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PDB: 918 results
2L93
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BU of 2l93 by Molmil
Solution structure of the C-terminal domain of Salmonella H-NS
Descriptor: DNA-binding protein H-NS
Authors:Li, Y.
Deposit date:2011-01-29
Release date:2011-06-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins
Proc.Natl.Acad.Sci.USA, 108, 2011
2L92
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BU of 2l92 by Molmil
Solution structure of the C-terminal domain of H-NS like protein Bv3F
Descriptor: Histone family protein nucleoid-structuring protein H-NS
Authors:Li, Y, Xia, B.
Deposit date:2011-01-29
Release date:2011-06-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins
Proc.Natl.Acad.Sci.USA, 108, 2011
2MM4
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BU of 2mm4 by Molmil
Structure of a Conserved Golgi Complex-targeting Signal in Coronavirus Envelope Proteins
Descriptor: Envelope small membrane protein
Authors:Li, Y, Surya, W, Claudine, S, Torres, J.
Deposit date:2014-03-09
Release date:2014-04-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a conserved Golgi complex-targeting signal in coronavirus envelope proteins.
J.Biol.Chem., 289, 2014
3N54
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BU of 3n54 by Molmil
Crystal Structure of the GerBC protein
Descriptor: CHLORIDE ION, SULFATE ION, Spore germination protein B3
Authors:Li, Y, Setlow, B, Setlow, P, Hao, B.
Deposit date:2010-05-24
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the GerBC Component of a Bacillus subtilis Spore Germinant Receptor.
J.Mol.Biol., 402, 2010
8GPT
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BU of 8gpt by Molmil
YFV_E_YD6scFv_postfusion
Descriptor: Envelope protein, YD6_VH, YD6_VL
Authors:Li, Y, Wu, L, Qi, J, Yan, J, Gao, G.F.
Deposit date:2022-08-27
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.07 Å)
Cite:A neutralizing-protective supersite of human monoclonal antibodies for yellow fever virus.
Innovation (N Y), 3, 2022
8GPU
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BU of 8gpu by Molmil
YFV_E_YD6Fab_prefusion
Descriptor: Envelope protein, YD6Fab_H, YD6Fab_L
Authors:Li, Y, Wu, L, Qi, J, Yan, J, Gao, G.F.
Deposit date:2022-08-27
Release date:2022-11-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:A neutralizing-protective supersite of human monoclonal antibodies for yellow fever virus.
Innovation (N Y), 3, 2022
3IWP
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BU of 3iwp by Molmil
Crystal structure of human copper homeostasis protein CutC
Descriptor: Copper homeostasis protein cutC homolog
Authors:Li, Y, Du, J, Zhang, P, Ding, J.
Deposit date:2009-09-03
Release date:2009-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of human copper homeostasis protein CutC reveals a potential copper-binding site
To be Published
3IBP
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BU of 3ibp by Molmil
The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB
Descriptor: AMMONIUM ION, Chromosome partition protein mukB
Authors:Li, Y, Schoeffler, A.J, Berger, J.M, Oakley, M.G.
Deposit date:2009-07-16
Release date:2010-01-26
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.099 Å)
Cite:The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.
J.Mol.Biol., 395, 2010
3PV6
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BU of 3pv6 by Molmil
Crystal structure of NKp30 bound to its ligand B7-H6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167, ...
Authors:Li, Y.
Deposit date:2010-12-06
Release date:2011-03-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the activating natural killer cell receptor NKp30 bound to its ligand B7-H6 reveals basis for tumor cell recognition in humans
to be published
3PV7
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BU of 3pv7 by Molmil
Crystal structure of NKp30 ligand B7-H6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ig-like domain-containing protein DKFZp686O24166/DKFZp686I21167
Authors:Li, Y.
Deposit date:2010-12-06
Release date:2011-03-16
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the activating natural killer cell receptor NKp30 bound to its ligand B7-H6 reveals basis for tumor cell recognition in humans
to be published
3L2O
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BU of 3l2o by Molmil
Structure-Based Mechanism of Dimerization-Dependent Ubiquitination by the SCFFbx4 Ubiquitin Ligase
Descriptor: F-box only protein 4, S-phase kinase-associated protein 1
Authors:Li, Y, Hao, B.
Deposit date:2009-12-15
Release date:2010-02-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis of dimerization-dependent ubiquitination by the SCF(Fbx4) ubiquitin ligase.
J.Biol.Chem., 285, 2010
3KTQ
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BU of 3ktq by Molmil
CRYSTAL STRUCTURE OF AN ACTIVE TERNARY COMPLEX OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS
Descriptor: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*DOC)-3'), ...
Authors:Li, Y, Waksman, G.
Deposit date:1998-07-28
Release date:1999-01-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.
EMBO J., 17, 1998
3Q98
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BU of 3q98 by Molmil
Structure of ygeW encoded protein from E. coli
Descriptor: transcarbamylase
Authors:Li, Y, Jing, Z, Yu, X, Allewell, N.M, Tuchman, M, Shi, D.
Deposit date:2011-01-07
Release date:2011-05-04
Last modified:2018-06-06
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.
Proteins, 79, 2011
3QUX
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BU of 3qux by Molmil
