deposit date:2023-02-17
Release date:2023-08-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Rhizobium etli has two L-asparaginases with low sequence identity but similar structure and catalytic center.
Acta Crystallogr D Struct Biol, 79, 2023
6LPK
DownloadVisualize
BU of 6lpk by Molmil
A2AR crystallized in EROCOC17+4, LCP-SFX at 293 K
Descriptor: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, CHOLESTEROL, ...
Authors:Ihara, K, Hato, M, Nakane, T, Yamashita, K, Kimura-Someya, T, Hosaka, T, Ishizuka-Katsura, Y, Tanaka, R, Tanaka, T, Sugahara, M, Hirata, K, Yamamoto, M, Nureki, O, Tono, K, Nango, E, Iwata, S, Shirouzu, M.
Deposit date:2020-01-10
Release date:2020-11-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Isoprenoid-chained lipid EROCOC 17+4 : a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography.
Sci Rep, 10, 2020
6HGQ
DownloadVisualize
BU of 6hgq by Molmil
Crystal Structure of Human APRT wild type in complex with Hypoxanthine, PRPP and Mg2+
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Adenine phosphoribosyltransferase, GLYCEROL, ...
Authors:Nioche, P, Huyet, J, Ozeir, M.
Deposit date:2018-08-23
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for substrate selectivity and nucleophilic substitution mechanisms in human adenine phosphoribosyltransferase catalyzed reaction.
J.Biol.Chem., 294, 2019
8CLY
DownloadVisualize
BU of 8cly by Molmil
Crystal structure of Rhizobium etli constitutive L-asparaginase ReAIV (tetragonal form R4tP)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Putative L-asparaginase II protein, ...
Authors:Loch, J.I, Worsztynowicz, P, Sliwiak, J, Imiolczyk, B, Grzechowiak, M, Gilski, M, Jaskolski, M.
Deposit date:2023-02-17
Release date:2023-08-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Rhizobium etli has two L-asparaginases with low sequence identity but similar structure and catalytic center.
Acta Crystallogr D Struct Biol, 79, 2023
6HL2
DownloadVisualize
BU of 6hl2 by Molmil
wild-type NuoEF from Aquifex aeolicus - oxidized form
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Gerhardt, S, Friedrich, T, Einsle, O, Gnandt, E, Schulte, M, Fiegen, D.
Deposit date:2018-09-10
Release date:2019-06-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A mechanism to prevent production of reactive oxygen species by Escherichia coli respiratory complex I.
Nat Commun, 10, 2019
3OG3
DownloadVisualize
BU of 3og3 by Molmil
Crystal structure of an artificial thermostable (BA)8-barrel protein from identical half barrels
Descriptor: CHLORIDE ION, Imidazole glycerol phosphate synthase subunit hisF, SULFATE ION
Authors:Sperl, J.M, Bocola, M, List, F, Kellerer, B, Sterner, R.
Deposit date:2010-08-16
Release date:2011-08-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Design of an artificial thermostable (BA)8-barrel protein from identical half barrels
To be Published
6HLJ
DownloadVisualize
BU of 6hlj by Molmil
Variant G129S of NuoEF from Aquifex aeolicus - oxidized from
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Gerhardt, S, Friedrich, T, Einsle, O, Gnandt, E, Schulte, M, Fiegen, D.
Deposit date:2018-09-11
Release date:2019-06-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A mechanism to prevent production of reactive oxygen species by Escherichia coli respiratory complex I.
Nat Commun, 10, 2019
3OGL
DownloadVisualize
BU of 3ogl by Molmil
Structure of COI1-ASK1 in complex with JA-isoleucine and the JAZ1 degron
Descriptor: Coronatine-insensitive protein 1, JAZ1 incomplete degron peptide, N-({(1R,2S)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl}acetyl)-L-isoleucine, ...
Authors:Sheard, L.B, Tan, X, Mao, H, Withers, J, Ben-Nissan, G, Hinds, T.R, Hsu, F, Sharon, M, Browse, J, He, S.Y, Rizo, J, Howe, G.A, Zheng, N.
Deposit date:2010-08-17
Release date:2010-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Jasmonate perception by inositol-phosphate-potentiated COI1-JAZ co-receptor.
Nature, 468, 2010
3OFM
DownloadVisualize
BU of 3ofm by Molmil
Structure of a human CK2alpha prime, the paralog isoform of the catalytic subunit of protein kinase CK2 from Homo sapiens
Descriptor: 3-(4,5,6,7-tetrabromo-1H-benzotriazol-1-yl)propan-1-ol, CHLORIDE ION, Casein kinase II subunit alpha'
Authors:Bischoff, N, Olsen, B, Raaf, J, Bretner, M, Issinger, O.-G, Niefind, K.
Deposit date:2010-08-15
Release date:2011-01-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the reduced affinity between the protein kinase CK2 subunits CK2alpha prime and CK2beta
J.Mol.Biol., 407, 2011
3OG2
DownloadVisualize
BU of 3og2 by Molmil
Native crystal structure of Trichoderma reesei beta-galactosidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-galactosidase, ...
Authors:Maksimainen, M, Rouvinen, J.
