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PDB: 491 件
6BXM
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BU of 6bxm by Molmil
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM/cleaved SAM
分子名称: 5'-DEOXY-5'-METHYLTHIOADENOSINE, ALPHA-AMINOBUTYRIC ACID, Diphthamide biosynthesis enzyme Dph2, ...
著者Fenwick, M.K, Torelli, A.T, Zhang, Y, Dong, M, Kathiresan, V, Carantoa, J.D, Dzikovski, B, Lancaster, K.M, Freed, J.H, Hoffman, B.M, Lin, H, Ealick, S.E.
登録日2017-12-18
公開日2018-04-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.252 Å)
主引用文献Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.
Science, 359, 2018
6BXN
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BU of 6bxn by Molmil
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM
分子名称: Diphthamide biosynthesis enzyme Dph2, IRON/SULFUR CLUSTER, S-ADENOSYLMETHIONINE
著者Fenwick, M.K, Torelli, A.T, Zhang, Y, Dong, M, Kathiresan, V, Carantoa, J.D, Dzikovski, B, Lancaster, K.M, Freed, J.H, Hoffman, B.M, Lin, H, Ealick, S.E.
登録日2017-12-18
公開日2018-04-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.079 Å)
主引用文献Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.
Science, 359, 2018
6BXK
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BU of 6bxk by Molmil
Crystal structure of Pyrococcus horikoshii Dph2 with 4Fe-4S cluster and MTA
分子名称: 2-(3-amino-3-carboxypropyl)histidine synthase, 5'-DEOXY-5'-METHYLTHIOADENOSINE, IRON/SULFUR CLUSTER, ...
著者Torelli, A.T, Fenwick, M.K, Zhang, Y, Dong, M, Kathiresan, V, Carantoa, J.D, Dzikovski, B, Lancaster, K.M, Freed, J.H, Hoffman, B.M, Lin, H, Ealick, S.E.
登録日2017-12-18
公開日2018-04-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.347 Å)
主引用文献Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.
Science, 359, 2018
6DO3
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BU of 6do3 by Molmil
KLHDC2 ubiquitin ligase in complex with SelK C-end degron
分子名称: Kelch domain-containing protein 2, SelK C-end Degron
著者Rusnac, D.V, Lin, H.C, Yen, H.C.S, Zheng, N.
登録日2018-06-08
公開日2018-12-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.165 Å)
主引用文献Recognition of the Diglycine C-End Degron by CRL2KLHDC2Ubiquitin Ligase.
Mol. Cell, 72, 2018
6BXO
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BU of 6bxo by Molmil
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAH
分子名称: Diphthamide biosynthesis enzyme Dph2, IRON/SULFUR CLUSTER, S-ADENOSYL-L-HOMOCYSTEINE
著者Fenwick, M.K, Torelli, A.T, Zhang, Y, Dong, M, Kathiresan, V, Carantoa, J.D, Dzikovski, B, Lancaster, K.M, Freed, J.H, Hoffman, B.M, Lin, H, Ealick, S.E.
登録日2017-12-18
公開日2018-04-11
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.655 Å)
主引用文献Organometallic and radical intermediates reveal mechanism of diphthamide biosynthesis.
Science, 359, 2018
6DO5
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BU of 6do5 by Molmil
KLHDC2 ubiquitin ligase in complex with USP1 C-end degron
分子名称: Kelch domain-containing protein 2, USP1 C-END DEGRON
著者Rusnac, D.V, Lin, H.C, Yen, H.C.S, Zheng, N.
登録日2018-06-08
公開日2018-12-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Recognition of the Diglycine C-End Degron by CRL2KLHDC2Ubiquitin Ligase.
Mol. Cell, 72, 2018
6ZHS
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BU of 6zhs by Molmil
Uba1 bound to two E2 (Ubc13) molecules
分子名称: GLYCEROL, SULFATE ION, Ubiquitin-activating enzyme E1 1, ...
著者Misra, M, Schindelin, H.
登録日2020-06-23
公開日2022-01-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献ATP induced conformational changes facilitate E1-E2 disulfide bridging in the ubiquitin system.
To Be Published
6ZHT
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BU of 6zht by Molmil
Uba1-Ubc13 disulfide mediated complex
分子名称: CHLORIDE ION, GLYCEROL, Ubiquitin-activating enzyme E1 1, ...
著者Schaefer, A, Misra, M, Schindelin, H.
登録日2020-06-23
公開日2022-01-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献ATP induced conformational changes facilitate E1-E2 disulfide bridging in the ubiquitin system.
To Be Published
8XC3
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BU of 8xc3 by Molmil
Crystal structure of ZmHSL1A-MBQ complex
分子名称: 1,5-dimethyl-3-(2-methylphenyl)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 2-OXOGLUTARIC ACID, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, ...
著者Yang, G.-F, Lin, H.-Y, Dong, J.
登録日2023-12-07
公開日2024-10-02
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献An artificially evolved gene for herbicide-resistant rice breeding.
Proc.Natl.Acad.Sci.USA, 121, 2024
3ZJ7
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BU of 3zj7 by Molmil
Crystal structure of strictosidine glucosidase in complex with inhibitor-1
分子名称: (1R,2S,3S,4R,5R)-4-(cyclohexylamino)-5-(hydroxymethyl)cyclopentane-1,2,3-triol, STRICTOSIDINE-O-BETA-D-GLUCOSIDASE
著者Xia, L, Lin, H, Panjikar, S, Ruppert, M, Castiglia, A, Rajendran, C, Wang, M, Schuebel, H, Warzecha, H, Jaeger, V, Stoeckigt, J.
登録日2013-01-17
公開日2014-02-05
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Ligand Structures of Synthetic Deoxa-Pyranosylamines with Raucaffricine and Strictosidine Glucosidases Provide Structural Insights Into Their Binding and Inhibitory Behaviours.
J.Enzyme.Inhib.Med.Chem., 30, 2015
3U57
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BU of 3u57 by Molmil
Structures of Alkaloid Biosynthetic Glucosidases Decode Substrate Specificity
分子名称: (2beta,7beta,16S,17R,19E,21beta)-21-(beta-D-glucopyranosyloxy)-2,7-dihydro-7,17-cyclosarpagan-17-yl acetate, CHLORIDE ION, Raucaffricine-O-beta-D-glucosidase
著者Xia, L, Ruppert, M, Wang, M, Panjikar, S, Lin, H, Rajendran, C, Barleben, L, Stoeckigt, J.
登録日2011-10-11
公開日2011-11-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Structures of alkaloid biosynthetic glucosidases decode substrate specificity.
Acs Chem.Biol., 7, 2012
3U5Y
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BU of 3u5y by Molmil
Structures of Alkaloid Biosynthetic Glucosidases Decode Substrate Specificity
分子名称: CHLORIDE ION, Raucaffricine-O-beta-D-glucosidase, Secologanin
著者Xia, L, Ruppert, M, Wang, M, Panjikar, S, Lin, H, Rajendran, C, Barleben, L, Stoeckigt, J.
登録日2011-10-11
公開日2011-11-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of alkaloid biosynthetic glucosidases decode substrate specificity.
Acs Chem.Biol., 7, 2012
2Q5W
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BU of 2q5w by Molmil
The X-ray Crystal Structure of Molybdopterin Synthase from Staphylococcus aureus
分子名称: GLYCEROL, Molybdopterin converting factor, subunit 1, ...
著者Daniels, J.N, Schindelin, H.
登録日2007-06-03
公開日2008-02-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency.
Biochemistry, 47, 2008
7RK3
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BU of 7rk3 by Molmil
Crystal structure of human N-myristoyltransferase 1 fragment (residues 109-496) bound to diacylated human Arf6 octapeptide and Coenzyme A
分子名称: 4'-diphospho pantetheine, ADP-ribosylation factor 6, Glycylpeptide N-tetradecanoyltransferase 1, ...
著者Fenwick, M.K, Lin, H.
登録日2021-07-21
公開日2022-07-27
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of human N-myristoyltransferase 1 fragment (residues 109-496) bound to diacylated human Arf6 octapeptide and Coenzyme A
To Be Published
7ROM
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BU of 7rom by Molmil
Crystal structure of Saccharomyces cerevisiae NADH-cytochrome b5 reductase 1 (Cbr1) fragment (residues 28-284) bound to FAD
分子名称: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 1, ...
著者Fenwick, M.K, Zhang, Y, Lin, H.
登録日2021-07-31
公開日2022-08-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of Saccharomyces cerevisiae NADH-cytochrome b5 reductase 1 (Cbr1) fragment (residues 28-284) bound to FAD
To Be Published
3U5U
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BU of 3u5u by Molmil
Structures of Alkaloid Biosynthetic Glucosidases Decode Substrate Specificity
分子名称: CHLORIDE ION, Raucaffricine-O-beta-D-glucosidase
著者Xia, L, Ruppert, M, Wang, M, Panjikar, S, Lin, H, Rajendran, C, Barleben, L, Stoeckigt, J.
登録日2011-10-11
公開日2011-11-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of alkaloid biosynthetic glucosidases decode substrate specificity.
Acs Chem.Biol., 7, 2012
3DZF
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BU of 3dzf by Molmil
Crystal structure of human CD38 extracellular domain complexed with a covalent intermediate, ara-F-ribose-5'-phosphate
分子名称: 2-deoxy-2-fluoro-5-O-phosphono-alpha-D-arabinofuranose, ADP-ribosyl cyclase 1
著者Liu, Q, Kriksunov, I.A, Jiang, H, Graeff, R, Lin, H, Lee, H.C, Hao, Q.
登録日2008-07-29
公開日2008-11-04
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Covalent and Noncovalent Intermediates of an NAD Utilizing Enzyme, Human CD38.
Chem.Biol., 15, 2008
8WQM
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BU of 8wqm by Molmil
Complex structure of AtHPPD with Atovaquone
分子名称: 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
著者Yang, G.-F, Lin, H.-Y, Dong, J.
登録日2023-10-11
公開日2024-03-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.796 Å)
主引用文献Complex structure of AtHPPD with Atovaquone
To Be Published
8TMT
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BU of 8tmt by Molmil
Crystal structure of KPC-44 carbapenemase in complex with vaborbactam
分子名称: 1,2-ETHANEDIOL, GLYCEROL, LITHIUM ION, ...
著者Sun, Z, Palzkill, T, Hu, L, Neetu, N, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-30
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TJM
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BU of 8tjm by Molmil
Crystal structure of KPC-44 carbapenemase
分子名称: 1,2-ETHANEDIOL, SULFATE ION, beta-lactamase
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-23
公開日2023-12-06
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TMR
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BU of 8tmr by Molmil
Crystal structure of KPC-44 carbapenemase complexed with avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, PHOSPHATE ION, ...
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-30
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TN0
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BU of 8tn0 by Molmil
Crystal structure of KPC-44 carbapenemase w/o cryoprotectant
分子名称: SULFATE ION, beta-lactamase
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-31
公開日2023-12-06
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8WI6
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BU of 8wi6 by Molmil
Crystal structure of AtHPPD-ZSM824 complex
分子名称: 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION, N-(1-methyl-1,2,3,4-tetrazol-5-yl)-1-pentyl-pyrrolo[2,3-b]pyridine-4-carboxamide
著者Yang, G.-F, Lin, H.-Y, Dong, J.
登録日2023-09-24
公開日2024-09-25
実験手法X-RAY DIFFRACTION (1.916 Å)
主引用文献Crystal structure of AtHPPD-ZSM824 complex
To Be Published
8WHP
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BU of 8whp by Molmil
Crystal structure of AtHPPD-YH201042 complex
分子名称: 4-hydroxyphenylpyruvate dioxygenase, 6-(1,3-dimethyl-5-oxidanyl-pyrazol-4-yl)carbonyl-3-(2-ethoxyethyl)-5-methyl-2-(trifluoromethyl)quinazolin-4-one, COBALT (II) ION
著者Yang, G.-F, Lin, H.-Y, Dong, J.
登録日2023-09-23
公開日2024-09-25
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.919 Å)
主引用文献Crystal structure of AtHPPD-YH201042 complex
To Be Published
8WHO
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BU of 8who by Molmil
Crystal structure of AtHPPD-YH20541 complex
分子名称: 3-(ethylsulfanylmethyl)-~{N}-(5-methyl-1,3,4-oxadiazol-2-yl)-5-(trifluoromethyl)-[1,2,4]triazolo[4,3-a]pyridine-8-carboxamide, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
著者Yang, G.-F, Lin, H.-Y, Dong, J.
登録日2023-09-23
公開日2024-09-25
実験手法X-RAY DIFFRACTION (1.892 Å)
主引用文献Crystal structure of AtHPPD-YH20541 complex
To Be Published

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