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PDB: 95 results

5JP6
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BU of 5jp6 by Molmil
Bdellovibrio bacteriovorus peptidoglycan deacetylase Bd3279
Descriptor: MAGNESIUM ION, Putative polysaccharide deacetylase, ZINC ION
Authors:Lovering, A.L.
Deposit date:2016-05-03
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts.
Sci Rep, 6, 2016
3V39
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Bd3459, A Predatory Peptidoglycan Endopeptidase from Bdellovibrio bacteriovorus
Descriptor: 2-AMINOETHANESULFONIC ACID, D-alanyl-D-alanine carboxypeptidase, SULFATE ION, ...
Authors:Lovering, A.L, Lerner, T.R, Sockett, R.E.
Deposit date:2011-12-13
Release date:2012-02-22
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Specialized peptidoglycan hydrolases sculpt the intra-bacterial niche of predatory Bdellovibrio and increase population fitness.
Plos Pathog., 8, 2012
4DKI
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BU of 4dki by Molmil
Structural Insights into the Anti- Methicillin-Resistant Staphylococcus aureus (MRSA) Activity of Ceftobiprole
Descriptor: (2R)-2-[(1R)-1-{[(2Z)-2-(5-amino-1,2,4-thiadiazol-3-yl)-2-(hydroxyimino)acetyl]amino}-2-oxoethyl]-5-({2-oxo-1-[(3R)-pyrrolidin-3-yl]-2,5-dihydro-1H-pyrrol-3-yl}methyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid, BICARBONATE ION, CADMIUM ION, ...
Authors:Lovering, A.L, Gretes, M.C, Strynadka, N.C.J.
Deposit date:2012-02-03
Release date:2012-08-01
Last modified:2012-10-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Insights into the Anti-methicillin-resistant Staphylococcus aureus (MRSA) Activity of Ceftobiprole.
J.Biol.Chem., 287, 2012
3DWK
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Identification of Dynamic Structural Motifs Involved in Peptidoglycan Glycosyltransfer
Descriptor: LAURYL DIMETHYLAMINE-N-OXIDE, Penicillin-binding protein 2, SULFATE ION
Authors:Lovering, A.L, De Castro, L, Strynadka, N.C.J.
Deposit date:2008-07-22
Release date:2008-09-30
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Identification of dynamic structural motifs involved in peptidoglycan glycosyltransfer.
J.Mol.Biol., 383, 2008
3L7M
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BU of 3l7m by Molmil
Structure of the Wall Teichoic Acid Polymerase TagF, H548A
Descriptor: CHLORIDE ION, PHOSPHATE ION, Teichoic acid biosynthesis protein F, ...
Authors:Lovering, A.L, Strynadka, N.C.J.
Deposit date:2009-12-28
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis.
Nat.Struct.Mol.Biol., 17, 2010
3L7L
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BU of 3l7l by Molmil
Structure of the Wall Teichoic Acid Polymerase TagF, H444N + CDPG (30 minute soak)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
Authors:Lovering, A.L, Strynadka, N.C.J.
Deposit date:2009-12-28
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis.
Nat.Struct.Mol.Biol., 17, 2010
2FFF
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BU of 2fff by Molmil
Open Form of a Class A Transpeptidase Domain
Descriptor: NICKEL (II) ION, penicillin-binding protein 1B
Authors:Lovering, A.L, Strynadka, N.C.J.
Deposit date:2005-12-19
Release date:2006-06-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural analysis of an "open" form of PBP1B from Streptococcus pneumoniae.
Protein Sci., 15, 2006
2QF4
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High resolution structure of the major periplasmic domain from the cell shape-determining filament MreC (orthorhombic form)
Descriptor: 1,2-ETHANEDIOL, Cell shape determining protein MreC, SULFATE ION
Authors:Lovering, A.L, Strynadka, N.C.J.
Deposit date:2007-06-26
Release date:2007-08-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution Structure of the Major Periplasmic Domain from the Cell Shape-determining Filament MreC.
J.Mol.Biol., 372, 2007
7O21
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Structure of Bdellovibrio bacteriovorus Bd1075
Descriptor: 1,2-ETHANEDIOL, BROMIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Lovering, A.L, Valdivia-Delgado, M.
Deposit date:2021-03-30
Release date:2021-04-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Asymmetric peptidoglycan editing generates cell curvature in Bdellovibrio predatory bacteria.
Nat Commun, 13, 2022
7OC9
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BU of 7oc9 by Molmil
Structure of Bdellovibrio bacteriovorus Bd0675
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Bd0675, GLYCEROL, ...
Authors:Lovering, A.L, Valdivia-Delgado, M.
Deposit date:2021-04-26
Release date:2021-05-05
Last modified:2021-12-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Target highlights in CASP14: Analysis of models by structure providers.
Proteins, 89, 2021
2OLU
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BU of 2olu by Molmil
Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Apoenzyme
Descriptor: 1,2-ETHANEDIOL, Penicillin-binding protein 2
Authors:Lovering, A.L, De Castro, L.H, Lim, D, Strynadka, N.C.
Deposit date:2007-01-19
Release date:2007-03-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insight into the transglycosylation step of bacterial cell-wall biosynthesis.
Science, 315, 2007
2OLV
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BU of 2olv by Molmil
Structural Insight Into the Transglycosylation Step Of Bacterial Cell Wall Biosynthesis : Donor Ligand Complex
Descriptor: MOENOMYCIN, Penicillin-binding protein 2
Authors:Lovering, A.L, De Castro, L, Lim, D, Strynadka, N.C.J.
Deposit date:2007-01-19
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insight into the transglycosylation step of bacterial cell-wall biosynthesis.
Science, 315, 2007
