PDB Search results for query - Protein Data Bank Japan

PDB: 283 results

Cryo-EM structure of the TMEM106B fibril from Parkinson's disease dementia
Descriptor:	Transmembrane protein 106B
Authors:	Zhao, Q.Y, Xia, W.C, Fan, Y, Sun, Y.P, Tao, Y.Q, Liu, C.
Deposit date:	2022-03-11
Release date:	2022-06-15
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Generic amyloid fibrillation of TMEM106B in patient with Parkinson's disease dementia and normal elders. Cell Res., 32, 2022

8JP3

FCP trimer in diatom Thalassiosira pseudonana
Descriptor:	(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, CHLOROPHYLL A, ...
Authors:	Feng, Y, Li, Z, Zhou, C.C, Liu, C, Shen, J.R, Wang, W.
Deposit date:	2023-06-10
Release date:	2024-06-12
Last modified:	2024-07-31
Method:	ELECTRON MICROSCOPY (2.73 Å)
Cite:	Structural and spectroscopic insights into fucoxanthin chlorophyll a/c-binding proteins of diatoms in diverse oligomeric states. Plant Commun., 2024

7XO2

Minor polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-4) Parkinson's disease patient
Descriptor:	Alpha-synuclein
Authors:	Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:	2022-04-30
Release date:	2022-11-30
Last modified:	2024-07-03
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease. Structure, 31, 2023

7XO1

Major polymorph in alpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-1) Parkinson's disease patient
Descriptor:	Alpha-synuclein
Authors:	Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:	2022-04-30
Release date:	2022-11-30
Last modified:	2024-07-03
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease. Structure, 31, 2023

7XO0

Minor polymorph inalpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-1) Parkinson's disease patient
Descriptor:	Alpha-synuclein
Authors:	Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:	2022-04-30
Release date:	2022-11-30
Last modified:	2024-07-03
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease. Structure, 31, 2023

7XO3

Type 1C alpha-synuclein fibril seeded by cerebrospinal fluid from a mid-to-late stage (mid-PD-4) Parkinson's disease patient
Descriptor:	Alpha-synuclein
Authors:	Fan, Y, Sun, Y.P, Wang, J, Liu, C.
Deposit date:	2022-04-30
Release date:	2022-11-30
Last modified:	2024-07-03
Method:	ELECTRON MICROSCOPY (2.6 Å)
Cite:	Conformational change of alpha-synuclein fibrils in cerebrospinal fluid from different clinical phases of Parkinson's disease. Structure, 31, 2023

7DA4

Cryo-EM structure of amyloid fibril formed by human RIPK3
Descriptor:	Receptor-interacting serine/threonine-protein kinase 3
Authors:	Zhao, K, Ma, Y.Y, Sun, Y.P, Li, D, Liu, C.
Deposit date:	2020-10-14
Release date:	2021-04-28
Last modified:	2024-03-27
Method:	ELECTRON MICROSCOPY (4.24 Å)
Cite:	The structure of a minimum amyloid fibril core formed by necroptosis-mediating RHIM of human RIPK3. Proc.Natl.Acad.Sci.USA, 118, 2021

8HZC

Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-2)
Descriptor:	Alpha-synuclein
Authors:	Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:	2023-01-08
Release date:	2024-01-10
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-2) To Be Published

8HZB

Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-1)
Descriptor:	Alpha-synuclein
Authors:	Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:	2023-01-08
Release date:	2024-01-10
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	Formed alpha-synuclein fibrils after incubation with heparin for 1 hour (Hep-remod-1) To Be Published

8HZS

Formed alpha-synuclein fibrils after incubation with heparin for 3 days (Hep-remod-3)
Descriptor:	Alpha-synuclein
Authors:	Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
Deposit date:	2023-01-09
Release date:	2024-01-10
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	Formed alpha-synuclein fibrils after incubation with heparin for 3 days (Hep-remod-3) To Be Published

8J2C

Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, mutant N940V/K1106W/S1114R
Descriptor:	GLYCEROL, L(+)-TARTARIC ACID, Short-chain dehydrogenase/reductase SDR
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-04-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus To Be Published

8J29

Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus
Descriptor:	GLYCEROL, L(+)-TARTARIC ACID, Short-chain dehydrogenase/reductase SDR
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-04-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (1.88 Å)
Cite:	Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus To Be Published

8J2E

Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, mutant N940V/K1106W/S1114R in complex with NADP+ and malonate
Descriptor:	MALONIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase SDR
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-04-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (2.12 Å)
Cite:	Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus To Be Published

8J2A

Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, in complex with NADP+
Descriptor:	GLYCEROL, MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-04-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus To Be Published

8J2B

Structure of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus, in complex with NADP+ and malonate
Descriptor:	MALONIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Short-chain dehydrogenase/reductase SDR
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-04-14
Release date:	2024-04-17
Method:	X-RAY DIFFRACTION (2.13 Å)
Cite:	Structures of the C-terminal subenzyme of the malonyl-CoA reductase from Chloroflexus aurantiacus To Be Published

8J7N

The cryo-EM structure of Fe3+ induced alpha-syn fibril.
Descriptor:	Transmembrane protein 106B
Authors:	Zhao, Q.Y, Tao, Y.Q, Yan, F, Liu, C, Li, D.
Deposit date:	2023-04-27
Release date:	2024-05-01
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	The cryo-EM structure of PBB3 bound TMEM106B fibril. To Be Published

8J7P

The cryo-EM structure of PiB bound TMEM106B fibril.
Descriptor:	Transmembrane protein 106B
Authors:	Zhao, Q.Y, Tao, Y.Q, Yan, F, Liu, C, Li, D.
Deposit date:	2023-04-27
Release date:	2024-05-01
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	The cryo-EM structure of PiB bound TMEM106B fibril. To Be Published

8KF5

The cryo-EM structure of type1 amyloid beta 42 fibril in AD3.
Descriptor:	Amyloid-beta precursor protein
Authors:	Zhao, Q.Y, Tao, Y.Q, Liu, C, Li, D.
Deposit date:	2023-08-15
Release date:	2024-08-21
Method:	ELECTRON MICROSCOPY (3.4 Å)
Cite:	The cryo-EM structure of type1 amyloid beta 42 fibril in AD3. To Be Published

8KF4

The cryo-EM structure of type1 amyloid beta 42 fibril in AD2 patient.
Descriptor:	Amyloid-beta precursor protein
Authors:	Zhao, Q.Y, Tao, Y.Q, Liu, C, Li, D.
Deposit date:	2023-08-15
Release date:	2024-08-21
Method:	ELECTRON MICROSCOPY (3 Å)
Cite:	The cryo-EM structure of type1 amyloid beta 42 fibril in AD2 patient. To Be Published

8KF3

The cryo-EM structure of type3 amyloid beta 42 fibril.
Descriptor:	Amyloid-beta precursor protein
Authors:	Zhao, Q.Y, Tao, Y.Q, Liu, C, Li, D.
Deposit date:	2023-08-15
Release date:	2024-08-21
Method:	ELECTRON MICROSCOPY (3.5 Å)
Cite:	The cryo-EM structure of type1 amyloid beta 42 fibril. To Be Published

8KF6

The cryo-EM structure of AV-45 bound type3 amyloid beta 42 fibril.
Descriptor:	P3(40)
Authors:	Zhao, Q.Y, Tao, Y.Q, Liu, C, Li, D.
Deposit date:	2023-08-15
Release date:	2024-08-21
Method:	ELECTRON MICROSCOPY (3.7 Å)
Cite:	The cryo-EM structure of type1 amyloid beta 42 fibril. To Be Published

8KEW

The cryo-EM structure of type1 amyloid beta 42 fibril.
Descriptor:	P3(40)
Authors:	Zhao, Q.Y, Tao, Y.Q, Liu, C, Li, D.
Deposit date:	2023-08-13
Release date:	2024-08-14
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	The cryo-EM structure of type1 amyloid beta 42 fibril. To Be Published

8KF1

The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril.
Descriptor:	4-[2-[6-[2-[2-(2-fluoranylethoxy)ethoxy]ethoxy]pyridin-3-yl]ethyl]-~{N}-methyl-aniline, P3(40)
Authors:	Zhao, Q.Y, Tao, Y.Q, Liu, C, Li, D.
Deposit date:	2023-08-15
Release date:	2024-08-21
Method:	ELECTRON MICROSCOPY (3.3 Å)
Cite:	The cryo-EM structure of AV-45 bound type1 amyloid beta 42 fibril. To Be Published

8JV2

Structure of the SAR11 PotD in complex with proline
Descriptor:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, PROLINE, ...
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-06-27
Release date:	2024-07-03
Method:	X-RAY DIFFRACTION (1.3 Å)
Cite:	Structure of the SAR11 PotD in complex with proline To Be Published

8JV1

Structure of the SAR11 PotD in complex with GABA
Descriptor:	2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, GAMMA-AMINO-BUTANOIC ACID, ...
Authors:	Ma, Q, Liu, C.
Deposit date:	2023-06-27
Release date:	2024-07-03
Method:	X-RAY DIFFRACTION (1.309 Å)
Cite:	Structure of the SAR11 PotD in complex with GABA To Be Published

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Total results:	283
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Liu, C.S"