Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 351 件

8HFD
DownloadVisualize
BU of 8hfd by Molmil
Crystal structure of allantoinase from E. coli BL21
分子名称: Allantoinase, DI(HYDROXYETHYL)ETHER, ZINC ION
著者Lin, E.S, Huang, H.Y, Yang, P.C, Liu, H.W, Huang, C.Y.
登録日2022-11-10
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal Structure of Allantoinase from Escherichia coli BL21: A Molecular Insight into a Role of the Active Site Loops in Catalysis.
Molecules, 28, 2023
2VVP
DownloadVisualize
BU of 2vvp by Molmil
Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate
分子名称: 5-O-phosphono-D-ribose, RIBOSE-5-PHOSPHATE ISOMERASE B, RIBULOSE-5-PHOSPHATE
著者Kowalinski, E, Roos, A.K, Mariano, S, Salmon, L, Mowbray, S.L.
登録日2008-06-10
公開日2008-07-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献D-Ribose-5-Phosphate Isomerase B from Escherichia Coli is Also a Functional D-Allose-6-Phosphate Isomerase, While the Mycobacterium Tuberculosis Enzyme is not.
J.Mol.Biol., 382, 2008
6TQ0
DownloadVisualize
BU of 6tq0 by Molmil
Crystal structure of the human Arc N-lobe bound to repeat peptide 5 from GKAP
分子名称: Activity-regulated cytoskeleton-associated protein, repeat peptide 5 from GKAP
著者Hallin, E.I, Bramham, C.R, Kursula, P.
登録日2019-12-15
公開日2021-01-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural properties and peptide ligand binding of the capsid homology domains of human Arc.
Biochem Biophys Rep, 26, 2021
8IM5
DownloadVisualize
BU of 8im5 by Molmil
Solution structure of the mouse HOIL1-L NZF domain in the free form
分子名称: RanBP-type and C3HC4-type zinc finger-containing protein 1, ZINC ION
著者Walinda, E, Morimoto, D.
登録日2023-03-06
公開日2023-08-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the HOIL-1L NZF domain reveals a conformational switch regulating linear ubiquitin affinity.
J.Biol.Chem., 299, 2023
7VUM
DownloadVisualize
BU of 7vum by Molmil
Crystal structure of SSB complexed with que
分子名称: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, Single-stranded DNA-binding protein
著者Lin, E.S, Huang, Y.H, Huang, C.Y.
登録日2021-11-03
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.319 Å)
主引用文献A Complexed Crystal Structure of a Single-Stranded DNA-Binding Protein with Quercetin and the Structural Basis of Flavonol Inhibition Specificity.
Int J Mol Sci, 23, 2022
7DEP
DownloadVisualize
BU of 7dep by Molmil
S. aureus SsbB with 5-FU
分子名称: 5-FLUOROURACIL, Single-stranded DNA-binding protein
著者Lin, E.S, Huang, Y.H, Huang, C.Y.
登録日2020-11-04
公開日2020-12-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.094 Å)
主引用文献Crystal structure of the single-stranded DNA-binding protein SsbB in complex with the anticancer drug 5-fluorouracil: Extension of the 5-fluorouracil interactome to include the oligonucleotide/oligosaccharide-binding fold protein
Biochem.Biophys.Res.Commun., 534, 2020
7F2N
DownloadVisualize
BU of 7f2n by Molmil
Crystal structure of SSB from Klebsiella pneumonia.
分子名称: Single-stranded DNA-binding protein
著者Lin, E.S, Huang, Y.H, Huang, C.Y.
登録日2021-06-11
公開日2021-11-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Characterization of the Chimeric PriB-SSBc Protein.
Int J Mol Sci, 22, 2021
7D8J
DownloadVisualize
BU of 7d8j by Molmil
S. aureus SsbB with 5-FU
分子名称: 5-FLUOROURACIL, Single-stranded DNA-binding protein
著者Lin, E.S, Huang, Y.H, Huang, C.Y.
登録日2020-10-08
公開日2020-12-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Crystal structure of the single-stranded DNA-binding protein SsbB in complex with the anticancer drug 5-fluorouracil: Extension of the 5-fluorouracil interactome to include the oligonucleotide/oligosaccharide-binding fold protein
Biochem.Biophys.Res.Commun., 534, 2020
6YTU
DownloadVisualize
BU of 6ytu by Molmil
Atomic-resolution structure of the coiled-coil dimerisation domain of human Arc
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Activity-regulated cytoskeleton-associated protein, CHLORIDE ION
著者Hallin, E.I, Touma, C, Bramham, C.R, Kursula, P.
登録日2020-04-24
公開日2021-03-03
最終更新日2021-05-12
実験手法X-RAY DIFFRACTION (0.95 Å)
主引用文献Arc self-association and formation of virus-like capsids are mediated by an N-terminal helical coil motif.
Febs J., 288, 2021
5JEA
DownloadVisualize
BU of 5jea by Molmil
Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Exosome complex component CSL4, Exosome complex component MTR3, ...
著者Kowalinski, E, Ebert, J, Stegmann, E, Conti, E.
登録日2016-04-18
公開日2016-07-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex.
Mol.Cell, 63, 2016
8G9N
DownloadVisualize
BU of 8g9n by Molmil
Partial DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA template, ...
著者Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
登録日2023-02-21
公開日2023-04-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
8G9F
DownloadVisualize
BU of 8g9f by Molmil
Complete auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase
分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase, ...
著者Mullins, E.A, Chazin, W.J, Eichman, B.F.
登録日2023-02-21
公開日2023-04-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
8G9L
DownloadVisualize
BU of 8g9l by Molmil
DNA initiation subcomplex of Xenopus laevis DNA polymerase alpha-primase
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA primase large subunit, ...
著者Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
登録日2023-02-21
公開日2023-04-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
8G9O
DownloadVisualize
BU of 8g9o by Molmil
Complete DNA elongation subcomplex of Xenopus laevis DNA polymerase alpha-primase
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA primase large subunit, ...
著者Mullins, E.A, Durie, C.L, Ohi, M.D, Chazin, W.J, Eichman, B.F.
登録日2023-02-21
公開日2023-04-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
8G99
DownloadVisualize
BU of 8g99 by Molmil
Partial auto-inhibitory complex of Xenopus laevis DNA polymerase alpha-primase
分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase large subunit, ...
著者Mullins, E.A, Chazin, W.J, Eichman, B.F.
登録日2023-02-21
公開日2023-04-12
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献A mechanistic model of primer synthesis from catalytic structures of DNA polymerase alpha-primase.
Nat.Struct.Mol.Biol., 31, 2024
5KUB
DownloadVisualize
BU of 5kub by Molmil
Bacillus cereus DNA glycosylase AlkD bound to 7-methylguanine nucleobase and DNA containing an oxocarbenium-intermediate analog
分子名称: 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one, DNA (5'-D(*CP*CP*CP*GP*AP*(NRI)P*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*CP*TP*CP*GP*GP*G)-3'), ...
著者Mullins, E.A, Eichman, B.F.
登録日2016-07-13
公開日2016-09-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献A Catalytic Role for C-H/ pi Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD.
J.Am.Chem.Soc., 138, 2016
4ZKE
DownloadVisualize
BU of 4zke by Molmil
Crystal structure of the S. cerevisiae Ski7 GTPase-like domain, bound to GTP.
分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SODIUM ION, ...
著者Kowalinski, E, Conti, E.
登録日2015-04-30
公開日2015-06-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases.
Structure, 23, 2015
4ZKD
DownloadVisualize
BU of 4zkd by Molmil
Crystal structure of the S. cerevisiae Ski7 GTPase-like domain, bound to GDP and inorganic phosphate.
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
著者Kowalinski, E, Conti, E.
登録日2015-04-30
公開日2015-06-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.181 Å)
主引用文献Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases.
Structure, 23, 2015
6SID
DownloadVisualize
BU of 6sid by Molmil
Crystal structure of the C-lobe of drosophila Arc 1 at atomic resolution
分子名称: Activity-regulated cytoskeleton associated protein 1
著者Hallin, E.I, Kursula, P.
登録日2019-08-09
公開日2019-08-28
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc.
Plos One, 16, 2021
6SIE
DownloadVisualize
BU of 6sie by Molmil
Crystal structure of the C-lobe of drosophila Arc 2
分子名称: Activity-regulated cytoskeleton associated protein 2, SULFATE ION
著者Hallin, E.I, Kursula, P.
登録日2019-08-09
公開日2019-08-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc.
Plos One, 16, 2021
6SIB
DownloadVisualize
BU of 6sib by Molmil
Crystal structure of the domain-swapped N-lobe dimer of drosophila Arc 2
分子名称: Activity-regulated cytoskeleton associated protein 2
著者Hallin, E.I, Kursula, P.
登録日2019-08-09
公開日2019-08-28
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal and solution structures reveal oligomerization of individual capsid homology domains of Drosophila Arc.
Plos One, 16, 2021
4X8Q
DownloadVisualize
BU of 4x8q by Molmil
X-ray crystal structure of AlkD2 from Streptococcus mutans
分子名称: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ...
著者Mullins, E.A, Shi, R, Eichman, B.F.
登録日2014-12-10
公開日2015-05-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.729 Å)
主引用文献A New Family of HEAT-Like Repeat Proteins Lacking a Critical Substrate Recognition Motif Present in Related DNA Glycosylases.
Plos One, 10, 2015
7LXH
DownloadVisualize
BU of 7lxh by Molmil
Bacillus cereus DNA glycosylase AlkD bound to a CC1065-adenine nucleobase adduct and DNA containing an abasic site
分子名称: 7-{7-[(1R)-1-{[(4P)-6-amino-3H-purin-3-yl]methyl}-5-hydroxy-8-methyl-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl]-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carbonyl}-4-hydroxy-5-methoxy-1,6-dihydropyrrolo[3,2-e]indole-3(2H)-carboxamide, CALCIUM ION, DNA (5'-D(*AP*GP*CP*AP*AP*(ORP)P*GP*GP*C)-3'), ...
著者Mullins, E.A, Eichman, B.F.
登録日2021-03-03
公開日2021-11-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.667 Å)
主引用文献Structural evolution of a DNA repair self-resistance mechanism targeting genotoxic secondary metabolites.
Nat Commun, 12, 2021
5E5H
DownloadVisualize
BU of 5e5h by Molmil
Succinyl-CoA:acetate CoA-transferase (AarCH6) bound to acetate and degradation products from the acetyl-CoA analogue dethiaacetyl-CoA
分子名称: ACETATE ION, ACETYL GROUP, CHLORIDE ION, ...
著者Mullins, E.A, Kappock, T.J.
登録日2015-10-08
公開日2016-05-18
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.052 Å)
主引用文献Functional Dissection of the Bipartite Active Site of the Class I Coenzyme A (CoA)-Transferase Succinyl-CoA:Acetate CoA-Transferase.
Front Chem, 4, 2016
5CLB
DownloadVisualize
BU of 5clb by Molmil
Alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-methyladenine analog (9-mer A)
分子名称: AlkD, DNA (5'-D(*AP*AP*GP*CP*AP*(DZM)P*AP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*TP*TP*TP*GP*CP*T)-3')
著者Mullins, E.A, Eichman, B.F.
登録日2015-07-16
公開日2015-10-28
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.766 Å)
主引用文献The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
Nature, 527, 2015

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon