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PDB: 100 results
6GRC
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BU of 6grc by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Sodium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.452 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRD
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BU of 6grd by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Cesium
Descriptor: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRB
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BU of 6grb by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Potassium
Descriptor: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
Authors:Lilley, D.M.J, Liu, Y, Freeman, D.J.
Deposit date:2018-06-11
Release date:2018-09-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
5T5A
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BU of 5t5a by Molmil
Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom
Descriptor: DNA/RNA (71-MER), MAGNESIUM ION
Authors:Lilley, D.M.J, Liu, Y, Wilson, T.J.
Deposit date:2016-08-30
Release date:2017-03-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structure of a nucleolytic ribozyme that employs a catalytic metal ion.
Nat. Chem. Biol., 13, 2017
6R47
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BU of 6r47 by Molmil
The structure of pistol ribozyme bound to magnesium
Descriptor: MAGNESIUM ION, RNA, RNA (50-MER)
Authors:Lilley, D.M.J, Wilson, T.M, Liu, Y.
Deposit date:2019-03-22
Release date:2019-07-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
J.Am.Chem.Soc., 141, 2019
4CS1
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BU of 4cs1 by Molmil
Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.
Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3', MAGNESIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2014-03-03
Release date:2014-11-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function.
Nat.Commun., 5, 2014
4OJI
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BU of 4oji by Molmil
Crystal Structure of Twister Ribozyme
Descriptor: MAGNESIUM ION, RNA (52-MER)
Authors:Liu, Y, Wilson, T.J, McPhee, S.A, Lilley, D.M.J.
Deposit date:2014-01-21
Release date:2014-07-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure and mechanistic investigation of the twister ribozyme.
Nat.Chem.Biol., 10, 2014
8ITS
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BU of 8its by Molmil
Crystal structure of DUF-3268 k-junction
Descriptor: MAGNESIUM ION, RNA (46-MER)
Authors:Li, M, Lilley, D.M.J, Huang, L.
Deposit date:2023-03-22
Release date:2024-03-27
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure and ion-dependent folding of k-junctions.
Rna, 29, 2023
7V9E
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BU of 7v9e by Molmil
Crystal structure of a methyl transferase ribozyme
Descriptor: BARIUM ION, GUANINE, RNA (68-MER), ...
Authors:Deng, J, Lilley, D.M.J, Huang, L.
Deposit date:2021-08-25
Release date:2022-03-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and mechanism of a methyltransferase ribozyme.
Nat.Chem.Biol., 18, 2022
5CNQ
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BU of 5cnq by Molmil
Crystal structure of the Holliday junction-resolving enzyme GEN1 (WT) in complex with product DNA, Mg2+ and Mn2+ ions
Descriptor: DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MANGANESE (II) ION, Nuclease-like protein, ...
Authors:Liu, Y.J, Freeman, A.D.J, Declais, A.C, Wilson, T.J, Gartner, A, Lilley, D.M.J.
Deposit date:2015-07-17
Release date:2015-12-30
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.602 Å)
Cite:Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA.
Cell Rep, 13, 2015
5CO8
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BU of 5co8 by Molmil
Crystal structure of the Holliday junction-resolving enzyme GEN1 (WT) in complex with product DNA and Mg2+ ion
Descriptor: DNA (31-MER), DNA (5'-D(*AP*GP*AP*CP*TP*GP*CP*AP*GP*TP*TP*GP*AP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*A)-3'), ...
Authors:Liu, Y.J, Freeman, A.D.J, Declais, A.C, Wilson, T.J, Gartner, A, Lilley, D.M.J.
Deposit date:2015-07-20
Release date:2016-01-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of a Eukaryotic GEN1 Resolving Enzyme Bound to DNA.
Cell Rep, 13, 2015
352D
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BU of 352d by Molmil
THE CRYSTAL STRUCTURE OF A PARALLEL-STRANDED PARALLEL-STRANDED GUANINE TETRAPLEX AT 0.95 ANGSTROM RESOLUTION
Descriptor: CALCIUM ION, DNA (5'-D(*TP*GP*GP*GP*GP*T)-3'), SODIUM ION
Authors:Phillips, K, Dauter, Z, Murchie, A.I.H, Lilley, D.M.J, Luisi, B.
Deposit date:1997-09-04
Release date:1997-11-10
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:The crystal structure of a parallel-stranded guanine tetraplex at 0.95 A resolution.
J.Mol.Biol., 273, 1997
6TB7
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BU of 6tb7 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP)
Descriptor: ADENOSINE MONOPHOSPHATE, BROMIDE ION, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-01
Release date:2020-09-30
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch.
Rna, 26, 2020
6TF2
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BU of 6tf2 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 5-triphosphate (ATP)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BROMIDE ION, Chains: A, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-12
Release date:2020-09-23
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
6TFH
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BU of 6tfh by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+)
Descriptor: Chains: A, MANGANESE (II) ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
8HBA
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BU of 8hba by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NAD
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, RNA (55-MER)
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB1
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BU of 8hb1 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, RNA (30-MER), ...
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB8
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BU of 8hb8 by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NMN
Descriptor: BARIUM ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (55-MER)
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB3
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BU of 8hb3 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NR
Descriptor: Nicotinamide riboside, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2022-10-27
Release date:2023-03-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.87 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
6Q8U
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BU of 6q8u by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein
Descriptor: 50S ribosomal protein L7Ae, RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3'), SODIUM ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6Q8V
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BU of 6q8v by Molmil
Structure of the standard kink turn HmKt-7 variant A2bm6A.
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-12-16
Release date:2019-07-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
8I3Z
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BU of 8i3z by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
Descriptor: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3'), ...
Authors:Peng, X, Lilley, D.M.J, Huang, L.
Deposit date:2023-01-18
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
7EAG
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BU of 7eag by Molmil
Crystal structure of the RAGATH-18 k-turn
Descriptor: RNA (5'-R(*GP*UP*CP*UP*AP*UP*GP*AP*AP*GP*GP*CP*UP*GP*GP*AP*GP*AP*C)-3')
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2021-03-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
7EAF
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BU of 7eaf by Molmil
Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
Descriptor: BARIUM ION, RNA (94-MER), S-ADENOSYLMETHIONINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2021-03-07
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
2YDH
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BU of 2ydh by Molmil
Crystal structure of the SAM-I riboswitch A94G U34 G18U G19U variant in complex with SAM
Descriptor: BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH
Authors:Schroeder, K.T, Daldrop, P, Lilley, D.M.J.
Deposit date:2011-03-21
Release date:2011-09-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:RNA Tertiary Interactions in a Riboswitch Stabilize the Structure of a Kink Turn.
Structure, 19, 2011

 

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