Structure of the mouse CD1d-alpha-C-GalCer-iNKT TCR complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Li, Y, Girardi, E, Yu, E.D, Zajonc, D.M.
Deposit date:2011-02-24
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Galactose-modified iNKT cell agonists stabilized by an induced fit of CD1d prevent tumour metastasis.
Embo J., 30, 2011
3L6F
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BU of 3l6f by Molmil
Structure of MHC class II molecule HLA-DR1 complexed with phosphopeptide MART-1
Descriptor: HLA class II histocompatibility antigen, DR alpha chain, DRB1-1 beta chain, ...
Authors:Li, Y, Mariuzza, R.A.
Deposit date:2009-12-23
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Basis for the Presentation of Tumor-Associated MHC Class II-Restricted Phosphopeptides to CD4(+) T Cells.
J.Mol.Biol., 399, 2010
3QUZ
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BU of 3quz by Molmil
Structure of the mouse CD1d-NU-alpha-GalCer-iNKT TCR complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d1, ...
Authors:Li, Y, Girardi, E, Yu, E.D, Zajonc, D.M.
Deposit date:2011-02-24
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Galactose-modified iNKT cell agonists stabilized by an induced fit of CD1d prevent tumour metastasis.
Embo J., 30, 2011
3QUY
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BU of 3quy by Molmil
Structure of the mouse CD1d-BnNH-GSL-1'-iNKT TCR complex
Descriptor: (2S,3R,4S,5R,6S)-6-[(2S,3S,4R)-2-(hexacosanoylamino)-3,4-dihydroxy-octadecoxy]-3,4,5-trihydroxy-N-(phenylmethyl)oxane-2-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, Y, Girardi, E, Yu, E.D, Zajonc, D.M.
Deposit date:2011-02-24
Release date:2011-06-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Galactose-modified iNKT cell agonists stabilized by an induced fit of CD1d prevent tumour metastasis.
Embo J., 30, 2011
3M4J
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BU of 3m4j by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with PALAO
Descriptor: N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y, Yu, X, Allewell, N.M, Tuchman, M, Shi, D.
Deposit date:2010-03-11
Release date:2010-07-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reversible Post-Translational Carboxylation Modulates the Enzymatic Activity of N-Acetyl-l-ornithine Transcarbamylase.
Biochemistry, 49, 2010
3M4N
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BU of 3m4n by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase K302A mutant complexed with PALAO
Descriptor: N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y, Yu, X, Allewell, N.M, Tuchman, M, Shi, D.
Deposit date:2010-03-11
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
Biochemistry, 49, 2010
3M5D
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BU of 3m5d by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase K302R mutant complexed with PALAO
Descriptor: N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y, Yu, X, Allewell, N.M, Tuchman, M, Shi, D.
Deposit date:2010-03-12
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
Biochemistry, 49, 2010
3M5C
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BU of 3m5c by Molmil
Crystal structure of N-acetyl-L-ornithine transcarbamylase K302E mutant complexed with PALAO
Descriptor: N-acetylornithine carbamoyltransferase, N~2~-acetyl-N~5~-(phosphonoacetyl)-L-ornithine, SULFATE ION
Authors:Li, Y, Yu, X, Allewell, N.M, Tuchman, M, Shi, D.
Deposit date:2010-03-12
Release date:2010-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.
Biochemistry, 49, 2010
2A3I
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BU of 2a3i by Molmil
Structural and Biochemical Mechanisms for the Specificity of Hormone Binding and Coactivator Assembly by Mineralocorticoid Receptor
Descriptor: CORTICOSTERONE, Mineralocorticoid receptor, Nuclear receptor coactivator 1, ...
Authors:Li, Y, Suino, K, Daugherty, J, Xu, H.E.
Deposit date:2005-06-24
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural and biochemical mechanisms for the specificity of hormone binding and coactivator assembly by mineralocorticoid receptor
Mol.Cell, 19, 2005
4YZE
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BU of 4yze by Molmil
Crystal structure of E.coli NemR reduced form
Descriptor: HTH-type transcriptional repressor NemR
Authors:Li, Y, Gray, M.J, Jakob, U, Xu, Z.
Deposit date:2015-03-24
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Does the Transcription Factor NemR Use a Regulatory Sulfenamide Bond to Sense Bleach?
Antioxid.Redox Signal., 23, 2015
6L5Z
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BU of 6l5z by Molmil
Crystal strucutre of AF9 YEATS domain in complex with a cyclopeptide inhibitor
Descriptor: Protein AF-9, SC0-ALO-ALA-SC3-SC4-NH2
Authors:Li, Y, Chen, G, Li, H.
Deposit date:2019-10-25
Release date:2020-10-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Selective Targeting of AF9 YEATS Domain by Cyclopeptide Inhibitors with Preorganized Conformation.
J.Am.Chem.Soc., 142, 2020
4ZVV
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BU of 4zvv by Molmil
Lactate dehydrogenase A in complex with a trisubstituted piperidine-2,4-dione inhibitor GNE-140
Descriptor: (2~{R})-5-(2-chlorophenyl)sulfanyl-2-(4-morpholin-4-ylphenyl)-4-oxidanyl-2-thiophen-3-yl-1,3-dihydropyridin-6-one, L-lactate dehydrogenase A chain, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Li, Y, Chen, Z, Eigenbrot, C.
Deposit date:2015-05-18
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Metabolic plasticity underpins innate and acquired resistance to LDHA inhibition.
Nat.Chem.Biol., 12, 2016

220472

數據於2024-05-29公開中

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