Deposit date:2010-08-16
Release date:2011-03-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structures of Trichoderma reesei beta-galactosidase reveal conformational changes in the active site
J.Struct.Biol., 174, 2011
5TP3
DownloadVisualize
BU of 5tp3 by Molmil
Crystal structure of the RSV-neutralizing single-domain antibody F-VHH-4
Descriptor: F-VHH-4
Authors:Wrapp, D, Gilman, M.S.A, McLellan, J.S.
Deposit date:2016-10-19
Release date:2017-02-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.874 Å)
Cite:Potent single-domain antibodies that arrest respiratory syncytial virus fusion protein in its prefusion state.
Nat Commun, 8, 2017
3OC3
DownloadVisualize
BU of 3oc3 by Molmil
Crystal structure of the Mot1 N-terminal domain in complex with TBP
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HELICASE MOT1, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1)
Authors:Wollmann, P, Cui, S, Viswanathan, R, Berninghausen, O, Wells, M.N, Moldt, M, Witte, G, Butryn, A, Wendler, P, Beckmann, R, Auble, D.T, Hopfner, K.-P.
Deposit date:2010-08-09
Release date:2011-07-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
Nature, 475, 2011
3OGV
DownloadVisualize
BU of 3ogv by Molmil
Complex structure of beta-galactosidase from Trichoderma reesei with PETG
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-phenylethyl 1-thio-beta-D-galactopyranoside, ...
Authors:Maksimainen, M, Rouvinen, J.
Deposit date:2010-08-17
Release date:2011-03-16
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structures of Trichoderma reesei beta-galactosidase reveal conformational changes in the active site
J.Struct.Biol., 174, 2011
3O8H
DownloadVisualize
BU of 3o8h by Molmil
EthR from Mycobacterium tuberculosis in complex with compound BDM14950
Descriptor: 4-iodo-N-[(1-{2-oxo-2-[4-(3-thiophen-2-yl-1,2,4-oxadiazol-5-yl)piperidin-1-yl]ethyl}-1H-1,2,3-triazol-4-yl)methyl]benzenesulfonamide, Transcriptional Regulatory Repressor protein (TETR-Family) EthR
Authors:Willand, N, Desroses, M, Toto, P, Diri, B, Lens, Z, Villeret, V, Rucktooa, P, Locht, C, Baulard, A, Deprez, B.
Deposit date:2010-08-03
Release date:2010-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Exploring drug target flexibility using in situ click chemistry: application to a mycobacterial transcriptional regulator.
Acs Chem.Biol., 5, 2010
6HUE
DownloadVisualize
BU of 6hue by Molmil
ParkinS65N
Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin, GLYCEROL, ...
Authors:McWilliams, T.G, Barini, E, Pohjolan-Pirhonen, R, Brooks, S.P, Singh, F, Burel, S, Balk, K, Kumar, A, Montava-Garriga, L, Prescott, A.R, Hassoun, S.M, Mouton-Liger, F, Ball, G, Hills, R, Knebel, A, Ulusoy, A, Di Monte, D.A, Tamjar, J, Antico, O, Fears, K, Smith, L, Brambilla, R, Palin, E, Valori, M, Eerola-Rautio, J, Tienari, P, Corti, O, Dunnett, S.B, Ganley, I.G, Suomalainen, A, Muqit, M.M.K.
Deposit date:2018-10-07
Release date:2018-10-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Phosphorylation of Parkin at serine 65 is essential for its activation in vivo .
Open Biology, 8, 2018
6HOH
DownloadVisualize
BU of 6hoh by Molmil
Structure of VPS34 LIR motif (S249E) bound to GABARAP
Descriptor: Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein, TRIETHYLENE GLYCOL
Authors:Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T.
Deposit date:2018-09-17
Release date:2019-02-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs.
Autophagy, 15, 2019
5OVL
DownloadVisualize
BU of 5ovl by Molmil
crystal structure of MabA bound to NADP+ from M. smegmatis
Descriptor: 3-oxoacyl-[acyl-carrier-protein] reductase FabG, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Kussau, T, Van Wyk, N, Viljoen, A, Olieric, V, Flipo, M, Kremer, L, Blaise, M.
Deposit date:2017-08-29
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural rearrangements occurring upon cofactor binding in the Mycobacterium smegmatis beta-ketoacyl-acyl carrier protein reductase MabA.
Acta Crystallogr D Struct Biol, 74, 2018
3OD9
DownloadVisualize
BU of 3od9 by Molmil
Crystal structure of PliI-Ah, periplasmic lysozyme inhibitor of I-type lysozyme from Aeromonas hydrophyla
Descriptor: POTASSIUM ION, Putative exported protein, SODIUM ION
Authors:Leysen, S, Van Herreweghe, J.M, Callewaert, L, Heirbaut, M, Buntinx, P, Michiels, C.W, Strelkov, S.V.
Deposit date:2010-08-11
Release date:2010-12-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.411 Å)
Cite:Molecular Basis of Bacterial Defense against Host Lysozymes: X-ray Structures of Periplasmic Lysozyme Inhibitors PliI and PliC.
J.Mol.Biol., 405, 2011

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon