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PDB: 289 件

6E5X
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Crystal structure of Ebola virus VP30 C-terminus/RBBP6 peptide complex
分子名称: CALCIUM ION, E3 ubiquitin-protein ligase RBBP6, Minor nucleoprotein VP30
著者Liu, D, Small, G.I, Leung, D.W, Amarasinghe, G.K.
登録日2018-07-23
公開日2018-12-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Protein Interaction Mapping Identifies RBBP6 as a Negative Regulator of Ebola Virus Replication.
Cell, 175, 2018
1BNO
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NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, MINIMIZED AVERAGE STRUCTURE
分子名称: DNA POLYMERASE BETA
著者Liu, D.-J, Prasad, R, Wilson, S.H, Derose, E.F, Mullen, G.P.
登録日1996-04-25
公開日1996-12-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface.
Biochemistry, 35, 1996
1BNP
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NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, 55 STRUCTURES
分子名称: DNA POLYMERASE BETA
著者Liu, D.-J, Prasad, R, Wilson, S.H, Derose, E.F, Mullen, G.P.
登録日1996-04-25
公開日1996-12-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface.
Biochemistry, 35, 1996
4FZ3
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Crystal structure of SIRT3 in complex with acetyl p53 peptide coupled with 4-amino-7-methylcoumarin
分子名称: NAD-dependent protein deacetylase sirtuin-3, mitochondrial, ZINC ION, ...
著者Liu, D, Wu, J, Zhang, D, Chen, K, Jiang, H, Liu, H.
登録日2012-07-06
公開日2013-03-20
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Discovery and Mechanism Study of SIRT1 Activators that Promote the Deacetylation of Fluorophore-Labeled Substrate
J.Med.Chem., 56, 2013
1ONB
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Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase
分子名称: helicase NS3
著者Liu, D, Wang, Y.S, Gesell, J.J, Wyss, D.F.
登録日2003-02-27
公開日2003-03-11
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and backbone dynamics of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase
J.Mol.Biol., 314, 2001
1PFI
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PF1 VIRUS STRUCTURE: HELICAL COAT PROTEIN AND DNA WITH PARAXIAL PHOSPHATES
分子名称: DNA (5'-D(P*C)-3'), MAJOR COAT PROTEIN OF PF1 VIRUS
著者Liu, D.J, Day, L.A.
登録日1994-04-06
公開日1995-01-26
最終更新日2024-02-14
実験手法FIBER DIFFRACTION (3 Å)
主引用文献Pf1 virus structure: helical coat protein and DNA with paraxial phosphates.
Science, 265, 1994
1JR6
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Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Helicase
分子名称: Helicase NS3
著者Liu, D, Wyss, D.F, Wang, Y.S, Gesell, J.J.
登録日2001-08-10
公開日2002-08-10
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure and backbone dynamics of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA helicase.
J.Mol.Biol., 314, 2001
1OVQ
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Solution structure of the hypothetical protein YqgF from Escherichia coli
分子名称: Hypothetical protein yqgF
著者Liu, D, Wang, Y.S, Wyss, D.F.
登録日2003-03-27
公開日2003-11-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the hypothetical protein YqgF from Escherichia coli reveals an RNAse H fold.
J.Biomol.NMR, 27, 2003
1A4O
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14-3-3 PROTEIN ZETA ISOFORM
分子名称: 14-3-3 PROTEIN ZETA
著者Liu, D, Bienkowska, J, Petosa, C, Collier, R.J, Fu, H, Liddington, R.C.
登録日1998-02-01
公開日1999-03-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of the zeta isoform of the 14-3-3 protein.
Nature, 376, 1995
3DHB
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1.4 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at The Catalytic Metal Center
分子名称: GLYCEROL, N-Acyl Homoserine Lactone Hydrolase, N-hexanoyl-L-homoserine, ...
著者Liu, D, Momb, J, Thomas, P.W, Moulin, A, Petsko, G.A, Fast, W, Ringe, D.
登録日2008-06-17
公開日2008-07-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.
Biochemistry, 47, 2008
3DHA
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An Ultral High Resolution Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at An Alternative Site
分子名称: GLYCEROL, N-Acyl Homoserine Lactone Hydrolase, N-hexanoyl-L-homoserine, ...
著者Liu, D, Momb, J, Thomas, P.W, Moulin, A, Petsko, G.A, Fast, W, Ringe, D.
登録日2008-06-17
公開日2008-07-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.
Biochemistry, 47, 2008
3DHC
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1.3 Angstrom Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homocysteine Bound to The catalytic Metal Center
分子名称: GLYCEROL, N-Acyl Homoserine Lactone Hydrolase, N-hexanoyl-L-homocysteine, ...
著者Liu, D, Momb, J, Thomas, P.W, Moulin, A, Petsko, G.A, Fast, W, Ringe, D.
登録日2008-06-17
公開日2008-07-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.
Biochemistry, 47, 2008
1RKN
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Solution structure of 1-110 fragment of Staphylococcal Nuclease with G88W mutation
分子名称: Thermonuclease
著者Liu, D.S, Feng, Y.G, Ye, K.Q, Shan, L, Wang, J.F.
登録日2003-11-22
公開日2004-12-07
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease
Biophys.J., 92, 2007
1YYB
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Solution structure of 1-26 fragment of human programmed cell death 5 protein
分子名称: Programmed cell death protein 5
著者Liu, D.S, Feng, Y.G, Yao, H.W, Wang, J.F.
登録日2005-02-24
公開日2005-09-13
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The N-terminal 26-residue fragment of human programmed cell death 5 protein can form a stable alpha-helix having unique electrostatic potential character.
Biochem.J., 392, 2005
1RQ8
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Solution structure of the hypothetical protein SAV1595 from Staphylococcus aureus, a putative RNA binding protein
分子名称: conserved hypothetical protein
著者Liu, D, Wyss, D.F.
登録日2003-12-04
公開日2004-07-06
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of the Hypothetical Protein SAV1595 from Staphylococcus Aureus, a Putative RNA Binding Protein.
J.Biomol.Nmr, 29, 2004
2A7M
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1.6 Angstrom Resolution Structure of the Quorum-Quenching N-Acyl Homoserine Lactone Hydrolase of Bacillus thuringiensis
分子名称: GLYCEROL, N-acyl homoserine lactone hydrolase, ZINC ION
著者Liu, D, Lepore, B.W, Petsko, G.A, Thomas, P.W, Stone, E.M, Fast, W, Ringe, D.
登録日2005-07-05
公開日2005-08-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Three-dimensional structure of the quorum-quenching N-acyl homoserine lactone hydrolase from Bacillus thuringiensis
Proc.Natl.Acad.Sci.Usa, 102, 2005
1TBA
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SOLUTION STRUCTURE OF A TBP-TAFII230 COMPLEX: PROTEIN MIMICRY OF THE MINOR GROOVE SURFACE OF THE TATA BOX UNWOUND BY TBP, NMR, 25 STRUCTURES
分子名称: TRANSCRIPTION INITIATION FACTOR IID 230K CHAIN, TRANSCRIPTION INITIATION FACTOR TFIID
著者Liu, D, Ishima, R, Tong, K.I, Bagby, S, Kokubo, T, Muhandiram, D.R, Kay, L.E, Nakatani, Y, Ikura, M.
登録日1998-08-16
公開日1999-08-16
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of a TBP-TAF(II)230 complex: protein mimicry of the minor groove surface of the TATA box unwound by TBP.
Cell(Cambridge,Mass.), 94, 1998
2F3W
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solution structure of 1-110 fragment of staphylococcal nuclease in 2M TMAO
分子名称: Thermonuclease
著者Liu, D, Xie, T, Feng, Y, Shan, L, Ye, K, Wang, J.
登録日2005-11-22
公開日2006-12-05
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease
Biophys.J., 92, 2007
2F3V
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Solution structure of 1-110 fragment of staphylococcal nuclease with V66W mutation
分子名称: Thermonuclease
著者Liu, D, Xie, T, Feng, Y, Shan, L, Ye, K, Wang, J.
登録日2005-11-22
公開日2006-12-05
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease
Biophys.J., 92, 2007
3EAZ
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Crystal structure of SH2 domain of Human Csk (carboxyl-terminal src kinase), C122S mutant.
分子名称: Tyrosine-protein kinase CSK
著者Liu, D, Seidel, R.D, Cowburn, D.
登録日2008-08-26
公開日2009-11-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase.
Biophys Rep, 2, 2016
3PAA
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Mechanism of inactivation of E. coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid (S-ADFA) pH 8.0
分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-aminofuran-2-carboxylic acid, Aspartate aminotransferase, ...
著者Liu, D, Pozharski, E, Fu, M, Silverman, R.B, Ringe, D.
登録日2010-10-19
公開日2010-12-01
最終更新日2019-07-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism of inactivation of Escherichia coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid .
Biochemistry, 49, 2010
3PA9
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Mechanism of inactivation of E. coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid (S-ADFA) pH 7.5
分子名称: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, 4-aminofuran-2-carboxylic acid, Aspartate aminotransferase, ...
著者Liu, D, Pozharski, E, Fu, M, Silverman, R.B, Ringe, D.
登録日2010-10-19
公開日2010-12-01
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Mechanism of inactivation of Escherichia coli aspartate aminotransferase by (S)-4-amino-4,5-dihydro-2-furancarboxylic acid .
Biochemistry, 49, 2010
3EAC
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Crystal structure of SH2 domain of Human Csk (carboxyl-terminal src kinase), Oxidized form.
分子名称: Tyrosine-protein kinase CSK
著者Liu, D, Seidel, R.D, Cowburn, D.
登録日2008-08-25
公開日2009-11-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Combining biophysical methods to analyze the disulfide bond in SH2 domain of C-terminal Src kinase.
Biophys Rep, 2, 2016
7JRR
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Crystal structures of artificially designed homomeric RNA nanoarchitectures
分子名称: MAGNESIUM ION, MANGANESE (II) ION, RNA (50-MER)
著者Liu, D, Shao, Y, Piccirilli, J.A, Weizmann, Y.
登録日2020-08-12
公開日2021-09-08
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution.
Sci Adv, 7, 2021
4J51
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Cyrstal structure of protein tyrosine phosphatase Lyp catalytic domain complex with small molecular inhibitor L75N04
分子名称: 3-[(3-chlorophenyl)ethynyl]-2-{4-[2-(cyclopropylamino)-2-oxoethoxy]phenyl}-6-hydroxy-1-benzofuran-5-carboxylic acid, Tyrosine-protein phosphatase non-receptor type 22
著者Liu, D, He, Y, Zhang, Z.-Y.
登録日2013-02-07
公開日2013-07-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A Potent and Selective Small-Molecule Inhibitor for the Lymphoid-Specific Tyrosine Phosphatase (LYP), a Target Associated with Autoimmune Diseases.
J.Med.Chem., 56, 2013

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