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PDB: 97 results

6R47
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BU of 6r47 by Molmil
The structure of pistol ribozyme bound to magnesium
Descriptor: MAGNESIUM ION, RNA, RNA (50-MER)
Authors:Lilley, D.M.J, Wilson, T.M, Liu, Y.
Deposit date:2019-03-22
Release date:2019-07-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
J.Am.Chem.Soc., 141, 2019
5T5A
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BU of 5t5a by Molmil
Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom
Descriptor: DNA/RNA (71-MER), MAGNESIUM ION
Authors:Lilley, D.M.J, Liu, Y, Wilson, T.J.
Deposit date:2016-08-30
Release date:2017-03-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of a nucleolytic ribozyme that employs a catalytic metal ion.
Nat. Chem. Biol., 13, 2017
6GRC
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BU of 6grc by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Sodium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.452 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRD
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BU of 6grd by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Cesium
Descriptor: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRB
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BU of 6grb by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Potassium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
4CS1
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BU of 4cs1 by Molmil
Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3', MAGNESIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2014-03-03
Release date:2014-11-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function.
Nat.Commun., 5, 2014
7V9E
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BU of 7v9e by Molmil
Crystal structure of a methyl transferase ribozyme
Descriptor: BARIUM ION, GUANINE, RNA (68-MER), ...
Authors:Deng, J, Lilley, D.M.J, Huang, L.
Deposit date:2021-08-25
Release date:2022-03-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanism of a methyltransferase ribozyme.
Nat.Chem.Biol., 18, 2022
6QN3
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BU of 6qn3 by Molmil
Structure of the Glutamine II Riboswitch
Descriptor: BROMIDE ION, GLUTAMINE, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-02-08
Release date:2019-06-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and ligand binding of the glutamine-II riboswitch.
Nucleic Acids Res., 47, 2019
6Q8U
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BU of 6q8u by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein
Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3'), SODIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6Q8V
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BU of 6q8v by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A.
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
7EAG
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BU of 7eag by Molmil
Crystal structure of the RAGATH-18 k-turn
Descriptor: RNA (5'-R(*GP*UP*CP*UP*AP*UP*GP*AP*AP*GP*GP*CP*UP*GP*GP*AP*GP*AP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2021-03-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
7EAF
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BU of 7eaf by Molmil
Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
Descriptor: BARIUM ION, RNA (94-MER), S-ADENOSYLMETHIONINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2021-03-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
4OJI
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BU of 4oji by Molmil
Crystal Structure of Twister Ribozyme
Descriptor: MAGNESIUM ION, RNA (52-MER)
Authors:Liu, Y, Wilson, T.J, McPhee, S.A, Lilley, D.M.J.
Deposit date:2014-01-21
Release date:2014-07-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure and mechanistic investigation of the twister ribozyme.
Nat.Chem.Biol., 10, 2014
8HBA
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BU of 8hba by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NAD
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, RNA (55-MER)
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB1
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BU of 8hb1 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, RNA (30-MER), ...
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB8
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BU of 8hb8 by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NMN
Descriptor: BARIUM ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (55-MER)
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB3
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BU of 8hb3 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NR
Descriptor: Nicotinamide riboside, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8I3Z
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BU of 8i3z by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3'), ...
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2023-01-18
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8ITS
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BU of 8its by Molmil
Crystal structure of DUF-3268 k-junction
Descriptor: MAGNESIUM ION, RNA (46-MER)
Authors:Li, M, Lilley, D.M.J, Huang, L.
Deposit date:2023-03-22
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of DUF-3268 k-junction
To Be Published
6HC5
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BU of 6hc5 by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine
Descriptor: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-14
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
6HBX
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BU of 6hbx by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with ethylguanidine
Descriptor: N-ETHYLGUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-13
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
6FZ0
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BU of 6fz0 by Molmil
Crystal structure of the metY SAM V riboswitch
Descriptor: MAGNESIUM ION, S-ADENOSYLMETHIONINE, SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-03-13
Release date:2018-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structure and ligand binding of the SAM-V riboswitch.
Nucleic Acids Res., 46, 2018
6HCT
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BU of 6hct by Molmil
Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn
Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*G)-3'), RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*GP*CP*AP*UP*GP*AP*AP*GP*C)-3'), ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-16
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.091 Å)
Cite:The role of RNA structure in translational regulation by L7Ae protein in archaea.
RNA, 25, 2019
6HBT
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BU of 6hbt by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with arcaine
Descriptor: 1-(4-carbamimidamidobutyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-13
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
1FZR
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BU of 1fzr by Molmil
CRYSTAL STRUCTURE OF BACTERIOPHAGE T7 ENDONUCLEASE I
Descriptor: ENDONUCLEASE I
Authors:Hadden, J.M, Convery, M.A, Declais, A.C, Lilley, D.M.J, Phillips, S.E.V.
Deposit date:2000-10-04
Release date:2001-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I.
Nat.Struct.Biol., 8, 2001

 

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數據於2024-11-06公開中

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