2QF5
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BU of 2qf5 by Molmil
High resolution structure of the major periplasmic domain from the cell shape-determining filament MreC (monoclinic form)
Descriptor: Cell shape determining protein MreC
Authors:Lovering, A.L, Strynadka, N.C.J.
Deposit date:2007-06-26
Release date:2007-08-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:High-resolution Structure of the Major Periplasmic Domain from the Cell Shape-determining Filament MreC.
J.Mol.Biol., 372, 2007
6HBZ
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BU of 6hbz by Molmil
Bdellovibrio bacteriovorus DgcB Full-length
Descriptor: 1,2-ETHANEDIOL, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CHLORIDE ION, ...
Authors:Lovering, A.L, Meek, R.W.
Deposit date:2018-08-13
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural basis for activation of a diguanylate cyclase required for bacterial predation in Bdellovibrio.
Nat Commun, 10, 2019
1ICV
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BU of 1icv by Molmil
THE STRUCTURE OF ESCHERICHIA COLI NITROREDUCTASE COMPLEXED WITH NICOTINIC ACID
Descriptor: FLAVIN MONONUCLEOTIDE, NICOTINIC ACID, OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
Authors:Lovering, A.L, Hyde, E.I, Searle, P.F, White, S.A.
Deposit date:2001-04-02
Release date:2001-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of Escherichia coli nitroreductase complexed with nicotinic acid: three crystal forms at 1.7 A, 1.8 A and 2.4 A resolution.
J.Mol.Biol., 309, 2001
1ICU
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BU of 1icu by Molmil
THE STRUCTURE OF ESCHERICHIA COLI NITROREDUCTASE COMPLEXED WITH NICOTINIC ACID
Descriptor: FLAVIN MONONUCLEOTIDE, NICOTINIC ACID, OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
Authors:Lovering, A.L, Hyde, E.I, Searle, P.F, White, S.A.
Deposit date:2001-04-02
Release date:2001-04-18
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of Escherichia coli nitroreductase complexed with nicotinic acid: three crystal forms at 1.7 A, 1.8 A and 2.4 A resolution.
J.Mol.Biol., 309, 2001
1ICR
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BU of 1icr by Molmil
THE STRUCTURE OF ESCHERICHIA COLI NITROREDUCTASE COMPLEXED WITH NICOTINIC ACID
Descriptor: FLAVIN MONONUCLEOTIDE, NICOTINIC ACID, OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
Authors:Lovering, A.L, Hyde, E.I, Searle, P.F, White, S.A.
Deposit date:2001-04-02
Release date:2001-04-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of Escherichia coli nitroreductase complexed with nicotinic acid: three crystal forms at 1.7 A, 1.8 A and 2.4 A resolution.
J.Mol.Biol., 309, 2001
6HQ7
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BU of 6hq7 by Molmil
Structure of EAL Enzyme Bd1971 - cGMP bound form
Descriptor: CYCLIC GUANOSINE MONOPHOSPHATE, EAL Enzyme Bd1971, MAGNESIUM ION
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2018-09-24
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
6HC0
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BU of 6hc0 by Molmil
Bdellovibrio bacteriovorus DgcB FHA domain, tail complex
Descriptor: DgcB N-terminus, FORMIC ACID, GGDEF domain protein
Authors:Lovering, A.L, Meek, R.W.
Deposit date:2018-08-13
Release date:2019-08-28
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for activation of a diguanylate cyclase required for bacterial predation in Bdellovibrio.
Nat Commun, 10, 2019
6HQ3
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BU of 6hq3 by Molmil
Structure of EAL Enzyme Bd1971 - halfsite-occupied form
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, EAL Enzyme Bd1971
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2018-09-24
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
6HQ4
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BU of 6hq4 by Molmil
Structure of EAL enzyme Bd1971 - cAMP bound form
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, EAL Enzyme Bd1971, MAGNESIUM ION
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2018-09-24
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
6HQ2
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BU of 6hq2 by Molmil
Structure of EAL Enzyme Bd1971 - apo form
Descriptor: EAL Enzyme Bd1971
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2018-09-24
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
6HC1
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BU of 6hc1 by Molmil
Bdellovibrio bacteriovorus DgcB FHA in complex with phosphorylated N-terminal peptide
Descriptor: DgcB N-terminus, phosphorylated, GGDEF domain protein
Authors:Lovering, A.L, Meek, R.W.
Deposit date:2018-08-13
Release date:2019-08-28
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structural basis for activation of a diguanylate cyclase required for bacterial predation in Bdellovibrio.
Nat Commun, 10, 2019
6HQ5
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Structure of EAL Enzyme Bd1971 - cAMP and cyclic-di-GMP bound form
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CALCIUM ION, ...
Authors:Lovering, A.L, Cadby, I.T.
Deposit date:2018-09-24
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.83 Å)
Cite:Nucleotide signaling pathway convergence in a cAMP-sensing bacterial c-di-GMP phosphodiesterase.
Embo J., 38, 2019
3TMB
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BU of 3tmb by Molmil
Bd1817, a HDG"Y"P protein from Bdellovibrio bacteriovorus
Descriptor: FE (III) ION, PHOSPHATE ION, Uncharacterized protein Bd1817
Authors:Lovering, A.L.
Deposit date:2011-08-31
Release date:2011-10-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
MBio, 2, 2011

 

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