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PDB: 51964 results

2Z6S
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Crystal structure of the oxy myoglobin free from X-ray-induced photoreduction
Descriptor: Myoglobin, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Unno, M, Kusama, S, Chen, H, Shaik, S, Ikeda-Saito, M.
Deposit date:2007-08-08
Release date:2007-11-06
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural Characterization of the Fleeting Ferric Peroxo Species in Myoglobin: Experiment and Theory
J.Am.Chem.Soc., 129, 2007
2LRI
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BU of 2lri by Molmil
NMR structure of the second PHD finger of AIRE (AIRE-PHD2)
Descriptor: Autoimmune regulator, ZINC ION
Authors:Gaetani, M, Chignola, F, Mollica, L, Quilici, G, Mannella, V, Spiliotopoulos, D, Musco, G.
Deposit date:2012-04-03
Release date:2012-10-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:AIRE-PHD fingers are structural hubs to maintain the integrity of chromatin-associated interactome.
Nucleic Acids Res., 40, 2012
1IQT
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BU of 1iqt by Molmil
Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)
Descriptor: heterogeneous nuclear ribonucleoprotein D0
Authors:Katahira, M, Miyanoiri, Y, Enokizono, Y, Matsuda, G, Nagata, T, Ishikawa, F, Uesugi, S.
Deposit date:2001-08-01
Release date:2002-08-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA.
J.Mol.Biol., 311, 2001
2Z80
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BU of 2z80 by Molmil
Crystal structure of the TLR1-TLR2 heterodimer induced by binding of a tri-acylated lipopeptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Toll-like receptor 2, Variable lymphocyte receptor B
Authors:Lee, J.O, Jin, M.S, Kim, S.E, Heo, J.Y.
Deposit date:2007-08-30
Release date:2007-09-25
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of the TLR1-TLR2 Heterodimer Induced by Binding of a Tri-Acylated Lipopeptide
Cell(Cambridge,Mass.), 130, 2007
7RAR
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BU of 7rar by Molmil
Structure of Q67H mutant of disulfide stabilized HIV-1 CA hexamer
Descriptor: CHLORIDE ION, Capsid protein p24, IODIDE ION
Authors:Bester, S.M, Kvaratskhelia, M.
Deposit date:2021-07-02
Release date:2022-09-28
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural and Mechanistic Bases of Viral Resistance to HIV-1 Capsid Inhibitor Lenacapavir.
Mbio, 13, 2022
5FTD
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BU of 5ftd by Molmil
Crystal structure of Pif1 helicase from Bacteroides apo form
Descriptor: PHOSPHATE ION, TPR DOMAIN PROTEIN
Authors:Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G.
Deposit date:2016-01-12
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.695 Å)
Cite:Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding
Nucleic Acids Res., 44, 2016
5JBN
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BU of 5jbn by Molmil
Crystal Structure of Apo Phosphopantetheine Adenylyltransferase (PPAT/CoaD) from E. coli
Descriptor: DIMETHYL SULFOXIDE, Phosphopantetheine adenylyltransferase, SULFATE ION
Authors:Mamo, M, Proudfoot, A, Bussiere, D.
Deposit date:2016-04-13
Release date:2016-05-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Facilitating unambiguous NMR assignments and enabling higher probe density through selective labeling of all methyl containing amino acids.
J.Biomol.Nmr, 65, 2016
6Y0H
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BU of 6y0h by Molmil
High resolution structure of GH11 xylanase from Nectria haematococca
Descriptor: Endo-1,4-beta-xylanase
Authors:Andaleeb, H, Betzel, C, Perbandt, M, Brognaro, H.
Deposit date:2020-02-07
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-resolution crystal structure and biochemical characterization of a GH11 endoxylanase from Nectria haematococca.
Sci Rep, 10, 2020
6Y8O
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Mycobacterium smegmatis GyrB 22kDa ATPase sub-domain in complex with novobiocin
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA gyrase subunit B, ...
Authors:Henderson, S.R, Stevenson, C.E.M, Malone, B, Zholnerovych, Y, Mitchenall, L.A, Pichowicz, M, McGarry, D.H, Cooper, I.R, Charrier, C, Salisbury, A, Lawson, D.M, Maxwell, A.
Deposit date:2020-03-05
Release date:2020-08-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and mechanistic analysis of ATPase inhibitors targeting mycobacterial DNA gyrase.
J.Antimicrob.Chemother., 75, 2020
5FTL
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BU of 5ftl by Molmil
Cryo-EM structure of human p97 bound to ATPgS (Conformation I)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE
Authors:Banerjee, S, Bartesaghi, A, Merk, A, Rao, P, Bulfer, S.L, Yan, Y, Green, N, Mroczkowski, B, Neitz, R.J, Wipf, P, Falconieri, V, Deshaies, R.J, Milne, J.L.S, Huryn, D, Arkin, M, Subramaniam, S.
Deposit date:2016-01-14
Release date:2016-01-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:2.3 A Resolution Cryo-Em Structure of Human P97 and Mechanism of Allosteric Inhibition
Science, 351, 2016
2Z9T
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Crystal structure of the human beta-2 microglobulin mutant W60G
Descriptor: Beta-2-microglobulin
Authors:Ricagno, S, Bolognesi, M, Bellotti, V, Corazza, A, Rennella, E, Gural, D, Mimmi, M.C, Betto, E, Pucillo, C, Fogolari, F, Viglino, P, Raimondi, S, Giorgetti, S, Bolognesi, B, Merlini, G, Stoppini, M.
Deposit date:2007-09-26
Release date:2008-04-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The controlling roles of Trp60 and Trp95 in beta2-microglobulin function, folding and amyloid aggregation properties
J.Mol.Biol., 378, 2008
5FLL
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BU of 5fll by Molmil
Crystal structure of the 6-carboxyhexanoate-CoA ligase (BioW) from Bacillus subtilis in complex with a Pimeloyl-adenylate
Descriptor: 6-CARBOXYHEXANOATE-COA LIGASE, MAGNESIUM ION, PIMELOYL-AMP, ...
Authors:Moynie, L, Wang, M, Campopiano, D.J, Naismith, J.H.
Deposit date:2015-10-26
Release date:2016-11-16
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Using the pimeloyl-CoA synthetase adenylation fold to synthesize fatty acid thioesters.
Nat. Chem. Biol., 13, 2017
8OFF
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BU of 8off by Molmil
Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1)
Descriptor: BRCA1 associated RING domain 1, DNA (142-MER), Histone H2A type 1, ...
Authors:Foglizzo, M, Burdett, H, Wilson, M.D, Zeqiraj, E.
Deposit date:2023-03-15
Release date:2023-10-11
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:BRCA1-BARD1 combines multiple chromatin recognition modules to bridge nascent nucleosomes.
Nucleic Acids Res., 51, 2023
6Y94
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BU of 6y94 by Molmil
Ca2+-bound Calmodulin mutant N53I
Descriptor: CALCIUM ION, Calmodulin
Authors:Holt, C, Nielsen, L.H, Lau, K, Brohus, M, Sorensen, A.B, Larsen, K.T, Sommer, C, Petegem, F.V, Overgaard, M.T, Wimmer, R.
Deposit date:2020-03-06
Release date:2020-04-29
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:The arrhythmogenic N53I variant subtly changes the structure and dynamics in the calmodulin N-terminal domain, altering its interaction with the cardiac ryanodine receptor.
J.Biol.Chem., 295, 2020
6Y3Z
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BU of 6y3z by Molmil
Crystal structure of the Pby1 ATP-grasp enzyme bound to the S. cerevisiae mRNA decapping complex (Dcp1-Dcp2-Edc3)
Descriptor: Enhancer of mRNA-decapping protein 3, MAGNESIUM ION, Probable tubulin--tyrosine ligase PBY1, ...
Authors:Graille, M.
Deposit date:2020-02-19
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.49 Å)
Cite:Pby1 is a direct partner of the Dcp2 decapping enzyme.
Nucleic Acids Res., 48, 2020
7R5T
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BU of 7r5t by Molmil
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NADH, AND GLYCEROL
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ADENOSINE-5-DIPHOSPHORIBOSE, FE (III) ION, ...
Authors:Sridhar, S, Kiema, T.R, Wierenga, R, Widersten, M.
Deposit date:2022-02-11
Release date:2022-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics.
Febs J., 290, 2023
5JM1
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BU of 5jm1 by Molmil
Structure of tetrameric jacalin complexed with a trisaccharide, Gal alpha-(1,3) Gal beta-(1,4) Gal
Descriptor: 1,2-ETHANEDIOL, Agglutinin alpha chain, Agglutinin beta-3 chain, ...
Authors:Abhinav, K.V, Sharma, K, Surolia, A, Vijayan, M.
Deposit date:2016-04-28
Release date:2016-12-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Effect of linkage on the location of reducing and nonreducing sugars bound to jacalin.
IUBMB Life, 68, 2016
6Y1L
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BU of 6y1l by Molmil
Crystal structure of the paraoxon-modified A.17 antibody FAB fragment - L47R mutant
Descriptor: DIETHYL PHOSPHONATE, FAB A.17 L47R mutant HEAVY CHAIN, FAB A.17 L47R mutant Light CHAIN, ...
Authors:Chatziefthimiou, S, Mokrushina, Y, Smirnov, I, Gabibov, A, Wilmanns, M.
Deposit date:2020-02-12
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers.
Proc.Natl.Acad.Sci.USA, 117, 2020
2ZCC
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BU of 2zcc by Molmil
Ubiquitin crystallized under high pressure
Descriptor: Ubiquitin, ZINC ION
Authors:Kitahara, R, Tanaka, T, Yamashita, M, Araya, K, Yokoyama, S, Akasaka, K, Taniguchi, Y, Kato, M.
Deposit date:2007-11-08
Release date:2007-11-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of Ubiquitin crystallized under high pressure
to be published
7R3D
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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND GLYCEROL (Absence of Nicotinamide ring)
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, FE (III) ION, Lactaldehyde reductase
Authors:Sridhar, S, Kiema, T.R, Wierenga, R, Widersten, M.
Deposit date:2022-02-07
Release date:2022-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of lactaldehyde reductase, FucO, link enzyme activity to hydrogen bond networks and conformational dynamics.
Febs J., 290, 2023
5JMG
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X-ray structure of the complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days of soaking)
Descriptor: CARBON MONOXIDE, CHLORIDE ION, IRIDIUM ION, ...
Authors:Caterino, M, Petruk, A.A, Vergara, A, Ferraro, G, Merlino, A.
Deposit date:2016-04-29
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Mapping the protein-binding sites for iridium(iii)-based CO-releasing molecules.
Dalton Trans, 45, 2016
7R6R
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BU of 7r6r by Molmil
Crystal Structure of a Mycobacteriophage Cluster A2 Immunity Repressor:DNA Complex
Descriptor: DNA (5'-D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)-3'), Immunity repressor
Authors:McGinnis, R.J, Brambley, C.A, Stamey, B, Green, W.C, Gragg, K.N, Cafferty, E.R, Terwilliger, T.C, Hammel, M, Hollis, T.J, Miller, J.M, Gainey, M.D, Wallen, J.R.
Deposit date:2021-06-23
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.13 Å)
Cite:A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence.
Nat Commun, 13, 2022
6Y4P
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BU of 6y4p by Molmil
Calmodulin N53I variant bound to cardiac ryanodine receptor (RyR2) calmodulin binding domain
Descriptor: CALCIUM ION, Calmodulin-1, Ryanodine receptor 2
Authors:Lau, K, Nielsen, L.H, Holt, C, Brohus, M, Sorensen, A.B, Larsen, K.T, Sommer, C, Van Petegem, F, Overgaard, M.T, Wimmer, R.
Deposit date:2020-02-21
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.13325572 Å)
Cite:The arrhythmogenic N53I variant subtly changes the structure and dynamics in the calmodulin N-terminal domain, altering its interaction with the cardiac ryanodine receptor.
J.Biol.Chem., 295, 2020
5JMS
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BU of 5jms by Molmil
Crystal structure of TgCDPK1 bound to CGP060476
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Calmodulin-domain protein kinase 1, ...
Authors:El Bakkouri, M, Walker, J.R, Loppnau, P, Graslund, S, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Hui, R, Lovato, D.V, Structural Genomics Consortium (SGC)
Deposit date:2016-04-29
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of TgCDPK1bount to CGP060476
To Be Published
4OY8
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BU of 4oy8 by Molmil
Structure of ScLPMO10B in complex with zinc.
Descriptor: ACETATE ION, Putative secreted cellulose-binding protein, ZINC ION
Authors:Forsberg, Z, Mackenzie, A.K, Sorlie, M, Rohr, A.K, Helland, R, Arvai, A.S, Vaaje-Kolstad, G, Eijsink, V.G.H.
Deposit date:2014-02-11
Release date:2014-05-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases.
Proc.Natl.Acad.Sci.USA, 111, 2014

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