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PDB: 52230 results

7ELH
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In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state
Descriptor: Lambda 1, Minor core protein mu2, PHOSPHATE ION, ...
Authors:Zhou, Z.H, Pan, M.
Deposit date:2021-04-11
Release date:2021-10-20
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Asymmetric reconstruction of mammalian reovirus reveals interactions among RNA, transcriptional factor mu2 and capsid proteins.
Nat Commun, 12, 2021
1UWD
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BU of 1uwd by Molmil
NMR STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM THERMOTOGA MARITIMA (TM0487), WHICH BELONGS TO THE DUF59 FAMILY.
Descriptor: HYPOTHETICAL PROTEIN TM0487
Authors:Almeida, M.S, Peti, W, Herrmann, T, Wuthrich, K.
Deposit date:2004-02-03
Release date:2004-12-14
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Structure of the Conserved Hypothetical Protein Tm0487 from Thermotoga Maritima: Implications for 216 Homologous Duf59 Proteins.
Protein Sci., 14, 2005
3EEF
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BU of 3eef by Molmil
Crystal structure of N-carbamoylsarcosine amidase from thermoplasma acidophilum
Descriptor: N-carbamoylsarcosine amidase related protein, ZINC ION
Authors:Luo, H.-B, Zheng, H, Chruszcz, M, Zimmerman, M.D, Skarina, T, Egorova, O, Savchenko, A, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-09-04
Release date:2008-09-16
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure and molecular modeling study of N-carbamoylsarcosine amidase Ta0454 from Thermoplasma acidophilum.
J.Struct.Biol., 169, 2010
3EEY
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CRYSTAL STRUCTURE OF PUTATIVE RRNA-METHYLASE FROM Clostridium thermocellum
Descriptor: GLYCEROL, Putative rRNA methylase, S-ADENOSYLMETHIONINE, ...
Authors:Patskovsky, Y, Ramagopal, U.A, Toro, R, Rutter, M, Hu, S, Bain, K, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-09-06
Release date:2008-09-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Rrna-Methylase from Clostridium Thermocellum
To be Published
6K67
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BU of 6k67 by Molmil
Application of anti-helix antibodies in protein structure determination (9011-3LRH)
Descriptor: 3LRH introbody, CALCIUM ION, Engineered calmodulin
Authors:Lee, J.O, Jin, M.S, Kim, J.W, Kim, S, Lee, H, Cho, G.Y.
Deposit date:2019-06-01
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Application of antihelix antibodies in protein structure determination.
Proc.Natl.Acad.Sci.USA, 116, 2019
3EH7
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The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
Descriptor: 4-hydroxybutyrate CoA-transferase, CHLORIDE ION
Authors:Cuff, M.E, Duggan, E, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-09-11
Release date:2008-12-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
TO BE PUBLISHED
3AX6
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BU of 3ax6 by Molmil
Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermotoga maritima
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Phosphoribosylaminoimidazole carboxylase, ATPase subunit
Authors:Miyazawa, R, Kanagawa, M, Baba, S, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-03-30
Release date:2012-04-25
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria
To be Published
7EIM
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BU of 7eim by Molmil
Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (W470A) in complex with maltopentaose
Descriptor: 4-alpha-glucanotransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Shen, M, Xiang, S.
Deposit date:2021-03-31
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of glycogen-debranching enzyme mutants in complex with oligosaccharides.
Acta Crystallogr.,Sect.F, 77, 2021
7EJT
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Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (W470A) in complex with maltoheptaose
Descriptor: 4-alpha-glucanotransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Shen, M, Xiang, S.
Deposit date:2021-04-02
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of glycogen-debranching enzyme mutants in complex with oligosaccharides.
Acta Crystallogr.,Sect.F, 77, 2021
7EJP
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Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (W470A) in complex with maltohexaose
Descriptor: 4-alpha-glucanotransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Shen, M, Xiang, S.
Deposit date:2021-04-02
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of glycogen-debranching enzyme mutants in complex with oligosaccharides.
Acta Crystallogr.,Sect.F, 77, 2021
7EKX
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Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (W470A E564Q) in complex with maltononaose
Descriptor: 4-alpha-glucanotransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Shen, M, Xiang, S.
Deposit date:2021-04-07
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structures of glycogen-debranching enzyme mutants in complex with oligosaccharides.
Acta Crystallogr.,Sect.F, 77, 2021
7EKW
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BU of 7ekw by Molmil
Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (D535N) in complex with maltotetrose
Descriptor: 4-alpha-glucanotransferase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Shen, M, Xiang, S.
Deposit date:2021-04-07
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of glycogen-debranching enzyme mutants in complex with oligosaccharides.
Acta Crystallogr.,Sect.F, 77, 2021
3B38
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BU of 3b38 by Molmil
Structure of A104V DJ-1
Descriptor: 1,2-ETHANEDIOL, Protein DJ-1
Authors:Lakshminarasimhan, M, Maldonado, M.T, Zhou, W, Fink, A.L, Wilson, M.A.
Deposit date:2007-10-19
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1.
Biochemistry, 47, 2008
3AY8
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BU of 3ay8 by Molmil
Glutathione S-transferase unclassified 2 from Bombyx mori
Descriptor: GLYCEROL, Glutathione S-transferase
Authors:Kakuta, Y, Usuda, K, Nakashima, T, Kimura, M, Aso, Y, Yamamoto, K.
Deposit date:2011-05-02
Release date:2011-09-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori
Biochim.Biophys.Acta, 1810, 2011
3B4W
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BU of 3b4w by Molmil
Crystal structure of Mycobacterium tuberculosis aldehyde dehydrogenase complexed with NAD+
Descriptor: Aldehyde dehydrogenase, ETHANOL, GLYCEROL, ...
Authors:Moon, J.H, Lyon, A.E, Yu, M, Hung, L.-W, Terwilliger, T, Kim, C.-Y, Integrated Center for Structure and Function Innovation (ISFI), TB Structural Genomics Consortium (TBSGC)
Deposit date:2007-10-24
Release date:2007-11-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of aldehyde dehydrogenase from Mycobacterium tuberculosis complexed with NAD+.
To Be Published
7XVX
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BU of 7xvx by Molmil
Neutron crystal structure of human macrophage migration inhibitory factor
Descriptor: Macrophage migration inhibitory factor
Authors:Ezawa, T, Tamada, T, Odaka, M, Matsumura, H.
Deposit date:2022-05-25
Release date:2023-05-31
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.6 Å), X-RAY DIFFRACTION
Cite:Neutron crystal structure of human macrophage migration inhibitory factor
To Be Published
4IX9
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BU of 4ix9 by Molmil
Crystal structure of subunit F of V-ATPase from S. cerevisiae
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, V-type proton ATPase subunit F
Authors:Basak, S, Balakrishna, A.M, Manimekalai, M.S.S, Gruber, G.
Deposit date:2013-01-24
Release date:2013-03-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Crystal and NMR structures give insights into the role and dynamics of subunit F of the eukaryotic V-ATPase from Saccharomyces cerevisiae
J.Biol.Chem., 288, 2013
3AY9
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BU of 3ay9 by Molmil
Crystal structure of human Hsp70 NBD in the ADP-, Mg ion-, and K ion-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, CHLORIDE ION, ...
Authors:Arakawa, A, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2011-05-03
Release date:2011-12-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Biochemical and structural studies on the high affinity of Hsp70 for ADP.
Protein Sci., 20, 2011
3B6V
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BU of 3b6v by Molmil
Crystal structure of the motor domain of human kinesin family member 3C in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Kinesin-like protein KIF3C, MAGNESIUM ION, ...
Authors:Zhu, H, Tempel, W, Shen, Y, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2007-10-29
Release date:2007-11-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Motor domain of human kinesin family member 3C in complex with ADP.
To be Published
3B0V
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BU of 3b0v by Molmil
tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
Descriptor: FLAVIN MONONUCLEOTIDE, tRNA, tRNA-dihydrouridine synthase
Authors:Yu, F, Tanaka, Y, Yamashita, K, Nakamura, A, Yao, M, Tanaka, I.
Deposit date:2011-06-14
Release date:2011-12-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Molecular basis of dihydrouridine formation on tRNA
Proc.Natl.Acad.Sci.USA, 108, 2011
7EHZ
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BU of 7ehz by Molmil
Structure of human NNMT in complex with macrocyclic peptide 2
Descriptor: Nicotinamide N-methyltransferase, macrocyclic peptide 2
Authors:Hayashi, K, Mikamiyama, H, Uehara, S, Yamamoto, S, Cary, D, Nishikawa, J, Ueda, T, Ozasa, H, Mihara, K, Yoshimura, N, Kawai, T, Ono, T, Yamamoto, S, Fumoto, M.
Deposit date:2021-03-30
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Macrocyclic Peptides as a Novel Class of NNMT Inhibitors: A SAR Study Aimed at Inhibitory Activity in the Cell.
Acs Med.Chem.Lett., 12, 2021
3B36
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BU of 3b36 by Molmil
Structure of M26L DJ-1
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Protein DJ-1
Authors:Lakshminarasimhan, M, Maldonado, M.T, Zhou, W, Fink, A.L, Wilson, M.A.
Deposit date:2007-10-19
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Impact of Three Parkinsonism-Associated Missense Mutations on Human DJ-1.
Biochemistry, 47, 2008
3B8G
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BU of 3b8g by Molmil
Crysta structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and N-acetyl-glutamate
Descriptor: COENZYME A, N-ACETYL-L-GLUTAMATE, Putative acetylglutamate synthase
Authors:Shi, D, Sagar, V, Jin, Z, Yu, X, Caldovic, L, Morizono, H, Allewell, N.M, Tuchman, M.
Deposit date:2007-11-01
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The crystal structure of N-acetyl-L-glutamate synthase from Neisseria gonorrhoeae provides insights into mechanisms of catalysis and regulation.
J.Biol.Chem., 283, 2008
3B4D
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BU of 3b4d by Molmil
Crystal Structure of Human PABPN1 RRM
Descriptor: Polyadenylate-binding protein 2
Authors:Ge, H, Tong, S, Teng, M, Niu, L.
Deposit date:2007-10-24
Release date:2008-01-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal structure and possible dimerization of the single RRM of human PABPN1
Proteins, 71, 2008
7E17
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BU of 7e17 by Molmil
Structure of dimeric uPAR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Urokinase plasminogen activator surface receptor
Authors:Cai, Y, Huang, M.
Deposit date:2021-02-01
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:Crystal structure and cellular functions of uPAR dimer
Nat Commun, 13, 2022

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PDB entries from 2024-11-06

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